File size: 30,870 Bytes
b4c75b4 |
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479 480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495 496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513 514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531 532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549 550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567 568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585 586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603 604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619 620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637 638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655 656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 |
# mypy: disable-error-code="attr-defined"
import numpy as np
import scipy._lib._elementwise_iterative_method as eim
from scipy._lib._util import _RichResult
_EERRORINCREASE = -1 # used in _differentiate
def _differentiate_iv(func, x, args, atol, rtol, maxiter, order, initial_step,
step_factor, step_direction, preserve_shape, callback):
# Input validation for `_differentiate`
if not callable(func):
raise ValueError('`func` must be callable.')
# x has more complex IV that is taken care of during initialization
x = np.asarray(x)
dtype = x.dtype if np.issubdtype(x.dtype, np.inexact) else np.float64
if not np.iterable(args):
args = (args,)
if atol is None:
atol = np.finfo(dtype).tiny
if rtol is None:
rtol = np.sqrt(np.finfo(dtype).eps)
message = 'Tolerances and step parameters must be non-negative scalars.'
tols = np.asarray([atol, rtol, initial_step, step_factor])
if (not np.issubdtype(tols.dtype, np.number)
or np.any(tols < 0)
or tols.shape != (4,)):
raise ValueError(message)
initial_step, step_factor = tols[2:].astype(dtype)
maxiter_int = int(maxiter)
if maxiter != maxiter_int or maxiter <= 0:
raise ValueError('`maxiter` must be a positive integer.')
order_int = int(order)
if order_int != order or order <= 0:
raise ValueError('`order` must be a positive integer.')
step_direction = np.sign(step_direction).astype(dtype)
x, step_direction = np.broadcast_arrays(x, step_direction)
x, step_direction = x[()], step_direction[()]
message = '`preserve_shape` must be True or False.'
if preserve_shape not in {True, False}:
raise ValueError(message)
if callback is not None and not callable(callback):
raise ValueError('`callback` must be callable.')
return (func, x, args, atol, rtol, maxiter_int, order_int, initial_step,
step_factor, step_direction, preserve_shape, callback)
def _differentiate(func, x, *, args=(), atol=None, rtol=None, maxiter=10,
order=8, initial_step=0.5, step_factor=2.0,
step_direction=0, preserve_shape=False, callback=None):
"""Evaluate the derivative of an elementwise scalar function numerically.
Parameters
----------
func : callable
The function whose derivative is desired. The signature must be::
func(x: ndarray, *fargs) -> ndarray
where each element of ``x`` is a finite real and ``fargs`` is a tuple,
which may contain an arbitrary number of arrays that are broadcastable
with `x`. ``func`` must be an elementwise function: each element
``func(x)[i]`` must equal ``func(x[i])`` for all indices ``i``.
x : array_like
Abscissae at which to evaluate the derivative.
args : tuple, optional
Additional positional arguments to be passed to `func`. Must be arrays
broadcastable with `x`. If the callable to be differentiated requires
arguments that are not broadcastable with `x`, wrap that callable with
`func`. See Examples.
atol, rtol : float, optional
Absolute and relative tolerances for the stopping condition: iteration
will stop when ``res.error < atol + rtol * abs(res.df)``. The default
`atol` is the smallest normal number of the appropriate dtype, and
the default `rtol` is the square root of the precision of the
appropriate dtype.
order : int, default: 8
The (positive integer) order of the finite difference formula to be
used. Odd integers will be rounded up to the next even integer.
initial_step : float, default: 0.5
The (absolute) initial step size for the finite difference derivative
approximation.
step_factor : float, default: 2.0
The factor by which the step size is *reduced* in each iteration; i.e.
the step size in iteration 1 is ``initial_step/step_factor``. If
``step_factor < 1``, subsequent steps will be greater than the initial
step; this may be useful if steps smaller than some threshold are
undesirable (e.g. due to subtractive cancellation error).
maxiter : int, default: 10
The maximum number of iterations of the algorithm to perform. See
notes.
step_direction : array_like
An array representing the direction of the finite difference steps (for
use when `x` lies near to the boundary of the domain of the function.)
