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Datasets_overview.tsv
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task Type Species Example question Example sequence Example label Dataset source link
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H3_yeast Histones yeast Can you detect whether the nucleotide sequence <DNA> exhibits a significant presence of H3 histone protein occupancy in yeast cells? AAATCCTCAGGATGTTTCTCTCCTCTGTCTTTCTTTGCCGAGCTCCATCGTGCTAGCGCATCGGACAGGAAGCAGTGAAATACAAGAAAAGTATACAAGCAGTATTCCTGCTCAAGAACCCAGTTTTCAGTTATAGTTTCCACTCCTTTCAATAGATGGGAAACTATATATCCATTAACTAAAATGGCCAGTCAGACTATCTCTTCTCCTCACTAGTGCCTAATCTCTGGTGTCGCCACTCCTGCTGCTGCTAATTATAAGGGCAAAGTCAGACCATCACTTACATTGAGGTGAATATTAAAACCAGTGAAGGTTCTGTTTTTCTCGGGAGTATTTCCGGCAGTAACACCGTTACTTATACCAAAGAGAATTTTTCTGTTGGTATGATTACTGACCCTGTCTGCTCGAAGCACGGTATCATCATTTACCGTTGTTTCTTTCGTCCTAGATATCGGTGTCTCAGAAACTCCAATTGAAGATGTACAGGTGATTAATTACGT Yes https://www.biorxiv.org/content/10.1101/2023.01.11.523679v3
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H4_yeast Histones yeast Does the H4 histone protein show a high degree of occupancy on the nucleotide sequence <DNA> in yeast? GTATAAAAGATTATATGGCATTGGATTCGCCGACAGATGGAATTATATTTGATGAAAAGGACGAAAATGGTGAAAAATTCTGGAAAAGGGCATGCAGAACCATATTTCTTTTTAGAGAGCTGTCAAGAAGTTTTCCAATAGGCGTAATAATCAGAAACGATCCGTTGATATATCGTTCATCATTTCAAAATACTAATATATTGGGAAGTTTAGTCTTCAAACTCGAACCCTTGTGCAATATACACAACAATATACCAGTATTAGGTGCCCTGGAAAGTATTATTGACATATCTGAGGCAAGAAGTGAAAACAACACTGATCTGCACGCTGTGCCGGAACTAAGTGTCAACGAGGGCGATAATATCTTCCACTATGTTGGCTACAAGAAACTTCGTGCCGATTATACGTGCTTCGATAAAAATGGAGAATTTTTAAGCGCCTCGCTTTACACTACATGGTATGTCCCGAACAGCAACAACACTAACATAGAGGACAACATC Yes https://www.biorxiv.org/content/10.1101/2023.01.11.523679v3
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H3K4me1_K562 Histones human Does the nucleosomal DNA of that sequence <DNA> in human myelogenous leukemia K562 cells exhibit the histone modification H3K4me1? GAAAGCATTTGCTGCGGGTGACATTGATGTGGATGGACCTGAGCCGAGGCTGAGAGCTGCAGCAGCTAAGTGGGGAAGCACAGCCTTAAAGCCAGAGAGACCCAGCTTCAAATTTCAGCTCTCCACTGGCTCTTGGTATGGGCAAGGGACCTGGCACAGCTACCAAATGGGGTTAGCCAGACACCCAGAAGCCCTTAGAACATGGCAGGGCCCCGGAGGCGGGGGCATGTGAGGGCGGCCCTTGGGATGTCAGGGGAGTGGGGAGCAAGGCCTCACCGAGTCCATAGTACCTCCTGCATGGAACGGACAACAGTGCCCCGCACCCCAATATACAGGGATGGCTTCTCCTGTTGGAGCTGAGCTGTAGGGAGAGAGCGTCACAGGCTCCCAGGGGTGCCCAGGGGAAAGGGGAGGGGGCTGACTCAAGGCTGATGGGTTTAGGCAGACAGGAGAGGGGTCCCACCCTCAAAGACCTAGACCCCTCCCTCTATCCATCTGGGAGCCAAGCCCAG No https://arxiv.org/abs/2311.12570
