Commit
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2bf638f
1
Parent(s):
53d9b55
feat: revert to working version
Browse files
nucleotide_transformer_downstream_tasks_multilabel.py
CHANGED
@@ -84,17 +84,13 @@ class NucleotideTransformerDownstreamTasks(datasets.GeneratorBasedBuilder):
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DEFAULT_CONFIG_NAME = "deepstarr"
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def _info(self):
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for i in range(self.config.num_labels)
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}
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features_dict.update(labels_dict)
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features = datasets.Features(features_dict)
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return datasets.DatasetInfo(
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# This is the description that will appear on the datasets page.
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@@ -136,16 +132,10 @@ class NucleotideTransformerDownstreamTasks(datasets.GeneratorBasedBuilder):
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sequence, name = str(record.seq), str(record.name)
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labels = [float(label) for label in name.split("|")[1:]]
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"sequence": sequence,
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"name": name,
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"labels": labels,
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}
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labels_dict = {
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f"label_{i}": labels[i] for i in range(self.config.num_labels)
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}
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sequence_name_dict.update(labels_dict)
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# yield example
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yield key, sequence_name_dict
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key += 1
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DEFAULT_CONFIG_NAME = "deepstarr"
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def _info(self):
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features = datasets.Features(
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{
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"sequence": datasets.Value("string"),
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"name": datasets.Value("string"),
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"labels": datasets.Sequence(self.config.dtype),
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}
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)
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return datasets.DatasetInfo(
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# This is the description that will appear on the datasets page.
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sequence, name = str(record.seq), str(record.name)
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labels = [float(label) for label in name.split("|")[1:]]
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# yield example
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yield key, {
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"sequence": sequence,
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"name": name,
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"labels": labels,
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}
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key += 1
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