Camilo Laiton
commited on
Commit
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b64ac78
1
Parent(s):
19eaf37
updating readme
Browse files- README.md +2 -2
- model.json +1 -1
README.md
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@@ -49,14 +49,14 @@ The model was trained with a resolution of **14.4 microns in XY** and **16 micro
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```
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python large_scale_mask_prediction.py --
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```
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## Input Parameters
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| Parameter | Description |
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|-----------|-------------|
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| `image_path` | Path to the OME-Zarr dataset (local or S3). Example: `s3://bucket/SmartSPIM_Dataset/Ex_639_Em_667.zarr` |
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| `model_path` | Path to the trained segmentation model. |
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| `output_folder` | Directory where results will be saved. |
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| `target_size_mb` | Memory allocation target for large-scale predictions. |
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| `n_workers` | Number of workers for PyTorch DataLoader. |
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```
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python large_scale_mask_prediction.py --image_path path/to/your/image.zarr --model_path path/to/your/model.safetensors
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```
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## Input Parameters
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| Parameter | Description |
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|-----------|-------------|
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| `image_path` | Path to the OME-Zarr dataset (local or S3). Example: `s3://bucket/SmartSPIM_Dataset/Ex_639_Em_667.zarr` |
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| `model_path` | Path to the trained segmentation model. It can point to a .cpkt or .safetensors file. |
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| `output_folder` | Directory where results will be saved. |
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| `target_size_mb` | Memory allocation target for large-scale predictions. |
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| `n_workers` | Number of workers for PyTorch DataLoader. |
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model.json
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@@ -39,7 +39,7 @@
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"notes": null
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},
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"intended_use": "2D tissue segmentation from SmartSPIM datasets",
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"limitations": "Only trained on 639 channel
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"pretrained_source_url": null,
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"training": [
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{
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"notes": null
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},
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"intended_use": "2D tissue segmentation from SmartSPIM datasets",
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"limitations": "Only trained on 639 channel",
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"pretrained_source_url": null,
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"training": [
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{
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