peacock-data-public-datasets-idc-cronscript
/
venv
/lib
/python3.10
/site-packages
/scipy
/linalg
/tests
/test_fblas.py
# Test interfaces to fortran blas. | |
# | |
# The tests are more of interface than they are of the underlying blas. | |
# Only very small matrices checked -- N=3 or so. | |
# | |
# !! Complex calculations really aren't checked that carefully. | |
# !! Only real valued complex numbers are used in tests. | |
from numpy import float32, float64, complex64, complex128, arange, array, \ | |
zeros, shape, transpose, newaxis, common_type, conjugate | |
from scipy.linalg import _fblas as fblas | |
from numpy.testing import assert_array_equal, \ | |
assert_allclose, assert_array_almost_equal, assert_ | |
import pytest | |
# decimal accuracy to require between Python and LAPACK/BLAS calculations | |
accuracy = 5 | |
# Since numpy.dot likely uses the same blas, use this routine | |
# to check. | |
def matrixmultiply(a, b): | |
if len(b.shape) == 1: | |
b_is_vector = True | |
b = b[:, newaxis] | |
else: | |
b_is_vector = False | |
assert_(a.shape[1] == b.shape[0]) | |
c = zeros((a.shape[0], b.shape[1]), common_type(a, b)) | |
for i in range(a.shape[0]): | |
for j in range(b.shape[1]): | |
s = 0 | |
for k in range(a.shape[1]): | |
s += a[i, k] * b[k, j] | |
c[i, j] = s | |
if b_is_vector: | |
c = c.reshape((a.shape[0],)) | |
return c | |
################################################## | |
# Test blas ?axpy | |
class BaseAxpy: | |
''' Mixin class for axpy tests ''' | |
def test_default_a(self): | |
x = arange(3., dtype=self.dtype) | |
y = arange(3., dtype=x.dtype) | |
real_y = x*1.+y | |
y = self.blas_func(x, y) | |
assert_array_equal(real_y, y) | |
def test_simple(self): | |
x = arange(3., dtype=self.dtype) | |
y = arange(3., dtype=x.dtype) | |
real_y = x*3.+y | |
y = self.blas_func(x, y, a=3.) | |
assert_array_equal(real_y, y) | |
def test_x_stride(self): | |
x = arange(6., dtype=self.dtype) | |
y = zeros(3, x.dtype) | |
y = arange(3., dtype=x.dtype) | |
real_y = x[::2]*3.+y | |
y = self.blas_func(x, y, a=3., n=3, incx=2) | |
assert_array_equal(real_y, y) | |
def test_y_stride(self): | |
x = arange(3., dtype=self.dtype) | |
y = zeros(6, x.dtype) | |
real_y = x*3.+y[::2] | |
y = self.blas_func(x, y, a=3., n=3, incy=2) | |
assert_array_equal(real_y, y[::2]) | |
def test_x_and_y_stride(self): | |
x = arange(12., dtype=self.dtype) | |
y = zeros(6, x.dtype) | |
real_y = x[::4]*3.+y[::2] | |
y = self.blas_func(x, y, a=3., n=3, incx=4, incy=2) | |
assert_array_equal(real_y, y[::2]) | |
def test_x_bad_size(self): | |
x = arange(12., dtype=self.dtype) | |
y = zeros(6, x.dtype) | |
with pytest.raises(Exception, match='failed for 1st keyword'): | |
self.blas_func(x, y, n=4, incx=5) | |
def test_y_bad_size(self): | |
x = arange(12., dtype=self.dtype) | |
y = zeros(6, x.dtype) | |
with pytest.raises(Exception, match='failed for 1st keyword'): | |
self.blas_func(x, y, n=3, incy=5) | |
try: | |
class TestSaxpy(BaseAxpy): | |
blas_func = fblas.saxpy | |
dtype = float32 | |
except AttributeError: | |
class TestSaxpy: | |
pass | |
class TestDaxpy(BaseAxpy): | |
blas_func = fblas.daxpy | |
dtype = float64 | |
try: | |
class TestCaxpy(BaseAxpy): | |
blas_func = fblas.caxpy | |
dtype = complex64 | |
except AttributeError: | |
class TestCaxpy: | |
pass | |
class TestZaxpy(BaseAxpy): | |
blas_func = fblas.zaxpy | |
dtype = complex128 | |
################################################## | |
# Test blas ?scal | |
class BaseScal: | |
