Datasets:

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AIBIC

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MLOmics

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AI for Bio Informatics and Care 2

Error code:   DatasetGenerationCastError
Exception:    DatasetGenerationCastError
Message:      An error occurred while generating the dataset

All the data files must have the same columns, but at some point there are 1 new columns ({'Label'}) and 672 missing columns ({'TCGA.AR.A0U2.01', 'TCGA.E9.A1RB.01', 'TCGA.D8.A1X8.01', 'TCGA.PL.A8LZ.01', 'TCGA.E2.A1BC.01', 'TCGA.E9.A1N3.01', 'TCGA.D8.A1JB.01', 'TCGA.A2.A0T5.01', 'TCGA.A2.A0YM.01', 'TCGA.3C.AALK.01', 'TCGA.BH.A0DP.01', 'TCGA.AR.A24Z.01', 'TCGA.BH.A6R8.01', 'TCGA.D8.A27W.01', 'TCGA.AQ.A04H.01', 'TCGA.D8.A1Y0.01', 'TCGA.EW.A1P5.01', 'TCGA.BH.A0H3.01', 'TCGA.BH.A0W5.01', 'TCGA.E2.A576.01', 'TCGA.GM.A3XL.01', 'TCGA.E9.A3X8.01', 'TCGA.E9.A248.01', 'TCGA.A7.A5ZX.01', 'TCGA.D8.A27H.01', 'TCGA.AO.A125.01', 'TCGA.AR.A2LE.01', 'TCGA.GM.A3NW.01', 'TCGA.A2.A25F.01', 'TCGA.BH.A1EV.01', 'TCGA.BH.A1FU.01', 'TCGA.D8.A27T.01', 'TCGA.AO.A0JE.01', 'TCGA.OL.A5RV.01', 'TCGA.E9.A1NE.01', 'TCGA.AR.A24P.01', 'TCGA.PE.A5DC.01', 'TCGA.E2.A9RU.01', 'TCGA.A2.A0CK.01', 'TCGA.S3.AA10.01', 'TCGA.S3.A6ZG.01', 'TCGA.D8.A27G.01', 'TCGA.AO.A03N.01', 'TCGA.A2.A0T0.01', 'TCGA.OL.A5DA.01', 'TCGA.WT.AB41.01', 'TCGA.A2.A0T6.01', 'TCGA.BH.A0W3.01', 'TCGA.A7.A26G.01', 'TCGA.AN.A0XV.01', 'TCGA.AC.A2FG.01', 'TCGA.EW.A1PA.01', 'TCGA.LD.A9QF.01', 'TCGA.WT.AB44.01', 'TCGA.EW.A2FR.01', 'TCGA.C8.A1HG.01', 'TCGA.D8.A1J9.01', 'TCGA.BH.A8G0.01', 'TCGA.D8.A27F.01', 'TCGA.GM.A2D9.01', 'TCGA.UL.AAZ6.01', 'TCGA.AR.A0U3.01', 'TCGA.D8.A1XB.01', 'TCGA.C8.A1HJ.01', 'TCGA.AR.A1AN.01', 'TCGA.C8.A27B.01', 'TCGA.AC.A23C.01', 'TCGA.GM.A2DH.01', 'TCGA.S3.AA15.01', 'TCGA.EW.A1OX.01', 'TCGA.BH.A203.01', 'TCGA.OL.A66J.01', 'TCGA.C8.A278.01', 'TCGA.AC.A3OD.01', 'TCGA.A2.A4S1.01', 'TCGA.A2.A0ST.01', 'TCGA.AC.A3YI.01', 'TCGA.GI.A2C8.01', 'TCGA.S3.A6ZH.01'
