updating weights medgemma
Browse files- README.md +14 -4
- exp2-1_medgemma/densenet_112.pt +3 -0
- exp2-1_medgemma/densenet_14.pt +3 -0
- exp2-1_medgemma/densenet_2.pt +3 -0
- exp2-1_medgemma/densenet_224.pt +3 -0
- exp2-1_medgemma/densenet_28.pt +3 -0
- exp2-1_medgemma/densenet_4.pt +3 -0
- exp2-1_medgemma/densenet_56.pt +3 -0
- exp2-1_medgemma/densenet_7.pt +3 -0
- exp2-2_medgemma/swinTF_112.pt +3 -0
- exp2-2_medgemma/swinTF_14.pt +3 -0
- exp2-2_medgemma/swinTF_224.pt +3 -0
- exp2-2_medgemma/swinTF_28.pt +3 -0
- exp2-2_medgemma/swinTF_4.pt +3 -0
- exp2-2_medgemma/swinTF_56.pt +3 -0
- exp2-2_medgemma/swinTF_7.pt +3 -0
README.md
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@@ -89,6 +89,12 @@ insurance_paper_weights/
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├── exp2_medgemma/ # MedGemma Resolution — MedMamba
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│ └── mamba_2.pt ... mamba_224.pt (8 files)
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│
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├── exp3_medgemma/ # MedGemma Demographics — MedMamba
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│ ├── sex.pt, age.pt, race.pt
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│ ├── sexage.pt, sexrace.pt, agerace.pt
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| Experiment | Description | Model | Config | # Checkpoints | HF path | Available? |
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|------------|-------------|-------|--------|---------------|---------|------------|
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-
| **exp2** | Resolution | MedMamba | 8 resolutions | 8 | `exp2_medgemma/mamba_{N}.pt` |
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| **exp3** | Demographics (addDemo) | MedMamba | 7 demo combos | 7 | `exp3_medgemma/{combo}.pt` | Yes |
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| **exp3-1** | Demographics (addDemo) | DenseNet | 7 demo combos | 7 | `exp3-1_medgemma/{combo}.pt` | Yes |
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| **exp3-2** | Demographics (addDemo) | SwinT | 7 demo combos | 7 | `exp3-2_medgemma/{combo}.pt` | Yes |
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@@ -147,9 +155,9 @@ insurance_paper_weights/
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| **exp4-1** | Freq filtering (HP+LP) | SwinT | 8 freq x 2 | 16 | `exp4-1_medgemma/{highpass,lowpass}/{F}Hz.pt` | Yes |
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| **exp4-2** | Freq filtering (HP+LP) | DenseNet | 8 freq x 2 | 16 | `exp4-2_medgemma/{highpass,lowpass}/{F}Hz.pt` | Yes |
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**MedGemma:
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**Total: 153 original +
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- **Demo combos** (exp3): `sex`, `age`, `race`, `sexage`, `sexrace`, `agerace`, `sexagerace`
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- **Frequencies** (exp4): 1, 5, 10, 25, 50, 100, 200, 400 Hz
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@@ -219,6 +227,8 @@ Weights in JAMA_codes were trained on ORCD. Weights marked with (*) were trained
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| `exp4-1/{highpass,lowpass}/{F}Hz.pt` | `JAMA_codes/{F}{HighPass,LowPass}_swin_freq/Rand123/...` |
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| `exp4-2/{highpass,lowpass}/{F}Hz.pt` | `JAMA_codes/{F}{HighPass,LowPass}_densenet_freq/Rand123/...` |
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| `exp2_medgemma/mamba_{N}.pt` | `JAMA_codes_medgemma/{N}_mg_exp2/mamba/Rand123/...` |
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| `exp3_medgemma/{combo}.pt` | `JAMA_codes_medgemma/{combo}_mg_exp3/mamba/Rand123/...` |
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| `exp3-1_medgemma/{combo}.pt` | `JAMA_codes_medgemma/{combo}_mg_exp3-1/densenet/Rand123/...` |
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| `exp3-2_medgemma/{combo}.pt` | `JAMA_codes_medgemma/{combo}_mg_exp3-2/swinTF/Rand123/...` |
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@@ -244,7 +254,7 @@ All 153 original bootstrap evaluations complete (n_bootstrap=20, sample_size=100
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| Experiment | Evaluations | Status |
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|-----------|-------------|--------|
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| **MedGemma exp2** |
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| **MedGemma exp3/3-1/3-2** | 21 (3 models x 7 combos) | Done |
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| **MedGemma exp4/4-1/4-2** | 48 (3 models x 2 directions x 8 freqs) | Done |
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├── exp2_medgemma/ # MedGemma Resolution — MedMamba
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│ └── mamba_2.pt ... mamba_224.pt (8 files)
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│
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├── exp2-1_medgemma/ # MedGemma Resolution — DenseNet
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│ └── densenet_2.pt ... densenet_224.pt (8 files)
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│
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├── exp2-2_medgemma/ # MedGemma Resolution — Swin Transformer
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│ └── swinTF_4.pt ... swinTF_224.pt (7 files)