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H3K4me3_K562 Histones human Does the nucleosomal DNA of that sequence <DNA> in human myelogenous leukemia K562 cells exhibit the histone modification H3K4me3? GCAAGAAGTAATGACTTGTCATTACAGCAACCCTTTCCTGAAGAATCTTTGGCCTTTTGTTGTTATTATTGTTAAGTCAAGAGGTGCCCTTATTGGCTGCCTATTCATCTTGTTCCAAGGAATACCATTGTTTATCAGCCATTGTCACAAATCCACGTGGTCAAGACCCCCTGGTTTCCTCTCTGGCCTTGCCCCTCCGTTTTCCCGGGCAATAAAATATGTCCACTAAAATCCTGTTATTCTCGTTGACACTAGGAAGCCTGTTTTCAAGGATTATTTCCTACCATCACCCTGGCTTACAGGAGACCATGAAGCTTTTCAGTGAATCTGGTATCTTCCTCACTCATGCACACCTTATTGCTTTAGTGAAGGAGGTGTCGTTCAGGCTTTTTTATGGAACATAGCTAGCTGGTGGACTTCTGATTTCATTTTGACTTGCTCACCTTTCTGACCCTTTCCTCATTACCCTGCCAAGGCAGTTGTGCATTTCAACTTTGATTACCACAGATCAT No https://arxiv.org/abs/2311.12570
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H3K27ac_K562 Histones human In human myelogenous leukemia K562 cells, is the histone modification H3K27ac present in the nucleosomal DNA <DNA>? CGCAGAGGCCGGGGGAGCTGCAGGTCCGAACTCGGCCGGCCCGGGGCGAGGGCGGGCGGGGAGCGGGGCGGGCTAGGGCGAGCGAGGCTGCCACACCCCCGGGACTCGCTGGTGCGAGGCTCAGCATGCCGGCTGCGGAAGTCCCGCACAGGGCAGCTTCCAGGCCTCCTGTCCCTAGAGCAGTAAATGCAGATCAGCACTTCTGCCCCTCACTGTACTCCCACTCTCATCCCCTTCCTCCCTCTACCACCACCAAAAGGCCAGAATTTTTAAGTTGATTGATATTTTTTTATTAGGATAATAAAGTCAGATGCAGTATATTGTGTATGTTTTTTTGTTTCGTGTTGCGTTTTTGTAGAGATGGGGTCTCACTGTGTTGCCCAGGCTGCTCTCTTAATTCCTGGGCTCTAGTGATCCTCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCATGCCTGGCCTTGACTGTGTTGTTAAATGGCTATTTTAGACCATGAAA Yes https://arxiv.org/abs/2311.12570
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DNA methylation (HUES64) DNA methylation human In human embryonic stem cells, is the sequence's CpG site located at the center <DNA> methylated? ACCTTCTGGACTATGGTGAAACAGAAAATATCTTCACATAAAAACTAGACAGAAGCTTTCTGAGAAACTTCTTTATGATGTGTTCTTTCATCTCACAGAGTTGTAACTTTCCTTTGGTTGAGCAGTTTGGAAACACTCTTTATGGGGAATCTGCAAGTGGATATTTGGAGTCCTTTGTGGCCTATAGTGGAAAACGAAATATCTTCACATAAAAACTAGACAGAATCATTCTGAGAAACTTCTTTGTGATGTGCACGTTCATCACAAAGAGTTGAACATTTCTTTCAATTCAGCAGTTTGGAAACAGTCCTTTTGTAGAATCTGTGAAGGGATATTTCTCAGCCCATTGATGCCTATGGATGAAATAGGAAATATTCTCACATTAAAAACTAGACAGAAATTTCTGAGAAACTTCTTTGTGATATGTGGTTTCATCTCACAGAGTTGAACCGTTCTTTTGGTTGAGAAGATTGGAAACACTCTTTTTGTAGAATCTGCAAGTGGATATTTGG No https://arxiv.org/abs/2311.12570