...
'TCGA.E9.A1RF.01', 'TCGA.E9.A22H.01', 'TCGA.LL.A740.01', 'TCGA.BH.A0BM.01', 'TCGA.E9.A1R5.01', 'TCGA.LD.A74U.01', 'TCGA.AR.A0TR.01', 'TCGA.D8.A1XA.01', 'TCGA.OL.A6VO.01', 'TCGA.A2.A0T7.01', 'TCGA.A2.A3Y0.01', 'TCGA.AO.A0JG.01', 'TCGA.AR.A0TP.01', 'TCGA.C8.A1HM.01', 'TCGA.A7.A5ZV.01', 'TCGA.A2.A25D.01', 'TCGA.E9.A22B.01', 'TCGA.E9.A1R6.01', 'TCGA.EW.A1IY.01', 'TCGA.BH.A0HP.01', 'TCGA.B6.A0RE.01', 'TCGA.E9.A295.01', 'TCGA.A2.A4S2.01', 'TCGA.E2.A15K.01', 'TCGA.LL.A73Y.01', 'TCGA.C8.A26X.01', 'TCGA.BH.A0DH.01', 'TCGA.E2.A1LI.01', 'TCGA.A7.A2KD.01', 'TCGA.OL.A6VQ.01', 'TCGA.A2.A0YC.01', 'TCGA.A1.A0SG.01', 'TCGA.AC.A2FK.01', 'TCGA.C8.A1HI.01', 'TCGA.BH.A0DS.01', 'TCGA.XX.A89A.01', 'TCGA.GM.A4E0.01', 'TCGA.E9.A6HE.01', 'TCGA.E9.A1R4.01', 'TCGA.PE.A5DE.01', 'TCGA.AR.A24N.01', 'TCGA.OL.A97C.01', 'TCGA.A1.A0SQ.01', 'TCGA.E9.A24A.01', 'TCGA.E2.A1IK.01', 'TCGA.AQ.A7U7.01', 'TCGA.OL.A66I.01', 'TCGA.BH.A0H9.01', 'TCGA.BH.A209.01', 'TCGA.B6.A0RL.01', 'TCGA.E2.A1IO.01', 'TCGA.BH.A0H0.01', 'TCGA.AR.A1AS.01', 'TCGA.LL.A5YL.01', 'TCGA.BH.A0BZ.01', 'TCGA.B6.A401.01', 'TCGA.D8.A1XW.01', 'TCGA.AO.A03M.01', 'TCGA.E9.A1R7.01', 'TCGA.EW.A1J1.01', 'TCGA.LL.A5YM.01', 'TCGA.D8.A27I.01', 'TCGA.A2.A0YT.01', 'TCGA.C8.A8HQ.01', 'TCGA.A7.A3RF.01', 'TCGA.AC.A8OQ.01', 'TCGA.D8.A3Z6.01', 'TCGA.EW.A2FV.01', 'TCGA.D8.A1JU.01', 'TCGA.A2.A25E.01', 'TCGA.E9.A243.01', 'TCGA.A1.A0SJ.01', 'TCGA.B6.A409.01', 'TCGA.D8.A1JS.01', 'TCGA.A2.A3XW.01', 'TCGA.E9.A245.01', 'TCGA.E9.A1ND.01', 'TCGA.E2.A10C.01', 'TCGA.AR.A1AP.01'}).

