hdallatorre commited on
Commit
0d5e221
·
1 Parent(s): b77409a

feat: Version working both when streaming=True and streaming=False

Browse files
nucleotide_transformer_downstream_tasks_multilabel.py CHANGED
@@ -84,13 +84,16 @@ class NucleotideTransformerDownstreamTasks(datasets.GeneratorBasedBuilder):
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  DEFAULT_CONFIG_NAME = "deepstarr"
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  def _info(self):
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- features = datasets.Features(
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- {
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- "sequence": datasets.Value("string"),
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- "name": datasets.Value("string"),
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- "labels": datasets.Sequence("float32"),
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- }
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- )
 
 
 
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  return datasets.DatasetInfo(
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  # This is the description that will appear on the datasets page.
@@ -132,10 +135,15 @@ class NucleotideTransformerDownstreamTasks(datasets.GeneratorBasedBuilder):
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  sequence, name = str(record.seq), str(record.name)
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  labels = [float(label) for label in name.split("|")[1:]]
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- # yield example
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- yield key, {
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  "sequence": sequence,
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  "name": name,
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- "labels": labels,
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  }
 
 
 
 
 
 
 
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  key += 1
 
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  DEFAULT_CONFIG_NAME = "deepstarr"
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  def _info(self):
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+ features_dict = {
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+ "sequence": datasets.Value("string"),
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+ "name": datasets.Value("string"),
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+ }
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+ labels_dict = {
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+ f"label_{i}": datasets.Value(self.config.dtype)
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+ for i in range(self.config.num_labels)
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+ }
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+ features_dict.update(labels_dict)
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+ features = datasets.Features(features_dict)
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  return datasets.DatasetInfo(
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  # This is the description that will appear on the datasets page.
 
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  sequence, name = str(record.seq), str(record.name)
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  labels = [float(label) for label in name.split("|")[1:]]
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+ sequence_name_dict = {
 
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  "sequence": sequence,
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  "name": name,
 
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  }
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+
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+ labels_dict = {
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+ f"label_{i}": labels[i] for i in range(self.config.num_labels)
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+ }
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+ sequence_name_dict.update(labels_dict)
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+ # yield example
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+ yield key, sequence_name_dict
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  key += 1