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Chrom. Accessibility (HepG2) DNA accessibility human Does the accessibility profile of human hepatoma HepG2 cells reveal an open chromatin state for the sequence <DNA>? AAATAAAATATGAAAATAAACTATAAGTAATGACATATTTATGGTTTTATTTAAAACACTGTGAATTAAAGTTTTTGAAACTATTACCTTTATAAAAGGCTAATTGGTTTTAGAAAAATGAATACTACTCCTTTCCACTCAGAAAAATACAGATTTCAATTCCTCCCATCCTTACTTGCTAGGCAAACATAAGAACCAAACAGGATCAAAAGGCTTCTTTATAAGTAAATATATAACATCCACCTATTCGGTATTTTCAAAATTTAAGGTCTCACAACTCCAACTCCTTTAACATATGACTCATCGTGAAAAGACTGAAGCAAGGTTCCTACAATGTACATTCATTTACTAAAATAACAAGCCCTTAACTCTTAGTGGTATAATAATAGAAACATATTGTACTTCAGAAAAGACTTATTTTACAAGAGCAACAAAACTACATTTTAAAAAACTGTTACAATGAATAAAAGCTTATGAAAATCCCTGTAAAGAAGAATGCCCCCCAATTTCAAATTTCAATTTTTAAATCTGCGGAAATTAACCACTCATGTATAACAAATATTTATTTTATAACAGACAATTATCAGAGCAGATTCAGCT Yes https://academic.oup.com/nargab/article/5/2/lqad026/7092956
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Promoters Promoters human/mouse Does the nucleotide sequence <DNA> contain any motifs commonly found in promoter regions from human or mouse cells? ACCGTTGAGATAGAATAGTCGAGCGACCGTAGCAGTTGTACTACATTTAACATTGGGTTTTACCTAGGCGCTTCCTCAGCTACAGCGGCTAAAGCAGTTACTCAGCTAGATGGGTTGCTAAGTAAGCTCTTCAGATCAGAGCATGACGAAACGACTTGACGATGCGGCAGTGGGAGCTGGGCCACGTGGAGACTACTACATCTATGAGGATAAGGTTCCGGCCCGGTCGACTGCAACAGCGCCACCCCCAGAACCTCCTAAGCTGGTCAACGATAAGCCCCACAATTTCGTCTCTGGAAT No https://www.biorxiv.org/content/10.1101/2023.01.11.523679v3
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TATA promoters Promoters human/mouse Can you determine if the promoter region of this DNA sequence <DNA> includes a TATA box motif in human or mouse cells? AGAAAGAACTACTTTTATGTTCTTAAGATATTAATAGTTCACAGCTTTGAGAAATCAAAGAGTATCTGACAGTACAATTACTAATTAACTTAGATTCCCAGAGAGAAACATTTATGTAAACTACTTTCAGGGTTAAGGCTTTTAACAATTGTATGTTGAGCAGAAGATTATTAAACACTGATAGGCTGGTAAGGGTGCAATAAAACTTTATGAGTAGGTCAATATATACCTAAGCAGCTTTCCTTGATCATTATTTTGGCAGCCTTATCCAAGTCTGGTACAACATAGCAAAGAGAACAG Yes https://www.biorxiv.org/content/10.1101/2023.01.11.523679v3
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Non-TATA promoters Promoters human/mouse Is there a promoter in human or mouse cells in the DNA sequence <DNA> that lacks a TATA box? TAATAGACAGACTGTGAATCTTGGCTGCTGCGGAGCGGGGAAGGAGAGATGAGGGCCCAGGCACGATGGGGGGAACCAGACACAGTCCAGCCTGGCGGGGACGGAGCTGGGGGTCTGCCTTCCCAGGCTGACCACTTATTGCCCACCCATCCCCAACATAATTAGCAGGCAGGATGCCTGGGTTTCTCACGGGGGTGGGGGCAGGGCCTCTGTCCGGGGACGTCACCCGTTAAACTTCCTCTCTCAGCCACACAGGAAGCTGAGCCGGCTTGGGGCCCAGCATACACAGGCCCCCAGGAC Yes https://www.biorxiv.org/content/10.1101/2023.01.11.523679v3
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Enhancers Enhancers human Can regulatory elements that act as enhancers in human cells be found within this sequence <DNA> ? TTTATTTACTTATTTATTTACTCTGTCGCCCAGGCTGGAGTGCAGTGGCATGATCTCGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGCTATTCTTCTGCCTCAGCCTCAGCTTTGCAAACCTAGCCCAAGTAGCTGGGTTTACAAACATGTGCCATCACGCCCGACTAATTTTTATATTTTTGCTAGAGATGGGGTT Yes https://www.biorxiv.org/content/10.1101/2023.01.11.523679v3