This happened while the csv dataset builder was generating data using

hf://datasets/AIBIC/MLOmics/Main_Dataset/Classification_datasets/GS-BRCA/Aligned/BRCA_label_num.csv (at revision d7c2239504dcf817ee9f33a693f9617d614eef67)

Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback:    Traceback (most recent call last):
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1871, in _prepare_split_single
                  writer.write_table(table)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/arrow_writer.py", line 643, in write_table
                  pa_table = table_cast(pa_table, self._schema)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2293, in table_cast
                  return cast_table_to_schema(table, schema)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2241, in cast_table_to_schema
                  raise CastError(
              datasets.table.CastError: Couldn't cast
              Label: int64
              -- schema metadata --
              pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 368
              to
              {'Unnamed: 0': Value(dtype='string', id=None), 'TCGA.3C.AAAU.01': Value(dtype='float64', id=None), 'TCGA.3C.AALI.01': Value(dtype='float64', id=None), 'TCGA.3C.AALJ.01': Value(dtype='float64', id=None), 'TCGA.3C.AALK.01': Value(dtype='float64', id=None), 'TCGA.5L.AAT0.01': Value(dtype='float64', id=None), 'TCGA.5T.A9QA.01': Value(dtype='float64', id=None), 'TCGA.A1.A0SB.01': Value(dtype='float64', id=None), 'TCGA.A1.A0SE.01': Value(dtype='float64', id=None), 'TCGA.A1.A0SF.01': Value(dtype='float64', id=None), 'TCGA.A1.A0SG.01': Value(dtype='float64', id=None), 'TCGA.A1.A0SH.01': Value(dtype='float64', id=None), 'TCGA.A1.A0SI.01': Value(dtype='float64', id=None), 'TCGA.A1.A0SJ.01': Value(dtype='float64', id=None), 'TCGA.A1.A0SK.01': Value(dtype='float64', id=None), 'TCGA.A1.A0SO.01': Value(dtype='float64', id=None), 'TCGA.A1.A0SP.01': Value(dtype='float64', id=None), 'TCGA.A1.A0SQ.01': Value(dtype='float64', id=None), 'TCGA.A2.A04R.01': Value(dtype='float64', id=None), 'TCGA.A2.A0CK.01': Value(dtype='float64', id=None), 'TCGA.A2.A0CR.01': Value(dtype='float64', id=None), 'TCGA.A2.A0CT.01': Value(dtype='float64', id=None), 'TCGA.A2.A0EN.01': Value(dtype='float64', id=None), 'TCGA.A2.A0EP.01': Value(dtype='float64', id=None), 'TCGA.A2.A0EU.01': Value(dtype='float64', id=None), 'TCGA.A2.A0ST.01': Value(dtype='float64', id=None), 'TCGA.A2.A0SU.01': Value(dtype='float64', id=None), 'TCGA.A2.A0SV.01': Value(dtype='float64', id=None), 'TCGA.A2.A0SW.01': Value(dtype='float64', id=None
              ...
              L.A6VR.01': Value(dtype='float64', id=None), 'TCGA.OL.A97C.01': Value(dtype='float64', id=None), 'TCGA.PE.A5DC.01': Value(dtype='float64', id=None), 'TCGA.PE.A5DD.01': Value(dtype='float64', id=None), 'TCGA.PE.A5DE.01': Value(dtype='float64', id=None), 'TCGA.PL.A8LV.01': Value(dtype='float64', id=None), 'TCGA.PL.A8LX.01': Value(dtype='float64', id=None), 'TCGA.PL.A8LY.01': Value(dtype='float64', id=None), 'TCGA.PL.A8LZ.01': Value(dtype='float64', id=None), 'TCGA.S3.A6ZF.01': Value(dtype='float64', id=None), 'TCGA.S3.A6ZG.01': Value(dtype='float64', id=None), 'TCGA.S3.A6ZH.01': Value(dtype='float64', id=None), 'TCGA.S3.AA0Z.01': Value(dtype='float64', id=None), 'TCGA.S3.AA10.01': Value(dtype='float64', id=None), 'TCGA.S3.AA11.01': Value(dtype='float64', id=None), 'TCGA.S3.AA12.01': Value(dtype='float64', id=None), 'TCGA.S3.AA14.01': Value(dtype='float64', id=None), 'TCGA.S3.AA15.01': Value(dtype='float64', id=None), 'TCGA.S3.AA17.01': Value(dtype='float64', id=None), 'TCGA.UL.AAZ6.01': Value(dtype='float64', id=None), 'TCGA.UU.A93S.01': Value(dtype='float64', id=None), 'TCGA.V7.A7HQ.01': Value(dtype='float64', id=None), 'TCGA.W8.A86G.01': Value(dtype='float64', id=None), 'TCGA.WT.AB41.01': Value(dtype='float64', id=None), 'TCGA.WT.AB44.01': Value(dtype='float64', id=None), 'TCGA.XX.A899.01': Value(dtype='float64', id=None), 'TCGA.XX.A89A.01': Value(dtype='float64', id=None), 'TCGA.Z7.A8R5.01': Value(dtype='float64', id=None), 'TCGA.Z7.A8R6.01': Value(dtype='float64', id=None)}
              because column names don't match
              
