Dr. Jorge Abreu Vicente
commited on
Commit
·
e4d816f
1
Parent(s):
dd7fe74
End of training
Browse files- config.json +14 -23
- pytorch_model.bin +2 -2
- runs/Jan25_13-13-49_74c6fcc0d76a/1674652572.4056435/events.out.tfevents.1674652572.74c6fcc0d76a.6394.1 +3 -0
- runs/Jan25_13-13-49_74c6fcc0d76a/events.out.tfevents.1674652572.74c6fcc0d76a.6394.0 +3 -0
- runs/Jan25_13-13-49_74c6fcc0d76a/losses_main_loss_eval/events.out.tfevents.1674653105.74c6fcc0d76a.6394.5 +3 -0
- runs/Jan25_13-13-49_74c6fcc0d76a/losses_main_loss_train/events.out.tfevents.1674652583.74c6fcc0d76a.6394.2 +3 -0
- runs/Jan25_13-13-49_74c6fcc0d76a/other_data_epoch_epoch/events.out.tfevents.1674652583.74c6fcc0d76a.6394.4 +3 -0
- runs/Jan25_13-13-49_74c6fcc0d76a/other_data_eval_accuracy_score_eval_accuracy_score/events.out.tfevents.1674653105.74c6fcc0d76a.6394.6 +3 -0
- runs/Jan25_13-13-49_74c6fcc0d76a/other_data_eval_f1_eval_f1/events.out.tfevents.1674653105.74c6fcc0d76a.6394.9 +3 -0
- runs/Jan25_13-13-49_74c6fcc0d76a/other_data_eval_precision_eval_precision/events.out.tfevents.1674653105.74c6fcc0d76a.6394.7 +3 -0
- runs/Jan25_13-13-49_74c6fcc0d76a/other_data_eval_recall_eval_recall/events.out.tfevents.1674653105.74c6fcc0d76a.6394.8 +3 -0
- runs/Jan25_13-13-49_74c6fcc0d76a/other_data_eval_runtime_eval_runtime/events.out.tfevents.1674653105.74c6fcc0d76a.6394.10 +3 -0
- runs/Jan25_13-13-49_74c6fcc0d76a/other_data_eval_samples_per_second_eval_samples_per_second/events.out.tfevents.1674653105.74c6fcc0d76a.6394.11 +3 -0
- runs/Jan25_13-13-49_74c6fcc0d76a/other_data_eval_steps_per_second_eval_steps_per_second/events.out.tfevents.1674653105.74c6fcc0d76a.6394.12 +3 -0
- runs/Jan25_13-13-49_74c6fcc0d76a/other_data_learning_rate_learning_rate/events.out.tfevents.1674652583.74c6fcc0d76a.6394.3 +3 -0
- runs/Jan25_13-13-49_74c6fcc0d76a/other_data_train_loss_train_loss/events.out.tfevents.1674653112.74c6fcc0d76a.6394.16 +3 -0
- runs/Jan25_13-13-49_74c6fcc0d76a/other_data_train_runtime_train_runtime/events.out.tfevents.1674653112.74c6fcc0d76a.6394.13 +3 -0
- runs/Jan25_13-13-49_74c6fcc0d76a/other_data_train_samples_per_second_train_samples_per_second/events.out.tfevents.1674653112.74c6fcc0d76a.6394.14 +3 -0
- runs/Jan25_13-13-49_74c6fcc0d76a/other_data_train_steps_per_second_train_steps_per_second/events.out.tfevents.1674653112.74c6fcc0d76a.6394.15 +3 -0
- training_args.bin +1 -1
config.json
CHANGED
@@ -1,46 +1,37 @@
|
|
1 |
{
|
2 |
-
"_name_or_path": "/
|
3 |
"architectures": [
|
4 |
-
"
|
5 |
],
|
6 |
-
"attention_probs_dropout_prob": 0.
|
7 |
-
"bias_dense_layers": false,
|
8 |
-
"bias_norm": false,
|
9 |
-
"bos_token_id": 0,
|
10 |
"classifier_dropout": null,
|
11 |
-
"
|
12 |
-
"eos_token_id": 1,
|
13 |
"hidden_act": "gelu",
|
14 |
-
"hidden_dropout_prob": 0.
