peacock-data-public-datasets-idc-cronscript
/
venv
/lib
/python3.10
/site-packages
/pyarrow
/include
/arrow
/util
/bitmap.h
// Licensed to the Apache Software Foundation (ASF) under one | |
// or more contributor license agreements. See the NOTICE file | |
// distributed with this work for additional information | |
// regarding copyright ownership. The ASF licenses this file | |
// to you under the Apache License, Version 2.0 (the | |
// "License"); you may not use this file except in compliance | |
// with the License. You may obtain a copy of the License at | |
// | |
// http://www.apache.org/licenses/LICENSE-2.0 | |
// | |
// Unless required by applicable law or agreed to in writing, | |
// software distributed under the License is distributed on an | |
// "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY | |
// KIND, either express or implied. See the License for the | |
// specific language governing permissions and limitations | |
// under the License. | |
namespace arrow { | |
class BooleanArray; | |
namespace internal { | |
class ARROW_EXPORT Bitmap : public util::ToStringOstreamable<Bitmap>, | |
public util::EqualityComparable<Bitmap> { | |
public: | |
Bitmap() = default; | |
Bitmap(const std::shared_ptr<Buffer>& buffer, int64_t offset, int64_t length) | |
: data_(buffer->data()), offset_(offset), length_(length) { | |
if (buffer->is_mutable()) { | |
mutable_data_ = buffer->mutable_data(); | |
} | |
} | |
Bitmap(const void* data, int64_t offset, int64_t length) | |
: data_(reinterpret_cast<const uint8_t*>(data)), offset_(offset), length_(length) {} | |
Bitmap(void* data, int64_t offset, int64_t length) | |
: data_(reinterpret_cast<const uint8_t*>(data)), | |
mutable_data_(reinterpret_cast<uint8_t*>(data)), | |
offset_(offset), | |
length_(length) {} | |
Bitmap Slice(int64_t offset) const { | |
if (mutable_data_ != NULLPTR) { | |
return {mutable_data_, offset_ + offset, length_ - offset}; | |
} else { | |
return {data_, offset_ + offset, length_ - offset}; | |
} | |
} | |
Bitmap Slice(int64_t offset, int64_t length) const { | |
if (mutable_data_ != NULLPTR) { | |
return {mutable_data_, offset_ + offset, length}; | |
} else { | |
return {data_, offset_ + offset, length}; | |
} | |
} | |
std::string ToString() const; | |
bool Equals(const Bitmap& other) const; | |
std::string Diff(const Bitmap& other) const; | |
bool GetBit(int64_t i) const { return bit_util::GetBit(data_, i + offset_); } | |
bool operator[](int64_t i) const { return GetBit(i); } | |
void SetBitTo(int64_t i, bool v) const { | |
bit_util::SetBitTo(mutable_data_, i + offset_, v); | |
} | |
void SetBitsTo(bool v) { bit_util::SetBitsTo(mutable_data_, offset_, length_, v); } | |
void CopyFrom(const Bitmap& other); | |
void CopyFromInverted(const Bitmap& other); | |
/// \brief Visit bits from each bitmap as bitset<N> | |
/// | |
/// All bitmaps must have identical length. | |
template <size_t N, typename Visitor> | |
static void VisitBits(const Bitmap (&bitmaps)[N], Visitor&& visitor) { | |
int64_t bit_length = BitLength(bitmaps, N); | |
std::bitset<N> bits; | |
for (int64_t bit_i = 0; bit_i < bit_length; ++bit_i) { | |
for (size_t i = 0; i < N; ++i) { | |
bits[i] = bitmaps[i].GetBit(bit_i); | |
} | |
visitor(bits); | |
} | |
} | |
/// \brief Visit bits from each bitmap as bitset<N> | |
/// | |
/// All bitmaps must have identical length. | |
template <size_t N, typename Visitor> | |
static void VisitBits(const std::array<Bitmap, N>& bitmaps, Visitor&& visitor) { | |
int64_t bit_length = BitLength(bitmaps); | |
std::bitset<N> bits; | |
for (int64_t bit_i = 0; bit_i < bit_length; ++bit_i) { | |
for (size_t i = 0; i < N; ++i) { | |
bits[i] = bitmaps[i].GetBit(bit_i); | |
} | |
visitor(bits); | |
} | |
} | |
/// \brief Visit words of bits from each bitmap as array<Word, N> | |
/// | |
/// All bitmaps must have identical length. The first bit in a visited bitmap | |
/// may be offset within the first visited word, but words will otherwise contain | |
/// densely packed bits loaded from the bitmap. That offset within the first word is | |
