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@@ -5,7 +5,7 @@ This directory includes all the downstream task datasets of the LucaOne paper (h
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  ---
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  configs:
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- - config_name: CentralDogma
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  data_files:
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  - split: train
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  path: dataset/CentralDogma/gene_protein/binary_class/train/train.csv
@@ -16,7 +16,7 @@ configs:
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  - split: label_info
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  dataset/CentralDogma/gene_protein/binary_class/label.txt
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- - config_name: CentralDogmaCDSProtein
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  data_files:
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  - split: train
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  path: dataset/CentralDogmaCDSProtein/gene_protein/binary_class/train/train.csv
@@ -27,7 +27,7 @@ configs:
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  - split: label_info
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  dataset/CentralDogmaCDSProtein/gene_protein/binary_class/label.txt
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- - config_name: CentralDogmaV2
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  data_files:
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  - split: train
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  path: dataset/CentralDogmaV2/gene_protein/binary_class/train/train.csv
@@ -38,7 +38,7 @@ configs:
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  - split: label_info
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  dataset/CentralDogmaV2/gene_protein/binary_class/label.txt
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- - config_name: CrossSpeciesHomologousGenePairsV1
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  data_files:
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  - split: train
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  path: dataset/CrossSpeciesHomologousGenePairsV1/gene_protein/binary_class/train/train.csv
@@ -49,7 +49,7 @@ configs:
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  - split: label_info
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  dataset/CrossSpeciesHomologousGenePairsV1/gene_protein/binary_class/label.txt
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- - config_name: CrossSpeciesHomologousGenePairsV2
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  data_files:
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  - split: train
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  path: dataset/CrossSpeciesHomologousGenePairsV2/gene_protein/binary_class/train/train.csv
@@ -60,7 +60,7 @@ configs:
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  - split: label_info
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  dataset/CrossSpeciesHomologousGenePairsV2/gene_protein/binary_class/label.txt
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- - config_name: GenusTax
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  data_files:
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  - split: train
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  path: dataset/GenusTax/gene/multi_class/train/train.csv
@@ -71,7 +71,7 @@ configs:
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  - split: label_info
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  dataset/GenusTax/gene/multi_class/label.txt
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- - config_name: InfA
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  data_files:
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  - split: train
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  path: dataset/InfA/gene_gene/binary_class/train/train.csv
@@ -82,8 +82,8 @@ configs:
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  - split: label_info
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  dataset/InfA/gene_gene/binary_class/label.txt
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- - config_name: ncRNAFam
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- data_files:
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  - split: train
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  path: dataset/ncRNAFam/gene/multi_class/train/train.csv
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  - split: dev
@@ -93,7 +93,7 @@ configs:
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  - split: label_info
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  dataset/ncRNAFam/gene/multi_class/label.txt
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- - config_name: ncRPI
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  data_files:
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  - split: train
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  path: dataset/ncRPI/gene_protein/binary_class/train/train.csv
@@ -104,7 +104,7 @@ configs:
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  - split: label_info
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  dataset/ncRPI/gene_protein/binary_class/label.txt
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- - config_name: PPI
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  data_files:
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  - split: train
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  path: dataset/PPI/protein/binary_class/train/train.csv
@@ -126,7 +126,7 @@ configs:
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  - split: label_info
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  dataset/ProtLoc/protein/multi_class/label.txt
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- - config_name: ProtLocCDSGene
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  data_files:
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  - split: train
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  path: dataset/ProtLocCDSGene/gene/multi_class/train/train.csv
@@ -136,8 +136,8 @@ configs:
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  path: dataset/ProtLocCDSGene/gene/multi_class/test/test.csv
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  - split: label_info
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  dataset/ProtLocCDSGene/gene/multi_class/label.txt
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-
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- - config_name: ProtLocCDSProt
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  data_files:
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  - split: train
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  path: dataset/ProtLocCDSProt/protein/multi_class/train/train.csv
@@ -148,7 +148,7 @@ configs:
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  - split: label_info
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  dataset/ProtLocCDSProt/protein/multi_class/label.txt
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- - config_name: ProtStab
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  data_files:
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  - split: train
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  path: dataset/ProtStab/protein/regression/train/train.csv
@@ -159,7 +159,7 @@ configs:
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  - split: label_info
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  dataset/ProtStab/protein/regression/label.txt
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- - config_name: SpeciesTax
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  data_files:
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  - split: train
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  path: dataset/SpeciesTax/gene/multi_class/train/train.csv
@@ -170,7 +170,7 @@ configs:
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  - split: label_info
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  dataset/SpeciesTax/gene/multi_class/label.txt
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- - config_name: SupKTax
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  data_files:
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  - split: train
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  path: dataset/SupKTax/gene/multi_class/train/train.csv
 