|
15 |
-
"hidden_size":
|
16 |
"id2label": {
|
17 |
"0": "O",
|
18 |
"1": "B-PANEL_START",
|
19 |
"2": "I-PANEL_START"
|
20 |
},
|
21 |
"initializer_range": 0.02,
|
22 |
-
"intermediate_size":
|
23 |
"label2id": {
|
24 |
"B-PANEL_START": 1,
|
25 |
"I-PANEL_START": 2,
|
26 |
"O": 0
|
27 |
},
|
28 |
"layer_norm_eps": 1e-12,
|
29 |
-
"max_position_embeddings": 514,
|
30 |
"max_length": 512,
|
31 |
-
"
|
32 |
-
"
|
33 |
-
"
|
34 |
-
"
|
|
|
35 |
"position_embedding_type": "absolute",
|
36 |
-
"return_dict": false,
|
37 |
-
"sep_token_id": 1,
|
38 |
-
"swiglu": true,
|
39 |
-
"swiglu_reduction": 2,
|
40 |
-
"tokenizer_class": "RobertaTokenizerFast",
|
41 |
"torch_dtype": "float32",
|
42 |
"transformers_version": "4.20.0",
|
43 |
-
"type_vocab_size":
|
44 |
"use_cache": true,
|
45 |
-
"vocab_size":
|
46 |
}
|
|
|
1 |
{
|
2 |
+
"_name_or_path": "michiyasunaga/BioLinkBERT-large",
|
3 |
"architectures": [
|
4 |
+
"BertForTokenClassification"
|
5 |
],
|
6 |
+
"attention_probs_dropout_prob": 0.1,
|
|
|
|
|
|
|
7 |
"classifier_dropout": null,
|
8 |
+
"gradient_checkpointing": false,
|
|
|
9 |
"hidden_act": "gelu",
|
10 |
+
"hidden_dropout_prob": 0.1,
|
11 |
+
"hidden_size": 1024,
|
12 |
"id2label": {
|
13 |
"0": "O",
|
14 |
"1": "B-PANEL_START",
|
15 |
"2": "I-PANEL_START"
|
16 |
},
|
17 |
"initializer_range": 0.02,
|
18 |
+
"intermediate_size": 4096,
|
19 |
"label2id": {
|
20 |
"B-PANEL_START": 1,
|
21 |
"I-PANEL_START": 2,
|
22 |
"O": 0
|
23 |
},
|
24 |
"layer_norm_eps": 1e-12,
|
|
|
25 |
"max_length": 512,
|
26 |
+
"max_position_embeddings": 512,
|
27 |
+
"model_type": "bert",
|
28 |
+
"num_attention_heads": 16,
|
29 |
+
"num_hidden_layers": 24,
|
30 |
+
"pad_token_id": 0,
|
31 |
"position_embedding_type": "absolute",
|
|
|
|
|
|
|
|
|
|
|
32 |
"torch_dtype": "float32",
|
33 |
"transformers_version": "4.20.0",
|
34 |
+
"type_vocab_size": 2,
|
35 |
"use_cache": true,
|
36 |
+
"vocab_size": 28895
|
37 |
}
|
pytorch_model.bin
CHANGED
@@ -1,3 +1,3 @@
|
|
1 |
version https://git-lfs.github.com/spec/v1
|
2 |
-
oid sha256:
|
3 |
-
size
|
|
|
1 |
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:32461e2a7352167c0e7e357825042ef0e491c4f39c8602d92fa8fa2da246ac1f
|
3 |
+
size 1329852593
|
runs/Jan25_13-13-49_74c6fcc0d76a/1674652572.4056435/events.out.tfevents.1674652572.74c6fcc0d76a.6394.1
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:b1942c9bb63d52262c574d4d81e338043be6c1a545ac0ac9c3477fc581cda870
|
3 |
+
size 5717
|
runs/Jan25_13-13-49_74c6fcc0d76a/events.out.tfevents.1674652572.74c6fcc0d76a.6394.0
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:6aa4fe9af6d9d998ea6ea4c71de2c31127c5285c517c567d7b2e316fdb78613f
|
3 |
+
size 4037
|
runs/Jan25_13-13-49_74c6fcc0d76a/losses_main_loss_eval/events.out.tfevents.1674653105.74c6fcc0d76a.6394.5
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:e382f6063c9220c24f16f1e6297e2f0e24ddfb27f4169a7fa7e89eac88a604d6
|
3 |
+
size 95
|
runs/Jan25_13-13-49_74c6fcc0d76a/losses_main_loss_train/events.out.tfevents.1674652583.74c6fcc0d76a.6394.2
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:ca82b9f9f9dcba60e8c88bd3e68ba95b1a80152ed73d7901aafc6c36bd608b33
|
3 |
+
size 313
|
runs/Jan25_13-13-49_74c6fcc0d76a/other_data_epoch_epoch/events.out.tfevents.1674652583.74c6fcc0d76a.6394.4
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:b9a18bda36f5f3db0f22377d55cad6b78b7d7f1e28cd27d30c7854627eb06ce0
|
3 |
+
size 423
|