''' Mixin class for scal testing ''' | |
def test_simple(self): | |
x = arange(3., dtype=self.dtype) | |
real_x = x*3. | |
x = self.blas_func(3., x) | |
assert_array_equal(real_x, x) | |
def test_x_stride(self): | |
x = arange(6., dtype=self.dtype) | |
real_x = x.copy() | |
real_x[::2] = x[::2]*array(3., self.dtype) | |
x = self.blas_func(3., x, n=3, incx=2) | |
assert_array_equal(real_x, x) | |
def test_x_bad_size(self): | |
x = arange(12., dtype=self.dtype) | |
with pytest.raises(Exception, match='failed for 1st keyword'): | |
self.blas_func(2., x, n=4, incx=5) | |
try: | |
class TestSscal(BaseScal): | |
blas_func = fblas.sscal | |
dtype = float32 | |
except AttributeError: | |
class TestSscal: | |
pass | |
class TestDscal(BaseScal): | |
blas_func = fblas.dscal | |
dtype = float64 | |
try: | |
class TestCscal(BaseScal): | |
blas_func = fblas.cscal | |
dtype = complex64 | |
except AttributeError: | |
class TestCscal: | |
pass | |
class TestZscal(BaseScal): | |
blas_func = fblas.zscal | |
dtype = complex128 | |
################################################## | |
# Test blas ?copy | |
class BaseCopy: | |
''' Mixin class for copy testing ''' | |
def test_simple(self): | |
x = arange(3., dtype=self.dtype) | |
y = zeros(shape(x), x.dtype) | |
y = self.blas_func(x, y) | |
assert_array_equal(x, y) | |
def test_x_stride(self): | |
x = arange(6., dtype=self.dtype) | |
y = zeros(3, x.dtype) | |
y = self.blas_func(x, y, n=3, incx=2) | |
assert_array_equal(x[::2], y) | |
def test_y_stride(self): | |
x = arange(3., dtype=self.dtype) | |
y = zeros(6, x.dtype) | |
y = self.blas_func(x, y, n=3, incy=2) | |
assert_array_equal(x, y[::2]) | |
def test_x_and_y_stride(self): | |
x = arange(12., dtype=self.dtype) | |
y = zeros(6, x.dtype) | |
y = self.blas_func(x, y, n=3, incx=4, incy=2) | |
assert_array_equal(x[::4], y[::2]) | |
def test_x_bad_size(self): | |
x = arange(12., dtype=self.dtype) | |
y = zeros(6, x.dtype) | |
with pytest.raises(Exception, match='failed for 1st keyword'): | |
self.blas_func(x, y, n=4, incx=5) | |
def test_y_bad_size(self): | |
x = arange(12., dtype=self.dtype) | |
y = zeros(6, x.dtype) | |
with pytest.raises(Exception, match='failed for 1st keyword'): | |
self.blas_func(x, y, n=3, incy=5) | |
# def test_y_bad_type(self): | |
## Hmmm. Should this work? What should be the output. | |
# x = arange(3.,dtype=self.dtype) | |
# y = zeros(shape(x)) | |
# self.blas_func(x,y) | |
# assert_array_equal(x,y) | |
try: | |
class TestScopy(BaseCopy): | |
blas_func = fblas.scopy | |
dtype = float32 | |
except AttributeError: | |
class TestScopy: | |
pass | |
class TestDcopy(BaseCopy): | |
blas_func = fblas.dcopy | |
dtype = float64 | |
try: | |
class TestCcopy(BaseCopy): | |
blas_func = fblas.ccopy | |
dtype = complex64 | |
except AttributeError: | |
class TestCcopy: | |
pass | |
class TestZcopy(BaseCopy): | |
blas_func = fblas.zcopy | |
dtype = complex128 | |
################################################## | |
# Test blas ?swap | |
class BaseSwap: | |
''' Mixin class for swap tests ''' | |
def test_simple(self): | |
x = arange(3., dtype=self.dtype) | |
y = zeros(shape(x), x.dtype) | |
desired_x = y.copy() | |
desired_y = x.copy() | |
x, y = self.blas_func(x, y) | |
assert_array_equal(desired_x, x) | |
assert_array_equal(desired_y, y) | |
def test_x_stride(self): | |
x = arange(6., dtype=self.dtype) | |
y = zeros(3, x.dtype) | |
desired_x = y.copy() | |
desired_y = x.copy()[::2] | |
x, y = self.blas_func(x, y, n=3, incx=2) | |