Must be broadcastable with `x` and all `args`.
Where 0 (default), central differences are used; where negative (e.g.
-1), steps are non-positive; and where positive (e.g. 1), all steps are
non-negative.
preserve_shape : bool, default: False
In the following, "arguments of `func`" refers to the array ``x`` and
any arrays within ``fargs``. Let ``shape`` be the broadcasted shape
of `x` and all elements of `args` (which is conceptually
distinct from ``fargs`` passed into `f`).
- When ``preserve_shape=False`` (default), `f` must accept arguments
of *any* broadcastable shapes.
- When ``preserve_shape=True``, `f` must accept arguments of shape
``shape`` *or* ``shape + (n,)``, where ``(n,)`` is the number of
abscissae at which the function is being evaluated.
In either case, for each scalar element ``xi`` within `x`, the array
returned by `f` must include the scalar ``f(xi)`` at the same index.
Consequently, the shape of the output is always the shape of the input
``x``.
See Examples.
callback : callable, optional
An optional user-supplied function to be called before the first
iteration and after each iteration.
Called as ``callback(res)``, where ``res`` is a ``_RichResult``
similar to that returned by `_differentiate` (but containing the
current iterate's values of all variables). If `callback` raises a
``StopIteration``, the algorithm will terminate immediately and
`_differentiate` will return a result.
Returns
-------
res : _RichResult
An instance of `scipy._lib._util._RichResult` with the following
attributes. (The descriptions are written as though the values will be
scalars; however, if `func` returns an array, the outputs will be
arrays of the same shape.)
success : bool
``True`` when the algorithm terminated successfully (status ``0``).
status : int
An integer representing the exit status of the algorithm.
``0`` : The algorithm converged to the specified tolerances.
``-1`` : The error estimate increased, so iteration was terminated.
``-2`` : The maximum number of iterations was reached.
``-3`` : A non-finite value was encountered.
``-4`` : Iteration was terminated by `callback`.
``1`` : The algorithm is proceeding normally (in `callback` only).
df : float
The derivative of `func` at `x`, if the algorithm terminated
successfully.
error : float
An estimate of the error: the magnitude of the difference between
the current estimate of the derivative and the estimate in the
previous iteration.
nit : int
The number of iterations performed.
nfev : int
The number of points at which `func` was evaluated.
x : float
The value at which the derivative of `func` was evaluated
(after broadcasting with `args` and `step_direction`).
Notes
-----
The implementation was inspired by jacobi [1]_, numdifftools [2]_, and
DERIVEST [3]_, but the implementation follows the theory of Taylor series
more straightforwardly (and arguably naively so).
In the first iteration, the derivative is estimated using a finite
difference formula of order `order` with maximum step size `initial_step`.
Each subsequent iteration, the maximum step size is reduced by
`step_factor`, and the derivative is estimated again until a termination
condition is reached. The error estimate is the magnitude of the difference
between the current derivative approximation and that of the previous
iteration.
The stencils of the finite difference formulae are designed such that
abscissae are "nested": after `func` is evaluated at ``order + 1``
points in the first iteration, `func` is evaluated at only two new points
in each subsequent iteration; ``order - 1`` previously evaluated function
values required by the finite difference formula are reused, and two
function values (evaluations at the points furthest from `x`) are unused.
Step sizes are absolute. When the step size is small relative to the
magnitude of `x`, precision is lost; for example, if `x` is ``1e20``, the
default initial step size of ``0.5`` cannot be resolved. Accordingly,
consider using larger initial step sizes for large magnitudes of `x`.
The default tolerances are challenging to satisfy at points where the
true derivative is exactly zero. If the derivative may be exactly zero,
consider specifying an absolute tolerance (e.g. ``atol=1e-16``) to
improve convergence.
