Camilo Laiton commited on
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b64ac78
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1 Parent(s): 19eaf37

updating readme

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Files changed (2) hide show
  1. README.md +2 -2
  2. model.json +1 -1
README.md CHANGED
@@ -49,14 +49,14 @@ The model was trained with a resolution of **14.4 microns in XY** and **16 micro
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  ```
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- python large_scale_mask_prediction.py --input_path path/to/your/image.zarr
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  ```
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  ## Input Parameters
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  | Parameter | Description |
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  |-----------|-------------|
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  | `image_path` | Path to the OME-Zarr dataset (local or S3). Example: `s3://bucket/SmartSPIM_Dataset/Ex_639_Em_667.zarr` |
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- | `model_path` | Path to the trained segmentation model. |
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  | `output_folder` | Directory where results will be saved. |
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  | `target_size_mb` | Memory allocation target for large-scale predictions. |
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  | `n_workers` | Number of workers for PyTorch DataLoader. |
 
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  ```
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+ python large_scale_mask_prediction.py --image_path path/to/your/image.zarr --model_path path/to/your/model.safetensors
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  ```
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  ## Input Parameters
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  | Parameter | Description |
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  |-----------|-------------|
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  | `image_path` | Path to the OME-Zarr dataset (local or S3). Example: `s3://bucket/SmartSPIM_Dataset/Ex_639_Em_667.zarr` |
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+ | `model_path` | Path to the trained segmentation model. It can point to a .cpkt or .safetensors file. |
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  | `output_folder` | Directory where results will be saved. |
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  | `target_size_mb` | Memory allocation target for large-scale predictions. |
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  | `n_workers` | Number of workers for PyTorch DataLoader. |
model.json CHANGED
@@ -39,7 +39,7 @@
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  "notes": null
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  },
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  "intended_use": "2D tissue segmentation from SmartSPIM datasets",
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- "limitations": "Only trained on 639 channel using a resolution",
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  "pretrained_source_url": null,
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  "training": [
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  {
 
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  "notes": null
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  },
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  "intended_use": "2D tissue segmentation from SmartSPIM datasets",
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+ "limitations": "Only trained on 639 channel",
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  "pretrained_source_url": null,
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  "training": [
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  {