assert_array_equal(desired_x, x[::2]) | |
assert_array_equal(desired_y, y) | |
def test_y_stride(self): | |
x = arange(3., dtype=self.dtype) | |
y = zeros(6, x.dtype) | |
desired_x = y.copy()[::2] | |
desired_y = x.copy() | |
x, y = self.blas_func(x, y, n=3, incy=2) | |
assert_array_equal(desired_x, x) | |
assert_array_equal(desired_y, y[::2]) | |
def test_x_and_y_stride(self): | |
x = arange(12., dtype=self.dtype) | |
y = zeros(6, x.dtype) | |
desired_x = y.copy()[::2] | |
desired_y = x.copy()[::4] | |
x, y = self.blas_func(x, y, n=3, incx=4, incy=2) | |
assert_array_equal(desired_x, x[::4]) | |
assert_array_equal(desired_y, y[::2]) | |
def test_x_bad_size(self): | |
x = arange(12., dtype=self.dtype) | |
y = zeros(6, x.dtype) | |
with pytest.raises(Exception, match='failed for 1st keyword'): | |
self.blas_func(x, y, n=4, incx=5) | |
def test_y_bad_size(self): | |
x = arange(12., dtype=self.dtype) | |
y = zeros(6, x.dtype) | |
with pytest.raises(Exception, match='failed for 1st keyword'): | |
self.blas_func(x, y, n=3, incy=5) | |
try: | |
class TestSswap(BaseSwap): | |
blas_func = fblas.sswap | |
dtype = float32 | |
except AttributeError: | |
class TestSswap: | |
pass | |
class TestDswap(BaseSwap): | |
blas_func = fblas.dswap | |
dtype = float64 | |
try: | |
class TestCswap(BaseSwap): | |
blas_func = fblas.cswap | |
dtype = complex64 | |
except AttributeError: | |
class TestCswap: | |
pass | |
class TestZswap(BaseSwap): | |
blas_func = fblas.zswap | |
dtype = complex128 | |
################################################## | |
# Test blas ?gemv | |
# This will be a mess to test all cases. | |
class BaseGemv: | |
''' Mixin class for gemv tests ''' | |
def get_data(self, x_stride=1, y_stride=1): | |
mult = array(1, dtype=self.dtype) | |
if self.dtype in [complex64, complex128]: | |
mult = array(1+1j, dtype=self.dtype) | |
from numpy.random import normal, seed | |
seed(1234) | |
alpha = array(1., dtype=self.dtype) * mult | |
beta = array(1., dtype=self.dtype) * mult | |
a = normal(0., 1., (3, 3)).astype(self.dtype) * mult | |
x = arange(shape(a)[0]*x_stride, dtype=self.dtype) * mult | |
y = arange(shape(a)[1]*y_stride, dtype=self.dtype) * mult | |
return alpha, beta, a, x, y | |
def test_simple(self): | |
alpha, beta, a, x, y = self.get_data() | |
desired_y = alpha*matrixmultiply(a, x)+beta*y | |
y = self.blas_func(alpha, a, x, beta, y) | |
assert_array_almost_equal(desired_y, y) | |
def test_default_beta_y(self): | |
alpha, beta, a, x, y = self.get_data() | |
desired_y = matrixmultiply(a, x) | |
y = self.blas_func(1, a, x) | |
assert_array_almost_equal(desired_y, y) | |
def test_simple_transpose(self): | |
alpha, beta, a, x, y = self.get_data() | |
desired_y = alpha*matrixmultiply(transpose(a), x)+beta*y | |
y = self.blas_func(alpha, a, x, beta, y, trans=1) | |
assert_array_almost_equal(desired_y, y) | |
def test_simple_transpose_conj(self): | |
alpha, beta, a, x, y = self.get_data() | |
desired_y = alpha*matrixmultiply(transpose(conjugate(a)), x)+beta*y | |
y = self.blas_func(alpha, a, x, beta, y, trans=2) | |
assert_array_almost_equal(desired_y, y) | |
def test_x_stride(self): | |
alpha, beta, a, x, y = self.get_data(x_stride=2) | |
desired_y = alpha*matrixmultiply(a, x[::2])+beta*y | |
y = self.blas_func(alpha, a, x, beta, y, incx=2) | |
assert_array_almost_equal(desired_y, y) | |
def test_x_stride_transpose(self): | |
alpha, beta, a, x, y = self.get_data(x_stride=2) | |
desired_y = alpha*matrixmultiply(transpose(a), x[::2])+beta*y | |