/// returned. | |
/// | |
/// TODO(bkietz) allow for early termination | |
// NOTE: this function is efficient on 3+ sufficiently large bitmaps. | |
// It also has a large prolog / epilog overhead and should be used | |
// carefully in other cases. | |
// For 2 bitmaps or less, and/or smaller bitmaps, see also VisitTwoBitBlocksVoid | |
// and BitmapUInt64Reader. | |
template <size_t N, typename Visitor, | |
typename Word = typename std::decay< | |
internal::call_traits::argument_type<0, Visitor&&>>::type::value_type> | |
static int64_t VisitWords(const Bitmap (&bitmaps_arg)[N], Visitor&& visitor) { | |
constexpr int64_t kBitWidth = sizeof(Word) * 8; | |
// local, mutable variables which will be sliced/decremented to represent consumption: | |
Bitmap bitmaps[N]; | |
int64_t offsets[N]; | |
int64_t bit_length = BitLength(bitmaps_arg, N); | |
util::span<const Word> words[N]; | |
for (size_t i = 0; i < N; ++i) { | |
bitmaps[i] = bitmaps_arg[i]; | |
offsets[i] = bitmaps[i].template word_offset<Word>(); | |
assert(offsets[i] >= 0 && offsets[i] < kBitWidth); | |
words[i] = bitmaps[i].template words<Word>(); | |
} | |
auto consume = [&](int64_t consumed_bits) { | |
for (size_t i = 0; i < N; ++i) { | |
bitmaps[i] = bitmaps[i].Slice(consumed_bits, bit_length - consumed_bits); | |
offsets[i] = bitmaps[i].template word_offset<Word>(); | |
assert(offsets[i] >= 0 && offsets[i] < kBitWidth); | |
words[i] = bitmaps[i].template words<Word>(); | |
} | |
bit_length -= consumed_bits; | |
}; | |
std::array<Word, N> visited_words; | |
visited_words.fill(0); | |
if (bit_length <= kBitWidth * 2) { | |
// bitmaps fit into one or two words so don't bother with optimization | |
while (bit_length > 0) { | |
auto leading_bits = std::min(bit_length, kBitWidth); | |
SafeLoadWords(bitmaps, 0, leading_bits, false, &visited_words); | |
visitor(visited_words); | |
consume(leading_bits); | |
} | |
return 0; | |
} | |
int64_t max_offset = *std::max_element(offsets, offsets + N); | |
int64_t min_offset = *std::min_element(offsets, offsets + N); | |
if (max_offset > 0) { | |
// consume leading bits | |
auto leading_bits = kBitWidth - min_offset; | |
SafeLoadWords(bitmaps, 0, leading_bits, true, &visited_words); | |
visitor(visited_words); | |
consume(leading_bits); | |
} | |
assert(*std::min_element(offsets, offsets + N) == 0); | |
int64_t whole_word_count = bit_length / kBitWidth; | |
assert(whole_word_count >= 1); | |
if (min_offset == max_offset) { | |
// all offsets were identical, all leading bits have been consumed | |
assert( | |
std::all_of(offsets, offsets + N, [](int64_t offset) { return offset == 0; })); | |
for (int64_t word_i = 0; word_i < whole_word_count; ++word_i) { | |
for (size_t i = 0; i < N; ++i) { | |
visited_words[i] = words[i][word_i]; | |
} | |
visitor(visited_words); | |
} | |
consume(whole_word_count * kBitWidth); | |
} else { | |
// leading bits from potentially incomplete words have been consumed | |
// word_i such that words[i][word_i] and words[i][word_i + 1] are lie entirely | |
// within the bitmap for all i | |
for (int64_t word_i = 0; word_i < whole_word_count - 1; ++word_i) { | |
for (size_t i = 0; i < N; ++i) { | |
if (offsets[i] == 0) { | |
visited_words[i] = words[i][word_i]; | |
} else { | |
auto words0 = bit_util::ToLittleEndian(words[i][word_i]); | |
auto words1 = bit_util::ToLittleEndian(words[i][word_i + 1]); | |
visited_words[i] = bit_util::FromLittleEndian( | |
(words0 >> offsets[i]) | (words1 << (kBitWidth - offsets[i]))); | |
} | |
} | |
visitor(visited_words); | |
} | |
consume((whole_word_count - 1) * kBitWidth); | |
SafeLoadWords(bitmaps, 0, kBitWidth, false, &visited_words); | |
visitor(visited_words); | |
consume(kBitWidth); | |
} | |
// load remaining bits | |
if (bit_length > 0) { | |
SafeLoadWords(bitmaps, 0, bit_length, false, &visited_words); | |
visitor(visited_words); | |
} | |
return min_offset; | |
} | |
template <size_t N, size_t M, typename ReaderT, typename WriterT, typename Visitor, | |
typename Word = typename std::decay< | |