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Enhancer types Enhancers human Does the sequence <DNA> contain an enhancer active in human cells, and if so, how strong is the enhancer element? AATTTTCTCATTTTCTCATAAAGTTTAACAGTTGTTTATTTGAGTCAGAATTCAAATAAGCTTCTGTACATTACAATTGGTTTTAAGTTCTTATAAGACTCTATAGGTTTTCCCTTCATAATTTTTCTTGCAATTTATTTGTTAAAGAAATTGGGTCATTTGTCCTATTGAGTGCTCCACTGTCTGTTTTTATTATTGTA No https://www.biorxiv.org/content/10.1101/2023.01.11.523679v3
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Enhancers (plants) Enhancers plant Are there any enhancer motifs from cassava plant seedlings present in the nucleotide sequence <DNA>? AGGGATTGAAGTAGCACAGGCTAAAATGGATATTGCTATTTCTCAACGAAAATATGTTTTGGATATATTAGAAGAAACAAGAATGTTAGATTGTAGACATGTGGATACTCCCATAGACCTAAATGTCAAACTTGCTCCTAAATAGGGGGAGTCACTTAAAGATTCTGGTACATATAAAAGATTGGTTGGCAAACTCAACTATCTCACTATCACATGACCAGTTATTTTCTTTGGTGTAAGTGTGGTTAGTCAATTTCTTCAAGATCCATACAGTAACCACTGGGATGCAGTTATTCGTATTCTTAGATATATCAAAGGAGCTCCAAAAAAAGGTCTACAATATGAAGACAATAGTCACTCACAAATTGTTAGGTATTCTGATGCAGATTGGACAAGTTTTCCTTTAGATAGACGATCTATTTCAAGATATTGTATTATGATTGGAGGGAATCCTATATCCTGTAAAAGTAAAAAACAGGTTGTGGTTGTAAGATTAAGTGCAAAACTAGAATATAGAGCTATGGCTTTGACAACATGCAAACTTATTTGGCTGAAACTTCTTCAGAAATTGAAGTAGGGCGACACTGGCCAAATGAAGCTGAGATGTGATAATCAAGTTGCTCTTCATATTGCATCGAATCCAGTTTTTCATGAGAAGACGAAGTATATAGAGGTGGATTGTCACTTTGTTAGACAAAAACTGAGTCGGGATCCATTTCTACTAGGTTTATCAACTTAAATGATCAGCTAGCTGATGTTTTTACAAATTCACTCTGAAATTCATGAATCGAATATATTTATAACAAGTTTAGAGTATATGACATATACACTCAAGTTTACGAGGGAATGTTGAAATACTTTCTATAAATAGTCTAGATTTATAGTGACTGTGTGTATAATTAAGTGTTTAGATGATGTGATATGATTGAGATATGATTAGGTTATAATTAAAGAATTGATTTCTTTTATTTCCTATTATATATTCATGTAAGTAATATAT Yes https://www.biorxiv.org/content/10.1101/2023.10.24.563624v1
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Splice sites Splice sites human/mouse/rat/fly/zebrafish Does this sequence <DNA> have an acceptor or donor splice site from human cells present? AAAAAAAAAAAAAAATTCCTTTAAAGGAATTGTATTAAGTTCTTATCAGTGTTGTATTTTTCTTCCTAGATCTCATATTTTGGATTCTGGATATATTATAATGAGTGACACTTTGACAGCGGATGTCATTGGTCGAAGAGTTGAAGTTAATGGAGAACATGCAACAGTACGTTTTGCTGGTGTTGTCCCTCCCGTGGCAGGTAAGCAATTATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTTTGCAGCTGTTTCTGTGTAAGCTTCTCAGTAGCACTTTATACCACAAATTTTGACGAAATTAACAACTAATTTATAGGTGCCTCCTGTATCCAGTTTTATCTGAGTGACAGTATCCTGTGGTATCTATGATT Yes https://www.biorxiv.org/content/10.1101/2023.01.11.523679v3