References
----------
[1]_ Hans Dembinski (@HDembinski). jacobi.
https://github.com/HDembinski/jacobi
[2]_ Per A. Brodtkorb and John D'Errico. numdifftools.
https://numdifftools.readthedocs.io/en/latest/
[3]_ John D'Errico. DERIVEST: Adaptive Robust Numerical Differentiation.
https://www.mathworks.com/matlabcentral/fileexchange/13490-adaptive-robust-numerical-differentiation
[4]_ Numerical Differentition. Wikipedia.
https://en.wikipedia.org/wiki/Numerical_differentiation
Examples
--------
Evaluate the derivative of ``np.exp`` at several points ``x``.
>>> import numpy as np
>>> from scipy.optimize._differentiate import _differentiate
>>> f = np.exp
>>> df = np.exp # true derivative
>>> x = np.linspace(1, 2, 5)
>>> res = _differentiate(f, x)
>>> res.df # approximation of the derivative
array([2.71828183, 3.49034296, 4.48168907, 5.75460268, 7.3890561 ])
>>> res.error # estimate of the error
array(
[7.12940817e-12, 9.16688947e-12, 1.17594823e-11, 1.50972568e-11, 1.93942640e-11]
)
>>> abs(res.df - df(x)) # true error
array(
[3.06421555e-14, 3.01980663e-14, 5.06261699e-14, 6.30606678e-14, 8.34887715e-14]
)
Show the convergence of the approximation as the step size is reduced.
Each iteration, the step size is reduced by `step_factor`, so for
sufficiently small initial step, each iteration reduces the error by a
factor of ``1/step_factor**order`` until finite precision arithmetic
inhibits further improvement.
>>> iter = list(range(1, 12)) # maximum iterations
>>> hfac = 2 # step size reduction per iteration
>>> hdir = [-1, 0, 1] # compare left-, central-, and right- steps
>>> order = 4 # order of differentiation formula
>>> x = 1
>>> ref = df(x)
>>> errors = [] # true error
>>> for i in iter:
... res = _differentiate(f, x, maxiter=i, step_factor=hfac,
... step_direction=hdir, order=order,
... atol=0, rtol=0) # prevent early termination
... errors.append(abs(res.df - ref))
>>> errors = np.array(errors)
>>> plt.semilogy(iter, errors[:, 0], label='left differences')
>>> plt.semilogy(iter, errors[:, 1], label='central differences')
>>> plt.semilogy(iter, errors[:, 2], label='right differences')
>>> plt.xlabel('iteration')
>>> plt.ylabel('error')
>>> plt.legend()
>>> plt.show()
>>> (errors[1, 1] / errors[0, 1], 1 / hfac**order)
(0.06215223140159822, 0.0625)
The implementation is vectorized over `x`, `step_direction`, and `args`.
The function is evaluated once before the first iteration to perform input
validation and standardization, and once per iteration thereafter.
>>> def f(x, p):
... print('here')
... f.nit += 1
... return x**p
>>> f.nit = 0
>>> def df(x, p):
... return p*x**(p-1)
>>> x = np.arange(1, 5)
>>> p = np.arange(1, 6).reshape((-1, 1))
>>> hdir = np.arange(-1, 2).reshape((-1, 1, 1))
>>> res = _differentiate(f, x, args=(p,), step_direction=hdir, maxiter=1)
>>> np.allclose(res.df, df(x, p))
True
>>> res.df.shape
(3, 5, 4)
>>> f.nit
2
By default, `preserve_shape` is False, and therefore the callable
`f` may be called with arrays of any broadcastable shapes.
For example:
>>> shapes = []
>>> def f(x, c):
... shape = np.broadcast_shapes(x.shape, c.shape)
... shapes.append(shape)
... return np.sin(c*x)
>>>
>>> c = [1, 5, 10, 20]
>>> res = _differentiate(f, 0, args=(c,))
>>> shapes
[(4,), (4, 8), (4, 2), (3, 2), (2, 2), (1, 2)]
To understand where these shapes are coming from - and to better
understand how `_differentiate` computes accurate results - note that
higher values of ``c`` correspond with higher frequency sinusoids.