              During handling of the above exception, another exception occurred:
              
              Traceback (most recent call last):
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1428, in compute_config_parquet_and_info_response
                  parquet_operations, partial, estimated_dataset_info = stream_convert_to_parquet(
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 989, in stream_convert_to_parquet
                  builder._prepare_split(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1742, in _prepare_split
                  for job_id, done, content in self._prepare_split_single(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1873, in _prepare_split_single
                  raise DatasetGenerationCastError.from_cast_error(
              datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
              
              All the data files must have the same columns, but at some point there are 1 new columns ({'Label'}) and 672 missing columns ({'TCGA.AR.A0U2.01', 'TCGA.E9.A1RB.01', 'TCGA.D8.A1X8.01', 'TCGA.PL.A8LZ.01', 'TCGA.E2.A1BC.01', 'TCGA.E9.A1N3.01', 'TCGA.D8.A1JB.01', 'TCGA.A2.A0T5.01', 'TCGA.A2.A0YM.01', 'TCGA.3C.AALK.01', 'TCGA.BH.A0DP.01', 'TCGA.AR.A24Z.01', 'TCGA.BH.A6R8.01', 'TCGA.D8.A27W.01', 'TCGA.AQ.A04H.01', 'TCGA.D8.A1Y0.01', 'TCGA.EW.A1P5.01', 'TCGA.BH.A0H3.01', 'TCGA.BH.A0W5.01', 'TCGA.E2.A576.01', 'TCGA.GM.A3XL.01', 'TCGA.E9.A3X8.01', 'TCGA.E9.A248.01', 'TCGA.A7.A5ZX.01', 'TCGA.D8.A27H.01', 'TCGA.AO.A125.01', 'TCGA.AR.A2LE.01', 'TCGA.GM.A3NW.01', 'TCGA.A2.A25F.01', 'TCGA.BH.A1EV.01', 'TCGA.BH.A1FU.01', 'TCGA.D8.A27T.01', 'TCGA.AO.A0JE.01', 'TCGA.OL.A5RV.01', 'TCGA.E9.A1NE.01', 'TCGA.AR.A24P.01', 'TCGA.PE.A5DC.01', 'TCGA.E2.A9RU.01', 'TCGA.A2.A0CK.01', 'TCGA.S3.AA10.01', 'TCGA.S3.A6ZG.01', 'TCGA.D8.A27G.01', 'TCGA.AO.A03N.01', 'TCGA.A2.A0T0.01', 'TCGA.OL.A5DA.01', 'TCGA.WT.AB41.01', 'TCGA.A2.A0T6.01', 'TCGA.BH.A0W3.01', 'TCGA.A7.A26G.01', 'TCGA.AN.A0XV.01', 'TCGA.AC.A2FG.01', 'TCGA.EW.A1PA.01', 'TCGA.LD.A9QF.01', 'TCGA.WT.AB44.01', 'TCGA.EW.A2FR.01', 'TCGA.C8.A1HG.01', 'TCGA.D8.A1J9.01', 'TCGA.BH.A8G0.01', 'TCGA.D8.A27F.01', 'TCGA.GM.A2D9.01', 'TCGA.UL.AAZ6.01', 'TCGA.AR.A0U3.01', 'TCGA.D8.A1XB.01', 'TCGA.C8.A1HJ.01', 'TCGA.AR.A1AN.01', 'TCGA.C8.A27B.01', 'TCGA.AC.A23C.01', 'TCGA.GM.A2DH.01', 'TCGA.S3.AA15.01', 'TCGA.EW.A1OX.01', 'TCGA.BH.A203.01', 'TCGA.OL.A66J.01', 'TCGA.C8.A278.01', 'TCGA.AC.A3OD.01', 'TCGA.A2.A4S1.01', 'TCGA.A2.A0ST.01', 'TCGA.AC.A3YI.01', 'TCGA.GI.A2C8.01', 'TCGA.S3.A6ZH.01'