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  ---
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  configs:
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+ - config_name: CentralDogma
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  data_files:
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  - split: train
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  path: dataset/CentralDogma/gene_protein/binary_class/train/train.csv
 
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  - split: label_info
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  dataset/CentralDogma/gene_protein/binary_class/label.txt
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+ - config_name: CentralDogmaCDSProtein
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  data_files:
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  - split: train
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  path: dataset/CentralDogmaCDSProtein/gene_protein/binary_class/train/train.csv
 
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  - split: label_info
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  dataset/CentralDogmaCDSProtein/gene_protein/binary_class/label.txt
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+ - config_name: CentralDogmaV2
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  data_files:
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  - split: train
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  path: dataset/CentralDogmaV2/gene_protein/binary_class/train/train.csv
 
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  - split: label_info
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  dataset/CentralDogmaV2/gene_protein/binary_class/label.txt
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+ - config_name: CrossSpeciesHomologousGenePairsV1
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  data_files:
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  - split: train
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  path: dataset/CrossSpeciesHomologousGenePairsV1/gene_protein/binary_class/train/train.csv
 
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  - split: label_info
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  dataset/CrossSpeciesHomologousGenePairsV1/gene_protein/binary_class/label.txt
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+ - config_name: CrossSpeciesHomologousGenePairsV2
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  data_files:
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  - split: train
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  path: dataset/CrossSpeciesHomologousGenePairsV2/gene_protein/binary_class/train/train.csv
 
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  - split: label_info
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  dataset/CrossSpeciesHomologousGenePairsV2/gene_protein/binary_class/label.txt
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+ - config_name: GenusTax
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  data_files:
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  - split: train
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  path: dataset/GenusTax/gene/multi_class/train/train.csv
 
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  - split: label_info
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  dataset/GenusTax/gene/multi_class/label.txt
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+ - config_name: InfA
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  data_files:
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  - split: train
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  path: dataset/InfA/gene_gene/binary_class/train/train.csv
 
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  - split: label_info
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  dataset/InfA/gene_gene/binary_class/label.txt
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+ - config_name: ncRNAFam
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+ data_files:
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  - split: train
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  path: dataset/ncRNAFam/gene/multi_class/train/train.csv
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  - split: dev
 
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  - split: label_info
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  dataset/ncRNAFam/gene/multi_class/label.txt
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+ - config_name: ncRPI
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  data_files:
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  - split: train
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  path: dataset/ncRPI/gene_protein/binary_class/train/train.csv
 
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  - split: label_info
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  dataset/ncRPI/gene_protein/binary_class/label.txt
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+ - config_name: PPI
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  data_files:
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  - split: train
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  path: dataset/PPI/protein/binary_class/train/train.csv
 
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  - split: label_info
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  dataset/ProtLoc/protein/multi_class/label.txt
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+ - config_name: ProtLocCDSGene
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  data_files:
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  - split: train
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  path: dataset/ProtLocCDSGene/gene/multi_class/train/train.csv
 
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  path: dataset/ProtLocCDSGene/gene/multi_class/test/test.csv
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  - split: label_info
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  dataset/ProtLocCDSGene/gene/multi_class/label.txt
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+
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+ - config_name: ProtLocCDSProt
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  data_files:
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  - split: train
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  path: dataset/ProtLocCDSProt/protein/multi_class/train/train.csv
 
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  - split: label_info
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  dataset/ProtLocCDSProt/protein/multi_class/label.txt
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+ - config_name: ProtStab
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  data_files:
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  - split: train
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  path: dataset/ProtStab/protein/regression/train/train.csv
 
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  - split: label_info
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  dataset/ProtStab/protein/regression/label.txt
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+ - config_name: SpeciesTax
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  data_files:
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  - split: train
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  path: dataset/SpeciesTax/gene/multi_class/train/train.csv
 
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  - split: label_info
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  dataset/SpeciesTax/gene/multi_class/label.txt
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+ - config_name: SupKTax
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  data_files:
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  - split: train
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  path: dataset/SupKTax/gene/multi_class/train/train.csv