The higher frequency sinusoids make the function's derivative change
faster, so more function evaluations are required to achieve the target
accuracy:
>>> res.nfev
array([11, 13, 15, 17])
The initial ``shape``, ``(4,)``, corresponds with evaluating the
function at a single abscissa and all four frequencies; this is used
for input validation and to determine the size and dtype of the arrays
that store results. The next shape corresponds with evaluating the
function at an initial grid of abscissae and all four frequencies.
Successive calls to the function evaluate the function at two more
abscissae, increasing the effective order of the approximation by two.
However, in later function evaluations, the function is evaluated at
fewer frequencies because the corresponding derivative has already
converged to the required tolerance. This saves function evaluations to
improve performance, but it requires the function to accept arguments of
any shape.
"Vector-valued" functions are unlikely to satisfy this requirement.
For example, consider
>>> def f(x):
... return [x, np.sin(3*x), x+np.sin(10*x), np.sin(20*x)*(x-1)**2]
This integrand is not compatible with `_differentiate` as written; for instance,
the shape of the output will not be the same as the shape of ``x``. Such a
function *could* be converted to a compatible form with the introduction of
additional parameters, but this would be inconvenient. In such cases,
a simpler solution would be to use `preserve_shape`.
>>> shapes = []
>>> def f(x):
... shapes.append(x.shape)
... x0, x1, x2, x3 = x
... return [x0, np.sin(3*x1), x2+np.sin(10*x2), np.sin(20*x3)*(x3-1)**2]
>>>
>>> x = np.zeros(4)
>>> res = _differentiate(f, x, preserve_shape=True)
>>> shapes
[(4,), (4, 8), (4, 2), (4, 2), (4, 2), (4, 2)]
Here, the shape of ``x`` is ``(4,)``. With ``preserve_shape=True``, the
function may be called with argument ``x`` of shape ``(4,)`` or ``(4, n)``,
and this is what we observe.
"""
# TODO (followup):
# - investigate behavior at saddle points
# - array initial_step / step_factor?
# - multivariate functions?
res = _differentiate_iv(func, x, args, atol, rtol, maxiter, order, initial_step,
step_factor, step_direction, preserve_shape, callback)
(func, x, args, atol, rtol, maxiter, order,
h0, fac, hdir, preserve_shape, callback) = res
# Initialization
# Since f(x) (no step) is not needed for central differences, it may be
# possible to eliminate this function evaluation. However, it's useful for
# input validation and standardization, and everything else is designed to
# reduce function calls, so let's keep it simple.
temp = eim._initialize(func, (x,), args, preserve_shape=preserve_shape)
func, xs, fs, args, shape, dtype = temp
x, f = xs[0], fs[0]
df = np.full_like(f, np.nan)
# Ideally we'd broadcast the shape of `hdir` in `_elementwise_algo_init`, but
# it's simpler to do it here than to generalize `_elementwise_algo_init` further.
# `hdir` and `x` are already broadcasted in `_differentiate_iv`, so we know
# that `hdir` can be broadcasted to the final shape.
hdir = np.broadcast_to(hdir, shape).flatten()
