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Datasets:
LucaGroup
/
LucaOne-Downstream-Task-Datasets

Tasks:
Text Classification
Modalities:
Text
Languages:
English
Tags:
LucaOne
Bioinformatics
Protein
Gene
RNA
DNA
License:
Dataset card Data Studio Files
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LucaGroup commited on
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Update README.md

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  1. README.md +165 -165
README.md CHANGED
@@ -7,179 +7,179 @@ configs:
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  - config_name: CentralDogma
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  data_files:
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- - split: train
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- path: dataset/CentralDogma/gene_protein/binary_class/train/train.csv
12
- - split: dev
13
- path: dataset/CentralDogma/gene_protein/binary_class/dev/dev.csv
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- - split: test
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- path: dataset/CentralDogma/gene_protein/binary_class/test/test.csv
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- - split: label
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- path: dataset/CentralDogma/gene_protein/binary_class/label.txt
18
-
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- - config_name: CentralDogmaCDSProtein
20
- data_files:
21
- - split: train
22
- path: dataset/CentralDogmaCDSProtein/gene_protein/binary_class/train/train.csv
23
- - split: dev
24
- path: dataset/CentralDogmaCDSProtein/gene_protein/binary_class/dev/dev.csv
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- - split: test
26
- path: dataset/CentralDogmaCDSProtein/gene_protein/binary_class/test/test.csv
27
- - split: label
28
- path: dataset/CentralDogmaCDSProtein/gene_protein/binary_class/label.txt
29
-
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- - config_name: CentralDogmaV2
31
- data_files:
32
- - split: train
33
- path: dataset/CentralDogmaV2/gene_protein/binary_class/train/train.csv
34
- - split: dev
35
- path: dataset/CentralDogmaV2/gene_protein/binary_class/dev/dev.csv
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- - split: test
37
  path: dataset/CentralDogmaV2/gene_protein/binary_class/test/test.csv
38
- - split: label
39
- path: dataset/CentralDogmaV2/gene_protein/binary_class/label.txt
40
-
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- - config_name: CrossSpeciesHomologousGenePairsV1
42
- data_files:
43
- - split: train
44
- path: dataset/CrossSpeciesHomologousGenePairsV1/gene_protein/binary_class/train/train.csv
45
- - split: dev
46
- path: dataset/CrossSpeciesHomologousGenePairsV1/gene_protein/binary_class/dev/dev.csv
47
- - split: test
48
- path: dataset/CrossSpeciesHomologousGenePairsV1/gene_protein/binary_class/test/test.csv
49
- - split: label_info
50
- dataset/CrossSpeciesHomologousGenePairsV1/gene_protein/binary_class/label.txt
51
-
52
- - config_name: CrossSpeciesHomologousGenePairsV2
53
- data_files:
54
- - split: train
55
- path: dataset/CrossSpeciesHomologousGenePairsV2/gene_protein/binary_class/train/train.csv
56
- - split: dev
57
- path: dataset/CrossSpeciesHomologousGenePairsV2/gene_protein/binary_class/dev/dev.csv
58
- - split: test
59
- path: dataset/CrossSpeciesHomologousGenePairsV2/gene_protein/binary_class/test/test.csv
60
- - split: label_info
61
- dataset/CrossSpeciesHomologousGenePairsV2/gene_protein/binary_class/label.txt
62
-
63
- - config_name: GenusTax
64
- data_files:
65
- - split: train
66
- path: dataset/GenusTax/gene/multi_class/train/train.csv
67
- - split: dev
68
- path: dataset/GenusTax/gene/multi_class/dev/dev.csv
69
- - split: test
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- path: dataset/GenusTax/gene/multi_class/test/test.csv
71
- - split: label_info
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- dataset/GenusTax/gene/multi_class/label.txt
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-
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- - config_name: InfA
75
- data_files:
76
- - split: train
77
- path: dataset/InfA/gene_gene/binary_class/train/train.csv
78
- - split: dev
79
  path: dataset/InfA/gene_gene/binary_class/dev/dev.csv
80
- - split: test
81
- path: dataset/InfA/gene_gene/binary_class/test/test.csv
82
- - split: label_info
83
- dataset/InfA/gene_gene/binary_class/label.txt
84
-
85
- - config_name: ncRNAFam
86
- data_files:
87
- - split: train
88
- path: dataset/ncRNAFam/gene/multi_class/train/train.csv
89
- - split: dev
90
- path: dataset/ncRNAFam/gene/multi_class/dev/dev.csv
91
- - split: test
92
- path: dataset/ncRNAFam/gene/multi_class/test/test.csv
93
- - split: label_info
94
- dataset/ncRNAFam/gene/multi_class/label.txt
95
-
96
- - config_name: ncRPI
97
- data_files:
98
- - split: train
99
- path: dataset/ncRPI/gene_protein/binary_class/train/train.csv
100
- - split: dev
101
- path: dataset/ncRPI/gene_protein/binary_class/dev/dev.csv
102
- - split: test
103
- path: dataset/ncRPI/gene_protein/binary_class/test/test.csv
104
- - split: label_info
105
- dataset/ncRPI/gene_protein/binary_class/label.txt
106
 