y = self.blas_func(alpha, a, x, beta, y, trans=1, incx=2) | |
assert_array_almost_equal(desired_y, y) | |
def test_x_stride_assert(self): | |
# What is the use of this test? | |
alpha, beta, a, x, y = self.get_data(x_stride=2) | |
with pytest.raises(Exception, match='failed for 3rd argument'): | |
y = self.blas_func(1, a, x, 1, y, trans=0, incx=3) | |
with pytest.raises(Exception, match='failed for 3rd argument'): | |
y = self.blas_func(1, a, x, 1, y, trans=1, incx=3) | |
def test_y_stride(self): | |
alpha, beta, a, x, y = self.get_data(y_stride=2) | |
desired_y = y.copy() | |
desired_y[::2] = alpha*matrixmultiply(a, x)+beta*y[::2] | |
y = self.blas_func(alpha, a, x, beta, y, incy=2) | |
assert_array_almost_equal(desired_y, y) | |
def test_y_stride_transpose(self): | |
alpha, beta, a, x, y = self.get_data(y_stride=2) | |
desired_y = y.copy() | |
desired_y[::2] = alpha*matrixmultiply(transpose(a), x)+beta*y[::2] | |
y = self.blas_func(alpha, a, x, beta, y, trans=1, incy=2) | |
assert_array_almost_equal(desired_y, y) | |
def test_y_stride_assert(self): | |
# What is the use of this test? | |
alpha, beta, a, x, y = self.get_data(y_stride=2) | |
with pytest.raises(Exception, match='failed for 2nd keyword'): | |
y = self.blas_func(1, a, x, 1, y, trans=0, incy=3) | |
with pytest.raises(Exception, match='failed for 2nd keyword'): | |
y = self.blas_func(1, a, x, 1, y, trans=1, incy=3) | |
try: | |
class TestSgemv(BaseGemv): | |
blas_func = fblas.sgemv | |
dtype = float32 | |
def test_sgemv_on_osx(self): | |
from itertools import product | |
import sys | |
import numpy as np | |
if sys.platform != 'darwin': | |
return | |
def aligned_array(shape, align, dtype, order='C'): | |
# Make array shape `shape` with aligned at `align` bytes | |
d = dtype() | |
# Make array of correct size with `align` extra bytes | |
N = np.prod(shape) | |
tmp = np.zeros(N * d.nbytes + align, dtype=np.uint8) | |
address = tmp.__array_interface__["data"][0] | |
# Find offset into array giving desired alignment | |
for offset in range(align): | |
if (address + offset) % align == 0: | |
break | |
tmp = tmp[offset:offset+N*d.nbytes].view(dtype=dtype) | |
return tmp.reshape(shape, order=order) | |
def as_aligned(arr, align, dtype, order='C'): | |
# Copy `arr` into an aligned array with same shape | |
aligned = aligned_array(arr.shape, align, dtype, order) | |
aligned[:] = arr[:] | |
return aligned | |
def assert_dot_close(A, X, desired): | |
assert_allclose(self.blas_func(1.0, A, X), desired, | |
rtol=1e-5, atol=1e-7) | |
testdata = product((15, 32), (10000,), (200, 89), ('C', 'F')) | |
for align, m, n, a_order in testdata: | |
A_d = np.random.rand(m, n) | |
X_d = np.random.rand(n) | |
desired = np.dot(A_d, X_d) | |
# Calculation with aligned single precision | |
A_f = as_aligned(A_d, align, np.float32, order=a_order) | |
X_f = as_aligned(X_d, align, np.float32, order=a_order) | |
assert_dot_close(A_f, X_f, desired) | |
except AttributeError: | |
class TestSgemv: | |
pass | |
class TestDgemv(BaseGemv): | |
blas_func = fblas.dgemv | |
dtype = float64 | |
try: | |
class TestCgemv(BaseGemv): | |
blas_func = fblas.cgemv | |
dtype = complex64 | |
except AttributeError: | |
class TestCgemv: | |
pass | |
class TestZgemv(BaseGemv): | |
blas_func = fblas.zgemv | |
dtype = complex128 | |
""" | |
################################################## | |
### Test blas ?ger | |
### This will be a mess to test all cases. | |
class BaseGer: | |
def get_data(self,x_stride=1,y_stride=1): | |
