Camilo Laiton
commited on
Commit
·
b64ac78
1
Parent(s):
19eaf37
updating readme
Browse files- README.md +2 -2
- model.json +1 -1
README.md
CHANGED
@@ -49,14 +49,14 @@ The model was trained with a resolution of **14.4 microns in XY** and **16 micro
|
|
49 |
|
50 |
|
51 |
```
|
52 |
-
python large_scale_mask_prediction.py --
|
53 |
```
|
54 |
|
55 |
## Input Parameters
|
56 |
| Parameter | Description |
|
57 |
|-----------|-------------|
|
58 |
| `image_path` | Path to the OME-Zarr dataset (local or S3). Example: `s3://bucket/SmartSPIM_Dataset/Ex_639_Em_667.zarr` |
|
59 |
-
| `model_path` | Path to the trained segmentation model. |
|
60 |
| `output_folder` | Directory where results will be saved. |
|
61 |
| `target_size_mb` | Memory allocation target for large-scale predictions. |
|
62 |
| `n_workers` | Number of workers for PyTorch DataLoader. |
|
|
|
49 |
|
50 |
|
51 |
```
|
52 |
+
python large_scale_mask_prediction.py --image_path path/to/your/image.zarr --model_path path/to/your/model.safetensors
|
53 |
```
|
54 |
|
55 |
## Input Parameters
|
56 |
| Parameter | Description |
|
57 |
|-----------|-------------|
|
58 |
| `image_path` | Path to the OME-Zarr dataset (local or S3). Example: `s3://bucket/SmartSPIM_Dataset/Ex_639_Em_667.zarr` |
|
59 |
+
| `model_path` | Path to the trained segmentation model. It can point to a .cpkt or .safetensors file. |
|
60 |
| `output_folder` | Directory where results will be saved. |
|
61 |
| `target_size_mb` | Memory allocation target for large-scale predictions. |
|
62 |
| `n_workers` | Number of workers for PyTorch DataLoader. |
|
model.json
CHANGED
@@ -39,7 +39,7 @@
|
|
39 |
"notes": null
|
40 |
},
|
41 |
"intended_use": "2D tissue segmentation from SmartSPIM datasets",
|
42 |
-
"limitations": "Only trained on 639 channel
|
43 |
"pretrained_source_url": null,
|
44 |
"training": [
|
45 |
{
|
|
|
39 |
"notes": null
|
40 |
},
|
41 |
"intended_use": "2D tissue segmentation from SmartSPIM datasets",
|
42 |
+
"limitations": "Only trained on 639 channel",
|
43 |
"pretrained_source_url": null,
|
44 |
"training": [
|
45 |
{
|