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Splice donors Splice sites 147 species Can you determine if the sequence <DNA> possesses a donor splice site motif? TAGTTATAAGGTACTACATGGCAAGTACTAGAACCAGCTGCAGGTCAGGATTTGTAAGTAATGCCTTGTTGGGGCTGACGTGAGCTTTTTCACCAAGCCATTGGCATGTGTAGGAGTTAGGAGCAGTGCACCAGCAATGCGGAGTGCCGGCTTCTGTACTAGAGCCAGCCTCCGACCAGCGAGTGAGCTGCTACCCCTCCTCTCAACACCCACACTGCTTCATGCTTCTGGGCAGTTTCGTTATTCCAAAGCACAGATGGTGTAGAGGGCTGGCAGCTGCCACTCCGTTGTGCAGAGGCTCCTTCGCTCACCCATCACACACATGTTCCTGGAGAACCTGCTCTAGTGCTGGTGCTGGGGGGCCGAGGAACGCGGGAAGGAGGTAGCCTCTGCCTTTACGACACTGATGCTCCGTAGTCGGGGAGACGAGAAAGTAAACAAAGAAGTAAAGTGTGCCGTGCTACTCAGGGTGGTGCCAAGGACAGGGGAGGCGCAGAGAGCCAGAGGGTAGAGCTCGGCTATAGCCCAGTCCATGGCCCTTGAGAACGTGGTCATCAAGTAGGAGGTTCTGGCCTCAGGGAGGGGAGGGAGGGAGACCTG No https://www.biorxiv.org/content/10.1101/2023.01.11.523679v3
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Splice acceptors Splice sites 147 species Is there any evidence of an acceptor splice site in this sequence <DNA>? TGGGGGAAAGTTTATCCATTGGGGGAAAAAATGGAATATTATGATTCCAGTAATGATGAGACCTTGGGAGGTGAGAATCCTTCTACTTTAAAATCCTTGAGGCCCTGGATTCAAACCCCAATATTGAGAAAATAATCTGTAGGCAGTATATAATAGGACAGTCTGGTTGTTTGAAAAATATAAAACCAAATTGCCAAGAAAACGCCATTCACTGGTAGTACTTCGTGCCTCTGACAGAAACCCTTAATTTAGGGTCTCTCCGCTCACACATCCAGTGACTACAGTTTCTCTTTTCCTCCTAGAAAAAATACCGCACGAAAATAGAAACTCTCAACTTCACTCCTGTGGATGACAGAGTGGATTACGTGACAGCGAAACAAAGCAGTGAGATCCGAGATGACGTAAGTAGATAGTTGTAAAATCGTACAGCAATGCCGAGACTGTGGCCAAAACTCTCCTCCTGCAATGATTGAGCTAATAGTCCCATCACCGAAATTATCTATGCTAGTAACATAGAGAGATTTCTTAACATCAAGTAATTTCCCTCCATGCCTCTCATTTTTAGATTAAATATCGGAAAGATTGGAACGCCATCAAATC Yes https://www.biorxiv.org/content/10.1101/2023.01.11.523679v3
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lncRNAs lncRNA plant Does the nucleotide sequence of Sorghum bicolor plant <DNA> contain any lncRNA? TCGTGGGCATGAAACATTTCTCCTCCCACATTCATAATGACATCAACACCCTCTTGGTCCTCAAGAGTGAACCAAAATGTAAAAATGATAGCCAACATTTTGAGTTTGGAACTTGGATAGAGTGGTGGGTCATTTTTTTCTACTTGTCCACAATGTCCAATAGCAAGAGGAAAATTATTTTGCTTATTTGTGCTCAGTCCACATGCTCCTTCATCTGCCCTGTCCATTGATCCTAGTAGCTCACGCTTATCACAATGTCATGCACACCATCGTCCAACCGCCTAAGCTCAACATTAGATACAATGGACTGTGATTTAACAAAGGATCTTGTCATTGTGATTAGTAGCACTCCACGGGATAATACCCCACTTTTGTTTGAATTTCATAATTACAAAGCATAGGTTTCCAAGAAACTGTGTGGTTCATGCAAGCAGTATTTTCGTCCAAATGTGTGTATGCATTTATCATATTTAACAGAACACACATAGAAGAGCATAAACAGTTGTATTAGCTTAGTGCTATAGTGCAAGGTAAAATTAGTTGTTAACTGCTATGTCAAAGCATATATTGATTTGTCAAATAAGCAAAATTACTCAGTTTTCGCTTTTGCTTACCAAGACGGACTTGGTAGATAAATTCTGATTCTTAGTGTGCCACAATGGGTTCTAAATTGCGAAATTAGTCACATATATATTCCCTATTTCTGAATTGCTAACAAGAGTTCATGGCTTCGTGCTCAAGAGAAAACTGGGGGGAGAGGGGGAGGGGGGGGACAAAAGAATCCTTACCTTCTGGCAAATGTCATTGCAGTCTGAGACTTGACTGGCCAAGGCACGTTGAAGTCTGCCAGCTCCCATT Yes https://www.biorxiv.org/content/10.1101/2023.10.24.563624v1