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│
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├── exp3_medgemma/ # MedGemma Demographics — MedMamba
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│ ├── sex.pt, age.pt, race.pt
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│ ├── sexage.pt, sexrace.pt, agerace.pt
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| Experiment | Description | Model | Config | # Checkpoints | HF path | Available? |
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|------------|-------------|-------|--------|---------------|---------|------------|
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| **exp2** | Resolution | MedMamba | 8 resolutions | 8 | `exp2_medgemma/mamba_{N}.pt` | Yes |
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| **exp2-1** | Resolution | DenseNet | 8 resolutions | 8 | `exp2-1_medgemma/densenet_{N}.pt` | Yes |
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| **exp2-2** | Resolution | SwinT | 7 resolutions | 7 | `exp2-2_medgemma/swinTF_{N}.pt` | Yes |
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| **exp3** | Demographics (addDemo) | MedMamba | 7 demo combos | 7 | `exp3_medgemma/{combo}.pt` | Yes |
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| **exp3-1** | Demographics (addDemo) | DenseNet | 7 demo combos | 7 | `exp3-1_medgemma/{combo}.pt` | Yes |
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| **exp3-2** | Demographics (addDemo) | SwinT | 7 demo combos | 7 | `exp3-2_medgemma/{combo}.pt` | Yes |
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| **exp4-1** | Freq filtering (HP+LP) | SwinT | 8 freq x 2 | 16 | `exp4-1_medgemma/{highpass,lowpass}/{F}Hz.pt` | Yes |
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| **exp4-2** | Freq filtering (HP+LP) | DenseNet | 8 freq x 2 | 16 | `exp4-2_medgemma/{highpass,lowpass}/{F}Hz.pt` | Yes |
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**MedGemma: 92 checkpoints**
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**Total: 153 original + 92 MedGemma = 245 unique checkpoints**
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- **Demo combos** (exp3): `sex`, `age`, `race`, `sexage`, `sexrace`, `agerace`, `sexagerace`
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- **Frequencies** (exp4): 1, 5, 10, 25, 50, 100, 200, 400 Hz
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| 227 |
| `exp4-1/{highpass,lowpass}/{F}Hz.pt` | `JAMA_codes/{F}{HighPass,LowPass}_swin_freq/Rand123/...` |
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| `exp4-2/{highpass,lowpass}/{F}Hz.pt` | `JAMA_codes/{F}{HighPass,LowPass}_densenet_freq/Rand123/...` |
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| `exp2_medgemma/mamba_{N}.pt` | `JAMA_codes_medgemma/{N}_mg_exp2/mamba/Rand123/...` |
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| `exp2-1_medgemma/densenet_{N}.pt` | `JAMA_codes_medgemma/{N}_mg_exp2/densenet/Rand123/...` |
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| `exp2-2_medgemma/swinTF_{N}.pt` | `JAMA_codes_medgemma/{N}_mg_exp2/swinTF/Rand123/...` |
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| `exp3_medgemma/{combo}.pt` | `JAMA_codes_medgemma/{combo}_mg_exp3/mamba/Rand123/...` |
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| `exp3-1_medgemma/{combo}.pt` | `JAMA_codes_medgemma/{combo}_mg_exp3-1/densenet/Rand123/...` |
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| `exp3-2_medgemma/{combo}.pt` | `JAMA_codes_medgemma/{combo}_mg_exp3-2/swinTF/Rand123/...` |
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| Experiment | Evaluations | Status |
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|-----------|-------------|--------|
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| **MedGemma exp2/2-1/2-2** | 23 (8+8+7 resolutions) | Done |
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| **MedGemma exp3/3-1/3-2** | 21 (3 models x 7 combos) | Done |
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| **MedGemma exp4/4-1/4-2** | 48 (3 models x 2 directions x 8 freqs) | Done |
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exp2-1_medgemma/densenet_112.pt
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exp2-1_medgemma/densenet_14.pt
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exp2-1_medgemma/densenet_2.pt
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exp2-1_medgemma/densenet_224.pt
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exp2-1_medgemma/densenet_28.pt
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exp2-1_medgemma/densenet_4.pt
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exp2-1_medgemma/densenet_56.pt
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exp2-1_medgemma/densenet_7.pt
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exp2-2_medgemma/swinTF_112.pt
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exp2-2_medgemma/swinTF_14.pt
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exp2-2_medgemma/swinTF_224.pt
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exp2-2_medgemma/swinTF_28.pt
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exp2-2_medgemma/swinTF_4.pt
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exp2-2_medgemma/swinTF_56.pt
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exp2-2_medgemma/swinTF_7.pt
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