internal::call_traits::argument_type<0, Visitor&&>>::type::value_type> | |
static void RunVisitWordsAndWriteLoop(int64_t bit_length, | |
std::array<ReaderT, N>& readers, | |
std::array<WriterT, M>& writers, | |
Visitor&& visitor) { | |
constexpr int64_t kBitWidth = sizeof(Word) * 8; | |
std::array<Word, N> visited_words; | |
std::array<Word, M> output_words; | |
// every reader will have same number of words, since they are same length'ed | |
// TODO($JIRA) this will be inefficient in some cases. When there are offsets beyond | |
// Word boundary, every Word would have to be created from 2 adjoining Words | |
auto n_words = readers[0].words(); | |
bit_length -= n_words * kBitWidth; | |
while (n_words--) { | |
// first collect all words to visited_words array | |
for (size_t i = 0; i < N; i++) { | |
visited_words[i] = readers[i].NextWord(); | |
} | |
visitor(visited_words, &output_words); | |
for (size_t i = 0; i < M; i++) { | |
writers[i].PutNextWord(output_words[i]); | |
} | |
} | |
// every reader will have same number of trailing bytes, because of the above reason | |
// tailing portion could be more than one word! (ref: BitmapWordReader constructor) | |
// remaining full/ partial words to write | |
if (bit_length) { | |
// convert the word visitor lambda to a byte_visitor | |
auto byte_visitor = [&](const std::array<uint8_t, N>& in, | |
std::array<uint8_t, M>* out) { | |
std::array<Word, N> in_words; | |
std::array<Word, M> out_words; | |
std::copy(in.begin(), in.end(), in_words.begin()); | |
visitor(in_words, &out_words); | |
for (size_t i = 0; i < M; i++) { | |
out->at(i) = static_cast<uint8_t>(out_words[i]); | |
} | |
}; | |
std::array<uint8_t, N> visited_bytes; | |
std::array<uint8_t, M> output_bytes; | |
int n_bytes = readers[0].trailing_bytes(); | |
while (n_bytes--) { | |
visited_bytes.fill(0); | |
output_bytes.fill(0); | |
int valid_bits; | |
for (size_t i = 0; i < N; i++) { | |
visited_bytes[i] = readers[i].NextTrailingByte(valid_bits); | |
} | |
byte_visitor(visited_bytes, &output_bytes); | |
for (size_t i = 0; i < M; i++) { | |
writers[i].PutNextTrailingByte(output_bytes[i], valid_bits); | |
} | |
} | |
} | |
} | |
/// \brief Visit words of bits from each input bitmap as array<Word, N> and collects | |
/// outputs to an array<Word, M>, to be written into the output bitmaps accordingly. | |
/// | |
/// All bitmaps must have identical length. The first bit in a visited bitmap | |
/// may be offset within the first visited word, but words will otherwise contain | |
/// densely packed bits loaded from the bitmap. That offset within the first word is | |
/// returned. | |
/// Visitor is expected to have the following signature | |
/// [](const std::array<Word, N>& in_words, std::array<Word, M>* out_words){...} | |
/// | |
// NOTE: this function is efficient on 3+ sufficiently large bitmaps. | |
// It also has a large prolog / epilog overhead and should be used | |
// carefully in other cases. | |
// For 2 bitmaps or less, and/or smaller bitmaps, see also VisitTwoBitBlocksVoid | |
// and BitmapUInt64Reader. | |
template <size_t N, size_t M, typename Visitor, | |
typename Word = typename std::decay< | |
internal::call_traits::argument_type<0, Visitor&&>>::type::value_type> | |
static void VisitWordsAndWrite(const std::array<Bitmap, N>& bitmaps_arg, | |
std::array<Bitmap, M>* out_bitmaps_arg, | |
Visitor&& visitor) { | |
int64_t bit_length = BitLength(bitmaps_arg); | |
assert(bit_length == BitLength(*out_bitmaps_arg)); | |
// if both input and output bitmaps have no byte offset, then use special template | |
if (std::all_of(bitmaps_arg.begin(), bitmaps_arg.end(), | |
[](const Bitmap& b) { return b.offset_ % 8 == 0; }) && | |
std::all_of(out_bitmaps_arg->begin(), out_bitmaps_arg->end(), | |
[](const Bitmap& b) { return b.offset_ % 8 == 0; })) { | |
std::array<BitmapWordReader<Word, /*may_have_byte_offset=*/false>, N> readers; | |
for (size_t i = 0; i < N; ++i) { | |
const Bitmap& in_bitmap = bitmaps_arg[i]; | |
readers[i] = BitmapWordReader<Word, /*may_have_byte_offset=*/false>( | |