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Promoter strength (tobacco leaf) Promoter activity plant What is the promoter strength exhibited by the given DNA sequence <DNA> in plant tobacco leaves, measured within the range of -10 to 10? TGAGTGAAGGCAGAATTGACCCATGCAGCTTCCTTTCTTTCACCACTCACTTGCTAGGAAACTACAAAAATAGAAAAAGAAAACTCACGGCAACCAAAAACGCGAACTCCTAGAGGGTTTCGAACACTTTGAAATTTGTATCAGACATCAAATGAAATCTTTAACTTCTT -0.54 https://www.biorxiv.org/content/10.1101/2023.10.24.563624v1
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Promoter strength (maize protoplasts) Promoter activity plant What is the promoter strength exhibited by the given DNA sequence <DNA> in plant maize protoplasts, measured within the range of -10 to 10? CAGTACTACCCATTGCTGCAGGCTGCTTGCCTGCCTACAAATATGGCCACCAGTGACCTGCAAAGCCATCAGCCATGGCAGATCGAGCATCTCCTCTAAGTTCTAGTAGTAGGGATAGGAATCAGGGTCAGTTTCCTCTCCTGGCTGTAGCAGCAGCAGCAGCAGTGGAA 2.68 https://www.biorxiv.org/content/10.1101/2023.10.24.563624v1
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Dev enhancers Enhancer activity fly Compute the developmental enhancer activity of the specified <DNA> sequence from Drosophila melanogaster S2 cells and provide the result on a scale of -10 to 10. AACATACCCTGCTCTAGCGTATTGCTTTTTAATTGGCAGAAAAATATGTGCTCCGGTCGGTCGGTATTAATATATGTATAAATCCAACCAATATGACACACATTTCATTCAATTTATGACGCACAGCTGACACACTTTTCCCACACTATCTCACCCACATGCATATACACACATACACAGGTTTTTCTGTGCGAAAAATGAATTACGATTCGTCGCGTTTTTTTTTTCTGGTCGCTTGTTTTCGTTTGG 3.42 https://www.nature.com/articles/s41588-022-01048-5
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Hk enhancers Enhancer activity fly What is the housekeeping enhancer activity score for the provided DNA sequence <DNA> originating from Drosophila melanogaster S2 cells, presented as a numeric value between -10 and 10? ATGCCTGTTGGCCTGCGTAAGGAGCTACCATCAACATCAGCATCGCCATCACAATGCCAGGATGATCAGGGCAACAAGAGTTTATAAAATCATGTGACAAATGAGGGTTGCTTAGCTTACTTAGTCGTCCTGTCATCTGTCCTCCTATTTATCTGTCTGGTCCATCTGTCATTTGTCTGCAAACACATGGTCGTTATGACGCATGCCTCACTGTGGCAAATTGCAGTGCCAATTATGTACCATTTTCCA -0.38 https://www.nature.com/articles/s41588-022-01048-5
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RNA Polyadenylation Polyadenylation human an you determine the polyadenylation ratio of the proximal site of the given RNA sequence <DNA> in human HEK293 cells within the range of 0 to 1? ATTACCTGCGGCCGCAATTCTGCTCGGACTTGTGCACTCTAGTTCTGGTAACTGACCTTCAAAGCTAAAATATAAAACTATTTGGGAAGTATGAAACGATGTCTCGTGATCTGGTGTACCCTTATCCCTGTGACGTTTGGCCTCTGACAATACTGGTATAATTGTAAATAATGTCAAACTCCGTTTTCTAGCAAGTATTAAGGGA 0.42 https://genomebiology.biomedcentral.com/articles/10.1186/s13059-022-02799-4
