File size: 11,630 Bytes
fa6fb51 |
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 |
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); you may not use this file except in compliance
# with the License. You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing,
# software distributed under the License is distributed on an
# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
# KIND, either express or implied. See the License for the
# specific language governing permissions and limitations
# under the License.
# cython: language_level = 3
from cython.operator cimport dereference as deref
from libcpp.vector cimport vector as std_vector
from pyarrow import Buffer, py_buffer
from pyarrow._compute cimport Expression
from pyarrow.lib import frombytes, tobytes
from pyarrow.lib cimport *
from pyarrow.includes.libarrow cimport *
from pyarrow.includes.libarrow_substrait cimport *
# TODO GH-37235: Fix exception handling
cdef CDeclaration _create_named_table_provider(
dict named_args, const std_vector[c_string]& names, const CSchema& schema
) noexcept:
cdef:
c_string c_name
shared_ptr[CTable] c_in_table
shared_ptr[CTableSourceNodeOptions] c_tablesourceopts
shared_ptr[CExecNodeOptions] c_input_node_opts
vector[CDeclaration.Input] no_c_inputs
py_names = []
for i in range(names.size()):
c_name = names[i]
py_names.append(frombytes(c_name))
py_schema = pyarrow_wrap_schema(make_shared[CSchema](schema))
py_table = named_args["provider"](py_names, py_schema)
c_in_table = pyarrow_unwrap_table(py_table)
c_tablesourceopts = make_shared[CTableSourceNodeOptions](c_in_table)
c_input_node_opts = static_pointer_cast[CExecNodeOptions, CTableSourceNodeOptions](
c_tablesourceopts)
return CDeclaration(tobytes("table_source"),
no_c_inputs, c_input_node_opts)
def run_query(plan, *, table_provider=None, use_threads=True):
"""
Execute a Substrait plan and read the results as a RecordBatchReader.
Parameters
----------
plan : Union[Buffer, bytes]
The serialized Substrait plan to execute.
table_provider : object (optional)
A function to resolve any NamedTable relation to a table.
The function will receive two arguments which will be a list
of strings representing the table name and a pyarrow.Schema representing
the expected schema and should return a pyarrow.Table.
use_threads : bool, default True
If True then multiple threads will be used to run the query. If False then
all CPU intensive work will be done on the calling thread.
Returns
-------
RecordBatchReader
A reader containing the result of the executed query
Examples
--------
>>> import pyarrow as pa
>>> from pyarrow.lib import tobytes
>>> import pyarrow.substrait as substrait
>>> test_table_1 = pa.Table.from_pydict({"x": [1, 2, 3]})
>>> test_table_2 = pa.Table.from_pydict({"x": [4, 5, 6]})
>>> def table_provider(names, schema):
... if not names:
... raise Exception("No names provided")
... elif names[0] == "t1":
... return test_table_1
... elif names[1] == "t2":
... return test_table_2
... else:
... raise Exception("Unrecognized table name")
...
>>> substrait_query = '''
... {
... "relations": [
... {"rel": {
... "read": {
... "base_schema": {
... "struct": {
... "types": [
... {"i64": {}}
... ]
... },
... "names": [
... "x"
... ]
... },
... "namedTable": {
... "names": ["t1"]
... }
... }
... }}
... ]
... }
... '''
>>> buf = pa._substrait._parse_json_plan(tobytes(substrait_query))
>>> reader = pa.substrait.run_query(buf, table_provider=table_provider)
>>> reader.read_all()
pyarrow.Table
x: int64
----
x: [[1,2,3]]
"""
cdef:
CResult[shared_ptr[CRecordBatchReader]] c_res_reader
shared_ptr[CRecordBatchReader] c_reader
RecordBatchReader reader
shared_ptr[CBuffer] c_buf_plan
CConversionOptions c_conversion_options
c_bool c_use_threads
c_use_threads = use_threads
if isinstance(plan, bytes):
c_buf_plan = pyarrow_unwrap_buffer(py_buffer(plan))
elif isinstance(plan, Buffer):
c_buf_plan = pyarrow_unwrap_buffer(plan)
else:
raise TypeError(
f"Expected 'pyarrow.Buffer' or bytes, got '{type(plan)}'")
if table_provider is not None:
named_table_args = {
"provider": table_provider
}
c_conversion_options.named_table_provider = BindFunction[CNamedTableProvider](
&_create_named_table_provider, named_table_args)
with nogil:
c_res_reader = ExecuteSerializedPlan(
deref(c_buf_plan), default_extension_id_registry(),
GetFunctionRegistry(), c_conversion_options, c_use_threads)
c_reader = GetResultValue(c_res_reader)
reader = RecordBatchReader.__new__(RecordBatchReader)
reader.reader = c_reader
return reader
def _parse_json_plan(plan):
"""
Parse a JSON plan into equivalent serialized Protobuf.
Parameters
----------
plan : bytes
Substrait plan in JSON.
Returns
-------
Buffer
A buffer containing the serialized Protobuf plan.