status = np.full_like(x, eim._EINPROGRESS, dtype=int) # in progress
nit, nfev = 0, 1 # one function evaluations performed above
# Boolean indices of left, central, right, and (all) one-sided steps
il = hdir < 0
ic = hdir == 0
ir = hdir > 0
io = il | ir
# Most of these attributes are reasonably obvious, but:
# - `fs` holds all the function values of all active `x`. The zeroth
# axis corresponds with active points `x`, the first axis corresponds
# with the different steps (in the order described in
# `_differentiate_weights`).
# - `terms` (which could probably use a better name) is half the `order`,
# which is always even.
work = _RichResult(x=x, df=df, fs=f[:, np.newaxis], error=np.nan, h=h0,
df_last=np.nan, error_last=np.nan, h0=h0, fac=fac,
atol=atol, rtol=rtol, nit=nit, nfev=nfev,
status=status, dtype=dtype, terms=(order+1)//2,
hdir=hdir, il=il, ic=ic, ir=ir, io=io)
# This is the correspondence between terms in the `work` object and the
# final result. In this case, the mapping is trivial. Note that `success`
# is prepended automatically.
res_work_pairs = [('status', 'status'), ('df', 'df'), ('error', 'error'),
('nit', 'nit'), ('nfev', 'nfev'), ('x', 'x')]
def pre_func_eval(work):
"""Determine the abscissae at which the function needs to be evaluated.
See `_differentiate_weights` for a description of the stencil (pattern
of the abscissae).
In the first iteration, there is only one stored function value in
`work.fs`, `f(x)`, so we need to evaluate at `order` new points. In
subsequent iterations, we evaluate at two new points. Note that
`work.x` is always flattened into a 1D array after broadcasting with
all `args`, so we add a new axis at the end and evaluate all point
in one call to the function.
For improvement:
- Consider measuring the step size actually taken, since `(x + h) - x`
is not identically equal to `h` with floating point arithmetic.
- Adjust the step size automatically if `x` is too big to resolve the
step.
- We could probably save some work if there are no central difference
steps or no one-sided steps.
"""
n = work.terms # half the order
h = work.h # step size
c = work.fac # step reduction factor
d = c**0.5 # square root of step reduction factor (one-sided stencil)
# Note - no need to be careful about dtypes until we allocate `x_eval`
if work.nit == 0:
hc = h / c**np.arange(n)
hc = np.concatenate((-hc[::-1], hc))
else:
hc = np.asarray([-h, h]) / c**(n-1)
if work.nit == 0:
hr = h / d**np.arange(2*n)
else:
hr = np.asarray([h, h/d]) / c**(n-1)
n_new = 2*n if work.nit == 0 else 2 # number of new abscissae
x_eval = np.zeros((len(work.hdir), n_new), dtype=work.dtype)
il, ic, ir = work.il, work.ic, work.ir
x_eval[ir] = work.x[ir, np.newaxis] + hr
x_eval[ic] = work.x[ic, np.newaxis] + hc
x_eval[il] = work.x[il, np.newaxis] - hr
return x_eval
def post_func_eval(x, f, work):
""" Estimate the derivative and error from the function evaluations
As in `pre_func_eval`: in the first iteration, there is only one stored
function value in `work.fs`, `f(x)`, so we need to add the `order` new
points. In subsequent iterations, we add two new points. The tricky
part is getting the order to match that of the weights, which is
described in `_differentiate_weights`.
For improvement:
- Change the order of the weights (and steps in `pre_func_eval`) to
simplify `work_fc` concatenation and eliminate `fc` concatenation.
- It would be simple to do one-step Richardson extrapolation with `df`
and `df_last` to increase the order of the estimate and/or improve
the error estimate.
- Process the function evaluations in a more numerically favorable
way. For instance, combining the pairs of central difference evals
into a second-order approximation and using Richardson extrapolation
to produce a higher order approximation seemed to retain accuracy up
to very high order.
- Alternatively, we could use `polyfit` like Jacobi. An advantage of
fitting polynomial to more points than necessary is improved noise
tolerance.