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RNA degradation (human) RNA degradation human What range of degradation rate does the human RNA sequence <DNA> fall within, considering values from -5 to 5? GCGCTGAGGATCAGCCGCTTCCTGCCTGGATTCCACAGCTTCGCGCCGTGTACTGTCGCCCCATCCCTGCGCGCCCAGCCTGCCAAGCAGCGTGCCCCGGTTGCAGGCGTCATGCAGCGGGCGCGACCCACGCTCTGGGCCGCTGCGCTGACTCTGCTGGTGCTGCTCCGCGGGCCGCCGGTGGCGCGGGCTGGCGCGAGCTCGGCGGGCTTGGGTCCCGTGGTGCGCTGCGAGCCGTGCGACGCGCGTGCACTGGCCCAGTGCGCGCCTCCGCCCGCCGTGTGCGCGGAGCTGGTGCGCGAGCCGGGCTGCGGCTGCTGCCTGACGTGCGCACTGAGCGAGGGCCAGCCGTGCGGCATCTACACCGAGCGCTGTGGCTCCGGCCTTCGCTGCCAGCCGTCGCCCGACGAGGCGCGACCGCTGCAGGCGCTGCTGGACGGCCGCGGGCTCTGCGTCAACGCTAGTGCCGTCAGCCGCCTGCGCGCCTACCTGCTGCCAGCGCCGCCAGCTCCAGGTGAGCCGCCCGCGCCAGGAAATGCTAGTGAGTCGGAGGAAGACCGCAGCGCCGGCAGTGTGGAGAGCCCGTCCGTCTCCAGCACGCACCGGGTGTCTGATCCCAAGTTCCACCCCCTCCATTCAAAGATAATCATCATCAAGAAAGGGCATGCTAAAGACAGCCAGCGCTACAAAGTTGACTACGAGTCTCAGAGCACAGATACCCAGAACTTCTCCTCCGAGTCCAAGCGGGAGACAGAATATGGTCCCTGCCGTAGAGAAATGGAAGACACACTGAATCACCTGAAGTTCCTCAATGTGCTGAGTCCCAGGGGTGTACACATTCCCAACTGTGACAAGAAGGGATTTTATAAGAAAAAGCAGTGTCGCCCTTCCAAAGGCAGGAAGCGGGGCTTCTGCTGGTGTGTGGATAAGTATGGGCAGCCTCTCCCAGGCTACACCACCAAGGGGAAGGAGGACGTGCACTGCTACAGCATGCAGAGCAAGTAGACGCCTGCCGCAAGGTTAATGTGGAGCTCAAATATGCCTTATTTT 0.14 https://genomebiology.biomedcentral.com/articles/10.1186/s13059-022-02811-x
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RNA degradation (mouse) RNA degradation mouse Assess the degradation rate of the mouse RNA sequence <DNA> within the scale of -5 to 5. GGGAAGCGGGCTGTGCGCGCGTGGAGCAGTGGGAACGCCGCTGAGGCTGCGAGTACGCCGTTGCCTTAACAACCGGTGGCAGAGTCCGTTGGGTGATGGCCTCTAATTTTAAGAAGACAACCATGGCATCCAGTGCCCAGAGAAAAAGGATGAGTCCTAAGCCTGAACTTACTGAAGACCAGAAACAGGAAATCCGGGAAGCTTTTGATCTCTTTGATGCTGATGGAACTGGAACTATAGACATCAAAGAACTGAAGGTGGCAATGAGGGCCCTGGGCTTTGAGCCCAAGAAAGAAGAAATTAAGAAAATGATAAGTGAAATTGATAAAGAAGGAACAGGAAAAATGAACTTCAGTGACTTTTTGACAGTGATGACTCAGAAAATGTCTGAGAAAGACACTAAAGAAGAAATCCTGAAAGCTTTCAAGTTGTTCGATGATGATGAGACTGGGAAAATATCATTCAAGAATCTTAAGCGCGTGGCCAAGGAGCTGGGTGAGAACCTGACAGATGAGGAACTGCAGGAAATGATTGATGAAGCTGATCGAGATGGAGATGGTGAGGTCAATGAGCAAGAGTTCCTGCGCATCATGAAAAAGACCAGCCTCTATTAAGATCAGTGTTTCTTTTTCTACTGCAAGCACATGTGACTAGATTTAGTGCCTGGCATTTTGTGAAATATGGCTTTTGAAAGCCTCCCTCCCCCAACCTGGGGTAACTTTAGCCATGACCTTGAATCTATTTTTGACTTTTGGAAGTGTTCTTTGATATTAAGTTCTTTGTACATTTACCTGCTGACTAAATCAACAGGGCAGAACAAGAGCACATAGAGTGGGGAAAAGGGTCTGAAAGTGTGACTGTGGCCACCCCACCTTCCATTACTTCACCTTGCTCATGCATATCCACTCGACTGAAAACATGCAGTGGCTTCTTAGTTGTCCATGTATCCATGTCACCATAAGCAGTGGTTGTTCTTAAAGTGGTTTTGGTTTTCATTTGACACCACAGTACAGTTTTCTCTTTTACAAAACCCAATGAGTGCTTGCTGTGGCATTTGGATGTGTGTTAATGTATTTGTTTGGTCTTTAAAAAAATAAAACCTTTCTTAATTTAAGCTCTCATTCTTTAAAGGATGAGTATTTTTTAGCTTTAACTGTGAGTTCACCTTGTAAACAACTGTGTTGAGGACAGCCTGGTACATATATACAATTTGTCATCGGCCTATGGATTAAAAAAGGGTAATAATTCTTTGTAACTTTTCTGCCATAAATAGTTTTTTTGCTTTC 1.84 https://genomebiology.biomedcentral.com/articles/10.1186/s13059-022-02811-x
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Protein fluorescence Protein fitness human Assess the fluorescence level of the protein with the CDS sequence <DNA> within the scale of -5 to 5. AGCAAGGGCGAGGAGCTGTTCACCGGGGTGGTGCCCATCCTGGTCGAGCTGGACGGCGACGTAAACGGCCACAAGTTCAGCGTGTCCGGCGAGGGCGAGGGCGATGCCACCTACGGCAAGCTGACCCTGAAGTTCATCTGCACCACCGGCAAGCTGCCCGTGCCCTGGCCCACCCTCGTGACCACCCTGTCGTACGGCGTGCAGTGCTTCAGCCGCTACCCCGACCACATGAAGCAGCACGACTTCTTCAAGTCCGCCATGCCCGAAGGCTACGTCCAGGAGCGCACCATCTTCTTCAAGGACGACGGCAACTACAAGACCCGCGACGAGGTGAAGTTCGAGGGCGACACACTAGTGAACCGCATCGAGCTGAAGGGCATCGACTTCAAGGAGGACGGCAACATCCTGGGGCACAAGCTGGAGTACAACTACGACAGCCACAACGTCTATATCATGGCCGACAAGCAGAAGAACGGCATCAAGGTGAACTTCAAGATCCGCCACAACATCGAGGACGGCAGCGTGCAGCTCGCCGACCACTACCAGCAGAACACCCCCGTCGGCGACGGCCCCGTGCTGCTGCCCGACAACCACTACCTGAGCACCCAGTCCGCCCTGAGCAAAGACCCCAACGAGAAGCGCGATCACATGGTCCTGCTGGAGTTCGTGACCGCCGCCGGGATCACTCACGGCACGGACGAGCCGTACAAGTGA 1.3 https://arxiv.org/abs/1906.08230 / https://arxiv.org/abs/2206.02096
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Protein stability Protein fitness human What is the stability of the protein with the CDS <DNA>, measured on a scale from -5 to 5? ACCACCATCAAAGTTAATGGTCAGGAATACACCGTGCCGCTGTCTCCGGAACAGGCTGCGAAAGCGGCGAAAAAACGTTGGCCGGACTACGAAGTTCAGATCCACGGTAACACCGTTAAAGTTACCCGT 0.85 https://www.science.org/doi/10.1126/science.aan0693
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Protein meltome Protein Melting human Within the range of 0 to 100, what is the melting point exhibited by the protein with the given CDS sequence <DNA>? ATGCACTATTTCACCATTTCCGATTTGGCGCACGAGTTTGATGTGAGCACACGGACGATCCGCTATTATGAAGAACGCGGATTGCTCTCCCCGATTCGGACCGAGTCAGGGCAGCGGCTGTATACGAAAAAGGAGCGGGCGAAACTCAAGCTCATTTTGCGCGGCAAACGGTTCGGCTTTTCGCTCGACGAAATTCATGAGATGATTGCGCTGTTTGATGAGGATCGCACGGGGAAGAAACAGCTTGAAAAAACGGTTGAATACGGGCGGCGGAAATTGAAGGAGGTGAGTGAGCGGATTGAGGATTTGCTTCAGCTGAAGGCGGAGATGGAAGCGCTGCTTTCCGATTTTGAACAGCGATTGCGACAATGGGAGGGATCGGATGGATGA 66.97 https://www.biorxiv.org/content/10.1101/2021.11.09.467890v1
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