107
  - config_name: PPI
108
- data_files:
109
- - split: train
110
- path: dataset/PPI/protein/binary_class/train/train.csv
111
- - split: dev
112
- path: dataset/PPI/protein/binary_class/dev/dev.csv
113
- - split: test
114
- path: dataset/PPI/protein/binary_class/test/test.csv
115
- - split: label_info
116
- dataset/PPI/protein/binary_class/label.txt
117
-
118
- - config_name: ProtLoc
119
- data_files:
120
- - split: train
121
- path: dataset/ProtLoc/protein/multi_class/train/train.csv
122
- - split: dev
123
- path: dataset/ProtLoc/protein/multi_class/dev/dev.csv
124
- - split: test
125
- path: dataset/ProtLoc/protein/multi_class/test/test.csv
126
- - split: label_info
127
- dataset/ProtLoc/protein/multi_class/label.txt
128
-
129
- - config_name: ProtLocCDSGene
130
- data_files:
131
- - split: train
132
- path: dataset/ProtLocCDSGene/gene/multi_class/train/train.csv
133
- - split: dev
134
- path: dataset/ProtLocCDSGene/gene/multi_class/dev/dev.csv
135
- - split: test
136
- path: dataset/ProtLocCDSGene/gene/multi_class/test/test.csv
137
- - split: label_info
138
- dataset/ProtLocCDSGene/gene/multi_class/label.txt
139
 
140
- - config_name: ProtLocCDSProt
141
- data_files:
142
- - split: train
143
- path: dataset/ProtLocCDSProt/protein/multi_class/train/train.csv
144
- - split: dev
145
- path: dataset/ProtLocCDSProt/protein/multi_class/dev/dev.csv
146
- - split: test
147
- path: dataset/ProtLocCDSProt/protein/multi_class/test/test.csv
148
- - split: label_info
149
- dataset/ProtLocCDSProt/protein/multi_class/label.txt
150
-
151
- - config_name: ProtStab
152
- data_files:
153
- - split: train
154
- path: dataset/ProtStab/protein/regression/train/train.csv
155
- - split: dev
156
- path: dataset/ProtStab/protein/regression/dev/dev.csv
157
- - split: test
158
- path: dataset/ProtStab/protein/regression/test/test.csv
159
- - split: label_info
160
- dataset/ProtStab/protein/regression/label.txt
161
 
162
  - config_name: SpeciesTax
163
  data_files:
164
- - split: train
165
- path: dataset/SpeciesTax/gene/multi_class/train/train.csv
166
- - split: dev
167
- path: dataset/SpeciesTax/gene/multi_class/dev/dev.csv
168
- - split: test
169
- path: dataset/SpeciesTax/gene/multi_class/test/test.csv
170
- - split: label_info
171
- dataset/SpeciesTax/gene/multi_class/label.txt
172
-
173
- - config_name: SupKTax
174
- data_files:
175
- - split: train
176
- path: dataset/SupKTax/gene/multi_class/train/train.csv
177
- - split: dev
178
- path: dataset/SupKTax/gene/multi_class/dev/dev.csv
179
- - split: test
180
- path: dataset/SupKTax/gene/multi_class/test/test.csv
181
- - split: label_info
182
- dataset/SupKTax/gene/multi_class/label.txt
183
 