              ...
              'TCGA.E9.A1RF.01', 'TCGA.E9.A22H.01', 'TCGA.LL.A740.01', 'TCGA.BH.A0BM.01', 'TCGA.E9.A1R5.01', 'TCGA.LD.A74U.01', 'TCGA.AR.A0TR.01', 'TCGA.D8.A1XA.01', 'TCGA.OL.A6VO.01', 'TCGA.A2.A0T7.01', 'TCGA.A2.A3Y0.01', 'TCGA.AO.A0JG.01', 'TCGA.AR.A0TP.01', 'TCGA.C8.A1HM.01', 'TCGA.A7.A5ZV.01', 'TCGA.A2.A25D.01', 'TCGA.E9.A22B.01', 'TCGA.E9.A1R6.01', 'TCGA.EW.A1IY.01', 'TCGA.BH.A0HP.01', 'TCGA.B6.A0RE.01', 'TCGA.E9.A295.01', 'TCGA.A2.A4S2.01', 'TCGA.E2.A15K.01', 'TCGA.LL.A73Y.01', 'TCGA.C8.A26X.01', 'TCGA.BH.A0DH.01', 'TCGA.E2.A1LI.01', 'TCGA.A7.A2KD.01', 'TCGA.OL.A6VQ.01', 'TCGA.A2.A0YC.01', 'TCGA.A1.A0SG.01', 'TCGA.AC.A2FK.01', 'TCGA.C8.A1HI.01', 'TCGA.BH.A0DS.01', 'TCGA.XX.A89A.01', 'TCGA.GM.A4E0.01', 'TCGA.E9.A6HE.01', 'TCGA.E9.A1R4.01', 'TCGA.PE.A5DE.01', 'TCGA.AR.A24N.01', 'TCGA.OL.A97C.01', 'TCGA.A1.A0SQ.01', 'TCGA.E9.A24A.01', 'TCGA.E2.A1IK.01', 'TCGA.AQ.A7U7.01', 'TCGA.OL.A66I.01', 'TCGA.BH.A0H9.01', 'TCGA.BH.A209.01', 'TCGA.B6.A0RL.01', 'TCGA.E2.A1IO.01', 'TCGA.BH.A0H0.01', 'TCGA.AR.A1AS.01', 'TCGA.LL.A5YL.01', 'TCGA.BH.A0BZ.01', 'TCGA.B6.A401.01', 'TCGA.D8.A1XW.01', 'TCGA.AO.A03M.01', 'TCGA.E9.A1R7.01', 'TCGA.EW.A1J1.01', 'TCGA.LL.A5YM.01', 'TCGA.D8.A27I.01', 'TCGA.A2.A0YT.01', 'TCGA.C8.A8HQ.01', 'TCGA.A7.A3RF.01', 'TCGA.AC.A8OQ.01', 'TCGA.D8.A3Z6.01', 'TCGA.EW.A2FV.01', 'TCGA.D8.A1JU.01', 'TCGA.A2.A25E.01', 'TCGA.E9.A243.01', 'TCGA.A1.A0SJ.01', 'TCGA.B6.A409.01', 'TCGA.D8.A1JS.01', 'TCGA.A2.A3XW.01', 'TCGA.E9.A245.01', 'TCGA.E9.A1ND.01', 'TCGA.E2.A10C.01', 'TCGA.AR.A1AP.01'}).
              
              This happened while the csv dataset builder was generating data using
              
              hf://datasets/AIBIC/MLOmics/Main_Dataset/Classification_datasets/GS-BRCA/Aligned/BRCA_label_num.csv (at revision d7c2239504dcf817ee9f33a693f9617d614eef67)
              
              Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)