in_bitmap.data_, in_bitmap.offset_, in_bitmap.length_); | |
} | |
std::array<BitmapWordWriter<Word, /*may_have_byte_offset=*/false>, M> writers; | |
for (size_t i = 0; i < M; ++i) { | |
const Bitmap& out_bitmap = out_bitmaps_arg->at(i); | |
writers[i] = BitmapWordWriter<Word, /*may_have_byte_offset=*/false>( | |
out_bitmap.mutable_data_, out_bitmap.offset_, out_bitmap.length_); | |
} | |
RunVisitWordsAndWriteLoop(bit_length, readers, writers, visitor); | |
} else { | |
std::array<BitmapWordReader<Word>, N> readers; | |
for (size_t i = 0; i < N; ++i) { | |
const Bitmap& in_bitmap = bitmaps_arg[i]; | |
readers[i] = | |
BitmapWordReader<Word>(in_bitmap.data_, in_bitmap.offset_, in_bitmap.length_); | |
} | |
std::array<BitmapWordWriter<Word>, M> writers; | |
for (size_t i = 0; i < M; ++i) { | |
const Bitmap& out_bitmap = out_bitmaps_arg->at(i); | |
writers[i] = BitmapWordWriter<Word>(out_bitmap.mutable_data_, out_bitmap.offset_, | |
out_bitmap.length_); | |
} | |
RunVisitWordsAndWriteLoop(bit_length, readers, writers, visitor); | |
} | |
} | |
const uint8_t* data() const { return data_; } | |
uint8_t* mutable_data() { return mutable_data_; } | |
/// offset of first bit relative to buffer().data() | |
int64_t offset() const { return offset_; } | |
/// number of bits in this Bitmap | |
int64_t length() const { return length_; } | |
/// span of all bytes which contain any bit in this Bitmap | |
util::span<const uint8_t> bytes() const { | |
auto byte_offset = offset_ / 8; | |
auto byte_count = bit_util::CeilDiv(offset_ + length_, 8) - byte_offset; | |
return {data_ + byte_offset, static_cast<size_t>(byte_count)}; | |
} | |
private: | |
/// span of all Words which contain any bit in this Bitmap | |
/// | |
/// For example, given Word=uint16_t and a bitmap spanning bits [20, 36) | |
/// words() would span bits [16, 48). | |
/// | |
/// 0 16 32 48 64 | |
/// |-------|-------|------|------| (buffer) | |
/// [ ] (bitmap) | |
/// |-------|------| (returned words) | |
/// | |
/// \warning The words may contain bytes which lie outside the buffer or are | |
/// uninitialized. | |
template <typename Word> | |
util::span<const Word> words() const { | |
auto bytes_addr = reinterpret_cast<intptr_t>(bytes().data()); | |
auto words_addr = bytes_addr - bytes_addr % sizeof(Word); | |
auto word_byte_count = | |
bit_util::RoundUpToPowerOf2(static_cast<int64_t>(bytes_addr + bytes().size()), | |
static_cast<int64_t>(sizeof(Word))) - | |
words_addr; | |
return {reinterpret_cast<const Word*>(words_addr), | |
static_cast<size_t>(word_byte_count / sizeof(Word))}; | |
} | |
/// offset of first bit relative to words<Word>().data() | |
template <typename Word> | |
int64_t word_offset() const { | |
return offset_ + 8 * (reinterpret_cast<intptr_t>(data_) - | |
reinterpret_cast<intptr_t>(words<Word>().data())); | |
} | |
/// load words from bitmaps bitwise | |
template <size_t N, typename Word> | |
static void SafeLoadWords(const Bitmap (&bitmaps)[N], int64_t offset, | |
int64_t out_length, bool set_trailing_bits, | |
std::array<Word, N>* out) { | |
out->fill(0); | |
int64_t out_offset = set_trailing_bits ? sizeof(Word) * 8 - out_length : 0; | |
Bitmap slices[N], out_bitmaps[N]; | |
for (size_t i = 0; i < N; ++i) { | |
slices[i] = bitmaps[i].Slice(offset, out_length); | |
out_bitmaps[i] = Bitmap(&out->at(i), out_offset, out_length); | |
} | |
int64_t bit_i = 0; | |
Bitmap::VisitBits(slices, [&](std::bitset<N> bits) { | |
for (size_t i = 0; i < N; ++i) { | |
out_bitmaps[i].SetBitTo(bit_i, bits[i]); | |
} | |
++bit_i; | |
}); | |
} | |
/// assert bitmaps have identical length and return that length | |
static int64_t BitLength(const Bitmap* bitmaps, size_t N); | |
template <size_t N> | |
static int64_t BitLength(const std::array<Bitmap, N>& bitmaps) { | |
for (size_t i = 1; i < N; ++i) { | |
assert(bitmaps[i].length() == bitmaps[0].length()); | |
} | |
return bitmaps[0].length(); | |
} | |
const uint8_t* data_ = NULLPTR; | |
uint8_t* mutable_data_ = NULLPTR; | |
int64_t offset_ = 0, length_ = 0; | |
}; | |
} // namespace internal | |
} // namespace arrow | |