"""
n = work.terms
n_new = n if work.nit == 0 else 1
il, ic, io = work.il, work.ic, work.io
# Central difference
# `work_fc` is *all* the points at which the function has been evaluated
# `fc` is the points we're using *this iteration* to produce the estimate
work_fc = (f[ic, :n_new], work.fs[ic, :], f[ic, -n_new:])
work_fc = np.concatenate(work_fc, axis=-1)
if work.nit == 0:
fc = work_fc
else:
fc = (work_fc[:, :n], work_fc[:, n:n+1], work_fc[:, -n:])
fc = np.concatenate(fc, axis=-1)
# One-sided difference
work_fo = np.concatenate((work.fs[io, :], f[io, :]), axis=-1)
if work.nit == 0:
fo = work_fo
else:
fo = np.concatenate((work_fo[:, 0:1], work_fo[:, -2*n:]), axis=-1)
work.fs = np.zeros((len(ic), work.fs.shape[-1] + 2*n_new))
work.fs[ic] = work_fc
work.fs[io] = work_fo
wc, wo = _differentiate_weights(work, n)
work.df_last = work.df.copy()
work.df[ic] = fc @ wc / work.h
work.df[io] = fo @ wo / work.h
work.df[il] *= -1
work.h /= work.fac
work.error_last = work.error
# Simple error estimate - the difference in derivative estimates between
# this iteration and the last. This is typically conservative because if
# convergence has begin, the true error is much closer to the difference
# between the current estimate and the *next* error estimate. However,
# we could use Richarson extrapolation to produce an error estimate that
# is one order higher, and take the difference between that and
# `work.df` (which would just be constant factor that depends on `fac`.)
work.error = abs(work.df - work.df_last)
def check_termination(work):
"""Terminate due to convergence, non-finite values, or error increase"""
stop = np.zeros_like(work.df).astype(bool)
i = work.error < work.atol + work.rtol*abs(work.df)
work.status[i] = eim._ECONVERGED
stop[i] = True
if work.nit > 0:
i = ~((np.isfinite(work.x) & np.isfinite(work.df)) | stop)
work.df[i], work.status[i] = np.nan, eim._EVALUEERR
stop[i] = True
# With infinite precision, there is a step size below which
# all smaller step sizes will reduce the error. But in floating point
# arithmetic, catastrophic cancellation will begin to cause the error
# to increase again. This heuristic tries to avoid step sizes that are
# too small. There may be more theoretically sound approaches for
# detecting a step size that minimizes the total error, but this
# heuristic seems simple and effective.
i = (work.error > work.error_last*10) & ~stop
work.status[i] = _EERRORINCREASE
stop[i] = True
return stop
def post_termination_check(work):
return
def customize_result(res, shape):
return shape
return eim._loop(work, callback, shape, maxiter, func, args, dtype,
pre_func_eval, post_func_eval, check_termination,
post_termination_check, customize_result, res_work_pairs,
preserve_shape)
def _differentiate_weights(work, n):