"""
cdef:
CResult[shared_ptr[CBuffer]] c_res_buffer
c_string c_str_plan
shared_ptr[CBuffer] c_buf_plan
c_str_plan = plan
c_res_buffer = SerializeJsonPlan(c_str_plan)
with nogil:
c_buf_plan = GetResultValue(c_res_buffer)
return pyarrow_wrap_buffer(c_buf_plan)
def serialize_expressions(exprs, names, schema, *, allow_arrow_extensions=False):
"""
Serialize a collection of expressions into Substrait
Substrait expressions must be bound to a schema. For example,
the Substrait expression ``a:i32 + b:i32`` is different from the
Substrait expression ``a:i64 + b:i64``. Pyarrow expressions are
typically unbound. For example, both of the above expressions
would be represented as ``a + b`` in pyarrow.
This means a schema must be provided when serializing an expression.
It also means that the serialization may fail if a matching function
call cannot be found for the expression.
Parameters
----------
exprs : list of Expression
The expressions to serialize
names : list of str
Names for the expressions
schema : Schema
The schema the expressions will be bound to
allow_arrow_extensions : bool, default False
If False then only functions that are part of the core Substrait function
definitions will be allowed. Set this to True to allow pyarrow-specific functions
and user defined functions but the result may not be accepted by other
compute libraries.
Returns
-------
Buffer
An ExtendedExpression message containing the serialized expressions
"""
cdef:
CResult[shared_ptr[CBuffer]] c_res_buffer
shared_ptr[CBuffer] c_buffer
CNamedExpression c_named_expr
CBoundExpressions c_bound_exprs
CConversionOptions c_conversion_options
if len(exprs) != len(names):
raise ValueError("exprs and names need to have the same length")
for expr, name in zip(exprs, names):
if not isinstance(expr, Expression):
raise TypeError(f"Expected Expression, got '{type(expr)}' in exprs")
if not isinstance(name, str):
raise TypeError(f"Expected str, got '{type(name)}' in names")
c_named_expr.expression = (<Expression> expr).unwrap()
c_named_expr.name = tobytes(<str> name)
c_bound_exprs.named_expressions.push_back(c_named_expr)
c_bound_exprs.schema = (<Schema> schema).sp_schema
c_conversion_options.allow_arrow_extensions = allow_arrow_extensions
with nogil:
c_res_buffer = SerializeExpressions(c_bound_exprs, c_conversion_options)
c_buffer = GetResultValue(c_res_buffer)
return pyarrow_wrap_buffer(c_buffer)
cdef class BoundExpressions(_Weakrefable):
"""
A collection of named expressions and the schema they are bound to
This is equivalent to the Substrait ExtendedExpression message
"""
cdef:
CBoundExpressions c_bound_exprs
def __init__(self):
msg = 'BoundExpressions is an abstract class thus cannot be initialized.'
raise TypeError(msg)
cdef void init(self, CBoundExpressions bound_expressions):
self.c_bound_exprs = bound_expressions
@property
def schema(self):
"""
The common schema that all expressions are bound to
"""
return pyarrow_wrap_schema(self.c_bound_exprs.schema)
@property
def expressions(self):
"""
A dict from expression name to expression
"""
expr_dict = {}
for named_expr in self.c_bound_exprs.named_expressions:
name = frombytes(named_expr.name)
expr = Expression.wrap(named_expr.expression)
expr_dict[name] = expr
return expr_dict
@staticmethod
cdef wrap(const CBoundExpressions& bound_expressions):
cdef BoundExpressions self = BoundExpressions.__new__(BoundExpressions)
self.init(bound_expressions)
return self
def deserialize_expressions(buf):
"""
Deserialize an ExtendedExpression Substrait message into a BoundExpressions object
Parameters
----------
buf : Buffer or bytes
The message to deserialize
Returns
-------
BoundExpressions
The deserialized expressions, their names, and the bound schema
"""
cdef:
shared_ptr[CBuffer] c_buffer
CResult[CBoundExpressions] c_res_bound_exprs
CBoundExpressions c_bound_exprs
if isinstance(buf, bytes):
c_buffer = pyarrow_unwrap_buffer(py_buffer(buf))
elif isinstance(buf, Buffer):
c_buffer = pyarrow_unwrap_buffer(buf)
else:
raise TypeError(
f"Expected 'pyarrow.Buffer' or bytes, got '{type(buf)}'")
with nogil:
c_res_bound_exprs = DeserializeExpressions(deref(c_buffer))
c_bound_exprs = GetResultValue(c_res_bound_exprs)
return BoundExpressions.wrap(c_bound_exprs)
def get_supported_functions():
"""
Get a list of Substrait functions that the underlying
engine currently supports.
Returns
-------
list[str]
A list of function ids encoded as '{uri}#{name}'
"""
cdef:
ExtensionIdRegistry* c_id_registry
std_vector[c_string] c_ids
c_id_registry = default_extension_id_registry()
c_ids = c_id_registry.GetSupportedSubstraitFunctions()
functions_list = []
for c_id in c_ids:
functions_list.append(frombytes(c_id))
return functions_list
|