184
  ---
185
 
 
7
 
8
  - config_name: CentralDogma
9
  data_files:
10
+ - split: train
11
+ path: dataset/CentralDogma/gene_protein/binary_class/train/train.csv
12
+ - split: dev
13
+ path: dataset/CentralDogma/gene_protein/binary_class/dev/dev.csv
14
+ - split: test
15
+ path: dataset/CentralDogma/gene_protein/binary_class/test/test.csv
16
+ - split: label
17
+ path: dataset/CentralDogma/gene_protein/binary_class/label.txt
18
+
19
+ - config_name: CentralDogmaCDSProtein
20
+ data_files:
21
+ - split: train
22
+ path: dataset/CentralDogmaCDSProtein/gene_protein/binary_class/train/train.csv
23
+ - split: dev
24
+ path: dataset/CentralDogmaCDSProtein/gene_protein/binary_class/dev/dev.csv
25
+ - split: test
26
+ path: dataset/CentralDogmaCDSProtein/gene_protein/binary_class/test/test.csv
27
+ - split: label
28
+ path: dataset/CentralDogmaCDSProtein/gene_protein/binary_class/label.txt
29
+
30
+ - config_name: CentralDogmaV2
31
+ data_files:
32
+ - split: train
33
+ path: dataset/CentralDogmaV2/gene_protein/binary_class/train/train.csv
34
+ - split: dev
35
+ path: dataset/CentralDogmaV2/gene_protein/binary_class/dev/dev.csv
36
+ - split: test
37
  path: dataset/CentralDogmaV2/gene_protein/binary_class/test/test.csv
38
+ - split: label
39
+ path: dataset/CentralDogmaV2/gene_protein/binary_class/label.txt
40
+
41
+ - config_name: CrossSpeciesHomologousGenePairsV1
42
+ data_files:
43
+ - split: train
44
+ path: dataset/CrossSpeciesHomologousGenePairsV1/gene_protein/binary_class/train/train.csv
45
+ - split: dev
46
+ path: dataset/CrossSpeciesHomologousGenePairsV1/gene_protein/binary_class/dev/dev.csv
47
+ - split: test
48
+ path: dataset/CrossSpeciesHomologousGenePairsV1/gene_protein/binary_class/test/test.csv
49
+ - split: label
50
+ dataset/CrossSpeciesHomologousGenePairsV1/gene_protein/binary_class/label.txt
51
+
52
+ - config_name: CrossSpeciesHomologousGenePairsV2
53
+ data_files:
54
+ - split: train
55
+ path: dataset/CrossSpeciesHomologousGenePairsV2/gene_protein/binary_class/train/train.csv
56
+ - split: dev
57
+ path: dataset/CrossSpeciesHomologousGenePairsV2/gene_protein/binary_class/dev/dev.csv
58
+ - split: test
59
+ path: dataset/CrossSpeciesHomologousGenePairsV2/gene_protein/binary_class/test/test.csv
60
+ - split: label
61
+ path: dataset/CrossSpeciesHomologousGenePairsV2/gene_protein/binary_class/label.txt
62
+
63
+ - config_name: GenusTax
64
+ data_files:
65
+ - split: train
66
+ path: dataset/GenusTax/gene/multi_class/train/train.csv
67
+ - split: dev
68
+ path: dataset/GenusTax/gene/multi_class/dev/dev.csv
69
+ - split: test
70
+ path: dataset/GenusTax/gene/multi_class/test/test.csv
71
+ - split: label
72
+ path: dataset/GenusTax/gene/multi_class/label.txt
73
+
74
+ - config_name: InfA
75
+ data_files:
76
+ - split: train
77
+ path: dataset/InfA/gene_gene/binary_class/train/train.csv
78
+ - split: dev
79
  path: dataset/InfA/gene_gene/binary_class/dev/dev.csv
80
+ - split: test
81
+ path: dataset/InfA/gene_gene/binary_class/test/test.csv
82
+ - split: label
83
+ path: dataset/InfA/gene_gene/binary_class/label.txt
84
+
85
+ - config_name: ncRNAFam
86
+ data_files:
87
+ - split: train
88
+ path: dataset/ncRNAFam/gene/multi_class/train/train.csv
89
+ - split: dev
90
+ path: dataset/ncRNAFam/gene/multi_class/dev/dev.csv
91
+ - split: test
92
+ path: dataset/ncRNAFam/gene/multi_class/test/test.csv
93
+ - split: label
94
+ path: dataset/ncRNAFam/gene/multi_class/label.txt
95
+
96
+ - config_name: ncRPI
97
+ data_files:
98
+ - split: train
99
+ path: dataset/ncRPI/gene_protein/binary_class/train/train.csv
100
+ - split: dev
101
+ path: dataset/ncRPI/gene_protein/binary_class/dev/dev.csv
102
+ - split: test
103
+ path: dataset/ncRPI/gene_protein/binary_class/test/test.csv
104
+ - split: label
105
+ path: dataset/ncRPI/gene_protein/binary_class/label.txt
106
 