# This produces the weights of the finite difference formula for a given
# stencil. In experiments, use of a second-order central difference formula
# with Richardson extrapolation was more accurate numerically, but it was
# more complicated, and it would have become even more complicated when
# adding support for one-sided differences. However, now that all the
# function evaluation values are stored, they can be processed in whatever
# way is desired to produce the derivative estimate. We leave alternative
# approaches to future work. To be more self-contained, here is the theory
# for deriving the weights below.
#
# Recall that the Taylor expansion of a univariate, scalar-values function
# about a point `x` may be expressed as:
# f(x + h) = f(x) + f'(x)*h + f''(x)/2!*h**2 + O(h**3)
# Suppose we evaluate f(x), f(x+h), and f(x-h). We have:
# f(x) = f(x)
# f(x + h) = f(x) + f'(x)*h + f''(x)/2!*h**2 + O(h**3)
# f(x - h) = f(x) - f'(x)*h + f''(x)/2!*h**2 + O(h**3)
# We can solve for weights `wi` such that:
# w1*f(x) = w1*(f(x))
# + w2*f(x + h) = w2*(f(x) + f'(x)*h + f''(x)/2!*h**2) + O(h**3)
# + w3*f(x - h) = w3*(f(x) - f'(x)*h + f''(x)/2!*h**2) + O(h**3)
# = 0 + f'(x)*h + 0 + O(h**3)
# Then
# f'(x) ~ (w1*f(x) + w2*f(x+h) + w3*f(x-h))/h
# is a finite difference derivative approximation with error O(h**2),
# and so it is said to be a "second-order" approximation. Under certain
# conditions (e.g. well-behaved function, `h` sufficiently small), the
# error in the approximation will decrease with h**2; that is, if `h` is
# reduced by a factor of 2, the error is reduced by a factor of 4.
#
# By default, we use eighth-order formulae. Our central-difference formula
# uses abscissae:
# x-h/c**3, x-h/c**2, x-h/c, x-h, x, x+h, x+h/c, x+h/c**2, x+h/c**3
# where `c` is the step factor. (Typically, the step factor is greater than
# one, so the outermost points - as written above - are actually closest to
# `x`.) This "stencil" is chosen so that each iteration, the step can be
# reduced by the factor `c`, and most of the function evaluations can be
# reused with the new step size. For example, in the next iteration, we
# will have:
# x-h/c**4, x-h/c**3, x-h/c**2, x-h/c, x, x+h/c, x+h/c**2, x+h/c**3, x+h/c**4
# We do not reuse `x-h` and `x+h` for the new derivative estimate.
# While this would increase the order of the formula and thus the
# theoretical convergence rate, it is also less stable numerically.
# (As noted above, there are other ways of processing the values that are
# more stable. Thus, even now we store `f(x-h)` and `f(x+h)` in `work.fs`
# to simplify future development of this sort of improvement.)
#
# The (right) one-sided formula is produced similarly using abscissae
# x, x+h, x+h/d, x+h/d**2, ..., x+h/d**6, x+h/d**7, x+h/d**7
# where `d` is the square root of `c`. (The left one-sided formula simply
# uses -h.) When the step size is reduced by factor `c = d**2`, we have
# abscissae:
# x, x+h/d**2, x+h/d**3..., x+h/d**8, x+h/d**9, x+h/d**9
# `d` is chosen as the square root of `c` so that the rate of the step-size
# reduction is the same per iteration as in the central difference case.
# Note that because the central difference formulas are inherently of even
# order, for simplicity, we use only even-order formulas for one-sided
# differences, too.
# It's possible for the user to specify `fac` in, say, double precision but
# `x` and `args` in single precision. `fac` gets converted to single
# precision, but we should always use double precision for the intermediate
# calculations here to avoid additional error in the weights.
fac = work.fac.astype(np.float64)
# Note that if the user switches back to floating point precision with
# `x` and `args`, then `fac` will not necessarily equal the (lower
# precision) cached `_differentiate_weights.fac`, and the weights will
# need to be recalculated. This could be fixed, but it's late, and of
# low consequence.
if fac != _differentiate_weights.fac:
_differentiate_weights.central = []
_differentiate_weights.right = []
_differentiate_weights.fac = fac
if len(_differentiate_weights.central) != 2*n + 1:
# Central difference weights. Consider refactoring this; it could
# probably be more compact.
i = np.arange(-n, n + 1)
p = np.abs(i) - 1. # center point has power `p` -1, but sign `s` is 0
s = np.sign(i)
h = s / fac ** p
A = np.vander(h, increasing=True).T
b = np.zeros(2*n + 1)
b[1] = 1
weights = np.linalg.solve(A, b)
# Enforce identities to improve accuracy
weights[n] = 0
for i in range(n):
weights[-i-1] = -weights[i]
# Cache the weights. We only need to calculate them once unless
# the step factor changes.
_differentiate_weights.central = weights
# One-sided difference weights. The left one-sided weights (with
# negative steps) are simply the negative of the right one-sided
# weights, so no need to compute them separately.
i = np.arange(2*n + 1)
p = i - 1.
s = np.sign(i)
h = s / np.sqrt(fac) ** p
A = np.vander(h, increasing=True).T
b = np.zeros(2 * n + 1)
b[1] = 1
weights = np.linalg.solve(A, b)
_differentiate_weights.right = weights
return (_differentiate_weights.central.astype(work.dtype, copy=False),
_differentiate_weights.right.astype(work.dtype, copy=False))
_differentiate_weights.central = []
_differentiate_weights.right = []
_differentiate_weights.fac = None
|