from numpy.random import normal, seed | |
seed(1234) | |
alpha = array(1., dtype = self.dtype) | |
a = normal(0.,1.,(3,3)).astype(self.dtype) | |
x = arange(shape(a)[0]*x_stride,dtype=self.dtype) | |
y = arange(shape(a)[1]*y_stride,dtype=self.dtype) | |
return alpha,a,x,y | |
def test_simple(self): | |
alpha,a,x,y = self.get_data() | |
# transpose takes care of Fortran vs. C(and Python) memory layout | |
desired_a = alpha*transpose(x[:,newaxis]*y) + a | |
self.blas_func(x,y,a) | |
assert_array_almost_equal(desired_a,a) | |
def test_x_stride(self): | |
alpha,a,x,y = self.get_data(x_stride=2) | |
desired_a = alpha*transpose(x[::2,newaxis]*y) + a | |
self.blas_func(x,y,a,incx=2) | |
assert_array_almost_equal(desired_a,a) | |
def test_x_stride_assert(self): | |
alpha,a,x,y = self.get_data(x_stride=2) | |
with pytest.raises(ValueError, match='foo'): | |
self.blas_func(x,y,a,incx=3) | |
def test_y_stride(self): | |
alpha,a,x,y = self.get_data(y_stride=2) | |
desired_a = alpha*transpose(x[:,newaxis]*y[::2]) + a | |
self.blas_func(x,y,a,incy=2) | |
assert_array_almost_equal(desired_a,a) | |
def test_y_stride_assert(self): | |
alpha,a,x,y = self.get_data(y_stride=2) | |
with pytest.raises(ValueError, match='foo'): | |
self.blas_func(a,x,y,incy=3) | |
class TestSger(BaseGer): | |
blas_func = fblas.sger | |
dtype = float32 | |
class TestDger(BaseGer): | |
blas_func = fblas.dger | |
dtype = float64 | |
""" | |
################################################## | |
# Test blas ?gerc | |
# This will be a mess to test all cases. | |
""" | |
class BaseGerComplex(BaseGer): | |
def get_data(self,x_stride=1,y_stride=1): | |
from numpy.random import normal, seed | |
seed(1234) | |
alpha = array(1+1j, dtype = self.dtype) | |
a = normal(0.,1.,(3,3)).astype(self.dtype) | |
a = a + normal(0.,1.,(3,3)) * array(1j, dtype = self.dtype) | |
x = normal(0.,1.,shape(a)[0]*x_stride).astype(self.dtype) | |
x = x + x * array(1j, dtype = self.dtype) | |
y = normal(0.,1.,shape(a)[1]*y_stride).astype(self.dtype) | |
y = y + y * array(1j, dtype = self.dtype) | |
return alpha,a,x,y | |
def test_simple(self): | |
alpha,a,x,y = self.get_data() | |
# transpose takes care of Fortran vs. C(and Python) memory layout | |
a = a * array(0.,dtype = self.dtype) | |
#desired_a = alpha*transpose(x[:,newaxis]*self.transform(y)) + a | |
desired_a = alpha*transpose(x[:,newaxis]*y) + a | |
#self.blas_func(x,y,a,alpha = alpha) | |
fblas.cgeru(x,y,a,alpha = alpha) | |
assert_array_almost_equal(desired_a,a) | |
#def test_x_stride(self): | |
# alpha,a,x,y = self.get_data(x_stride=2) | |
# desired_a = alpha*transpose(x[::2,newaxis]*self.transform(y)) + a | |
# self.blas_func(x,y,a,incx=2) | |
# assert_array_almost_equal(desired_a,a) | |
#def test_y_stride(self): | |
# alpha,a,x,y = self.get_data(y_stride=2) | |
# desired_a = alpha*transpose(x[:,newaxis]*self.transform(y[::2])) + a | |
# self.blas_func(x,y,a,incy=2) | |
# assert_array_almost_equal(desired_a,a) | |
class TestCgeru(BaseGerComplex): | |
blas_func = fblas.cgeru | |
dtype = complex64 | |
def transform(self,x): | |
return x | |
class TestZgeru(BaseGerComplex): | |
blas_func = fblas.zgeru | |
dtype = complex128 | |
def transform(self,x): | |
return x | |
class TestCgerc(BaseGerComplex): | |
blas_func = fblas.cgerc | |
dtype = complex64 | |
def transform(self,x): | |
return conjugate(x) | |
class TestZgerc(BaseGerComplex): | |
blas_func = fblas.zgerc | |
dtype = complex128 | |
def transform(self,x): | |
return conjugate(x) | |
""" | |