107
  - config_name: PPI
108
+ data_files:
109
+ - split: train
110
+ path: dataset/PPI/protein/binary_class/train/train.csv
111
+ - split: dev
112
+ path: dataset/PPI/protein/binary_class/dev/dev.csv
113
+ - split: test
114
+ path: dataset/PPI/protein/binary_class/test/test.csv
115
+ - split: label
116
+ path: dataset/PPI/protein/binary_class/label.txt
117
+
118
+ - config_name: ProtLoc
119
+ data_files:
120
+ - split: train
121
+ path: dataset/ProtLoc/protein/multi_class/train/train.csv
122
+ - split: dev
123
+ path: dataset/ProtLoc/protein/multi_class/dev/dev.csv
124
+ - split: test
125
+ path: dataset/ProtLoc/protein/multi_class/test/test.csv
126
+ - split: label_info
127
+ dataset/ProtLoc/protein/multi_class/label.txt
128
+
129
+ - config_name: ProtLocCDSGene
130
+ data_files:
131
+ - split: train
132
+ path: dataset/ProtLocCDSGene/gene/multi_class/train/train.csv
133
+ - split: dev
134
+ path: dataset/ProtLocCDSGene/gene/multi_class/dev/dev.csv
135
+ - split: test
136
+ path: dataset/ProtLocCDSGene/gene/multi_class/test/test.csv
137
+ - split: label
138
+ path: dataset/ProtLocCDSGene/gene/multi_class/label.txt
139
 
140
+ - config_name: ProtLocCDSProt
141
+ data_files:
142
+ - split: train
143
+ path: dataset/ProtLocCDSProt/protein/multi_class/train/train.csv
144
+ - split: dev
145
+ path: dataset/ProtLocCDSProt/protein/multi_class/dev/dev.csv
146
+ - split: test
147
+ path: dataset/ProtLocCDSProt/protein/multi_class/test/test.csv
148
+ - split: label
149
+ path: dataset/ProtLocCDSProt/protein/multi_class/label.txt
150
+
151
+ - config_name: ProtStab
152
+ data_files:
153
+ - split: train
154
+ path: dataset/ProtStab/protein/regression/train/train.csv
155
+ - split: dev
156
+ path: dataset/ProtStab/protein/regression/dev/dev.csv
157
+ - split: test
158
+ path: dataset/ProtStab/protein/regression/test/test.csv
159
+ - split: label
160
+ path: dataset/ProtStab/protein/regression/label.txt
161
 
162
  - config_name: SpeciesTax
163
  data_files:
164
+ - split: train
165
+ path: dataset/SpeciesTax/gene/multi_class/train/train.csv
166
+ - split: dev
167
+ path: dataset/SpeciesTax/gene/multi_class/dev/dev.csv
168
+ - split: test
169
+ path: dataset/SpeciesTax/gene/multi_class/test/test.csv
170
+ - split: label
171
+ path: dataset/SpeciesTax/gene/multi_class/label.txt
172
+
173
+ - config_name: SupKTax
174
+ data_files:
175
+ - split: train
176
+ path: dataset/SupKTax/gene/multi_class/train/train.csv
177
+ - split: dev
178
+ path: dataset/SupKTax/gene/multi_class/dev/dev.csv
179
+ - split: test
180
+ path: dataset/SupKTax/gene/multi_class/test/test.csv
181
+ - split: label
182
+ path: dataset/SupKTax/gene/multi_class/label.txt
183
 
184
  ---
185