runs/Jan25_13-13-49_74c6fcc0d76a/other_data_eval_accuracy_score_eval_accuracy_score/events.out.tfevents.1674653105.74c6fcc0d76a.6394.6
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:d58816a24ed68bd679a81fac726962c295b2a0980a59d378f5a43b306e2b24a6
|
3 |
+
size 109
|
runs/Jan25_13-13-49_74c6fcc0d76a/other_data_eval_f1_eval_f1/events.out.tfevents.1674653105.74c6fcc0d76a.6394.9
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:7767220b15608b4bdbd60f175a7e53a09c7c6f441058bfca6623480cd92889d5
|
3 |
+
size 97
|
runs/Jan25_13-13-49_74c6fcc0d76a/other_data_eval_precision_eval_precision/events.out.tfevents.1674653105.74c6fcc0d76a.6394.7
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:dd55a8b018aa669574459ac13d350300746550cef5ac5c8575b1187c5168d16f
|
3 |
+
size 104
|
runs/Jan25_13-13-49_74c6fcc0d76a/other_data_eval_recall_eval_recall/events.out.tfevents.1674653105.74c6fcc0d76a.6394.8
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:eb62cde58a48f604b58a8ff48e19a3b6a24c0c75c11df7fbd024746383ee22f3
|
3 |
+
size 101
|
runs/Jan25_13-13-49_74c6fcc0d76a/other_data_eval_runtime_eval_runtime/events.out.tfevents.1674653105.74c6fcc0d76a.6394.10
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:b460cdbc8b5caf3c41a7b148fb7920e04d6c61fe18184fca55b89bc0a229eb0d
|
3 |
+
size 102
|
runs/Jan25_13-13-49_74c6fcc0d76a/other_data_eval_samples_per_second_eval_samples_per_second/events.out.tfevents.1674653105.74c6fcc0d76a.6394.11
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:6045f7cb7f3d5ee1047611d1fa6ed9fea1931c2621aecb191304fcf980318e8a
|
3 |
+
size 113
|
runs/Jan25_13-13-49_74c6fcc0d76a/other_data_eval_steps_per_second_eval_steps_per_second/events.out.tfevents.1674653105.74c6fcc0d76a.6394.12
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:e25c3f9611bbe672373af750d497d8821ec3c9c19f3fd0e626c9c38b9664408e
|
3 |
+
size 111
|
runs/Jan25_13-13-49_74c6fcc0d76a/other_data_learning_rate_learning_rate/events.out.tfevents.1674652583.74c6fcc0d76a.6394.3
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:fb69e10ad3ea51b4db014f586363e52c0a565d03b8f870aa14863da4df7ac438
|
3 |
+
size 353
|
runs/Jan25_13-13-49_74c6fcc0d76a/other_data_train_loss_train_loss/events.out.tfevents.1674653112.74c6fcc0d76a.6394.16
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:171efe0ffd0d7745fbf516ed3267d254d318b028f685b4c409813cde57fa686c
|
3 |
+
size 100
|
runs/Jan25_13-13-49_74c6fcc0d76a/other_data_train_runtime_train_runtime/events.out.tfevents.1674653112.74c6fcc0d76a.6394.13
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:00b35036623666265699672d3f219deed5c2b866018e1839119ff83ea0946c0f
|
3 |
+
size 103
|
runs/Jan25_13-13-49_74c6fcc0d76a/other_data_train_samples_per_second_train_samples_per_second/events.out.tfevents.1674653112.74c6fcc0d76a.6394.14
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:8943aac6acb2c4ba093eb2887b077ddb62c350be5684988357f7c3d475512dde
|
3 |
+
size 114
|
runs/Jan25_13-13-49_74c6fcc0d76a/other_data_train_steps_per_second_train_steps_per_second/events.out.tfevents.1674653112.74c6fcc0d76a.6394.15
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:e8137446c8c4e61f82f48fa9aae114a845e6dfeb92a7c77ab21829ee70f02fd8
|
3 |
+
size 112
|
training_args.bin
CHANGED
@@ -1,3 +1,3 @@
|
|
1 |
version https://git-lfs.github.com/spec/v1
|
2 |
-
oid sha256:
|
3 |
size 3631
|
|
|
1 |
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:21aaf697c75df65d2eb5be9345e37644ec11ebb0b553a0845420f15c7671808c
|
3 |
size 3631
|