peacock-data-public-datasets-idc-cronscript
/
venv
/lib
/python3.10
/site-packages
/joblib
/compressor.py
"""Classes and functions for managing compressors.""" | |
import io | |
import zlib | |
from joblib.backports import LooseVersion | |
try: | |
from threading import RLock | |
except ImportError: | |
from dummy_threading import RLock | |
try: | |
import bz2 | |
except ImportError: | |
bz2 = None | |
try: | |
import lz4 | |
from lz4.frame import LZ4FrameFile | |
except ImportError: | |
lz4 = None | |
try: | |
import lzma | |
except ImportError: | |
lzma = None | |
LZ4_NOT_INSTALLED_ERROR = ('LZ4 is not installed. Install it with pip: ' | |
'https://python-lz4.readthedocs.io/') | |
# Registered compressors | |
_COMPRESSORS = {} | |
# Magic numbers of supported compression file formats. | |
_ZFILE_PREFIX = b'ZF' # used with pickle files created before 0.9.3. | |
_ZLIB_PREFIX = b'\x78' | |
_GZIP_PREFIX = b'\x1f\x8b' | |
_BZ2_PREFIX = b'BZ' | |
_XZ_PREFIX = b'\xfd\x37\x7a\x58\x5a' | |
_LZMA_PREFIX = b'\x5d\x00' | |
_LZ4_PREFIX = b'\x04\x22\x4D\x18' | |
def register_compressor(compressor_name, compressor, | |
force=False): | |
"""Register a new compressor. | |
Parameters | |
---------- | |
compressor_name: str. | |
The name of the compressor. | |
compressor: CompressorWrapper | |
An instance of a 'CompressorWrapper'. | |
""" | |
global _COMPRESSORS | |
if not isinstance(compressor_name, str): | |
raise ValueError("Compressor name should be a string, " | |
"'{}' given.".format(compressor_name)) | |
if not isinstance(compressor, CompressorWrapper): | |
raise ValueError("Compressor should implement the CompressorWrapper " | |
"interface, '{}' given.".format(compressor)) | |
if (compressor.fileobj_factory is not None and | |
(not hasattr(compressor.fileobj_factory, 'read') or | |
not hasattr(compressor.fileobj_factory, 'write') or | |
not hasattr(compressor.fileobj_factory, 'seek') or | |
not hasattr(compressor.fileobj_factory, 'tell'))): | |
raise ValueError("Compressor 'fileobj_factory' attribute should " | |
"implement the file object interface, '{}' given." | |
.format(compressor.fileobj_factory)) | |
if compressor_name in _COMPRESSORS and not force: | |
raise ValueError("Compressor '{}' already registered." | |
.format(compressor_name)) | |
_COMPRESSORS[compressor_name] = compressor | |
class CompressorWrapper(): | |
"""A wrapper around a compressor file object. | |
Attributes | |
---------- | |
obj: a file-like object | |
The object must implement the buffer interface and will be used | |
internally to compress/decompress the data. | |
prefix: bytestring | |
A bytestring corresponding to the magic number that identifies the | |
file format associated to the compressor. | |
extension: str | |
The file extension used to automatically select this compressor during | |
a dump to a file. | |
""" | |
def __init__(self, obj, prefix=b'', extension=''): | |
self.fileobj_factory = obj | |
self.prefix = prefix | |
self.extension = extension | |
def compressor_file(self, fileobj, compresslevel=None): | |
"""Returns an instance of a compressor file object.""" | |
if compresslevel is None: | |
return self.fileobj_factory(fileobj, 'wb') | |
else: | |
return self.fileobj_factory(fileobj, 'wb', | |
compresslevel=compresslevel) | |
def decompressor_file(self, fileobj): | |
"""Returns an instance of a decompressor file object.""" | |
return self.fileobj_factory(fileobj, 'rb') | |
class BZ2CompressorWrapper(CompressorWrapper): | |
prefix = _BZ2_PREFIX | |
extension = '.bz2' | |
def __init__(self): | |
if bz2 is not None: | |
self.fileobj_factory = bz2.BZ2File | |
else: | |
self.fileobj_factory = None | |
def _check_versions(self): | |
if bz2 is None: | |
raise ValueError('bz2 module is not compiled on your python ' | |
'standard library.') | |
def compressor_file(self, fileobj, compresslevel=None): | |
"""Returns an instance of a compressor file object.""" | |
self._check_versions() | |
if compresslevel is None: | |
return self.fileobj_factory(fileobj, 'wb') | |
else: | |
return self.fileobj_factory(fileobj, 'wb', | |
compresslevel=compresslevel) | |
def decompressor_file(self, fileobj): | |
"""Returns an instance of a decompressor file object.""" | |
self._check_versions() | |
fileobj = self.fileobj_factory(fileobj, 'rb') | |
return fileobj | |
class LZMACompressorWrapper(CompressorWrapper): | |
prefix = _LZMA_PREFIX | |
extension = '.lzma' | |
_lzma_format_name = 'FORMAT_ALONE' | |
def __init__(self): | |
if lzma is not None: | |
self.fileobj_factory = lzma.LZMAFile | |
self._lzma_format = getattr(lzma, self._lzma_format_name) | |
else: | |
self.fileobj_factory = None | |
def _check_versions(self): | |
if lzma is None: | |
raise ValueError('lzma module is not compiled on your python ' | |
'standard library.') | |
def compressor_file(self, fileobj, compresslevel=None): | |
"""Returns an instance of a compressor file object.""" | |
if compresslevel is None: | |
return self.fileobj_factory(fileobj, 'wb', | |
format=self._lzma_format) | |
else: | |
return self.fileobj_factory(fileobj, 'wb', | |
format=self._lzma_format, | |
preset=compresslevel) | |
def decompressor_file(self, fileobj): | |
"""Returns an instance of a decompressor file object.""" | |
return lzma.LZMAFile(fileobj, 'rb') | |
class XZCompressorWrapper(LZMACompressorWrapper): | |
prefix = _XZ_PREFIX | |
extension = '.xz' | |
_lzma_format_name = 'FORMAT_XZ' | |
class LZ4CompressorWrapper(CompressorWrapper): | |
prefix = _LZ4_PREFIX | |
extension = '.lz4' | |
def __init__(self): | |
if lz4 is not None: | |
self.fileobj_factory = LZ4FrameFile | |
else: | |
self.fileobj_factory = None | |
def _check_versions(self): | |
if lz4 is None: | |
raise ValueError(LZ4_NOT_INSTALLED_ERROR) | |
lz4_version = lz4.__version__ | |
if lz4_version.startswith("v"): | |
lz4_version = lz4_version[1:] | |
if LooseVersion(lz4_version) < LooseVersion('0.19'): | |
raise ValueError(LZ4_NOT_INSTALLED_ERROR) | |
def compressor_file(self, fileobj, compresslevel=None): | |
"""Returns an instance of a compressor file object.""" | |
self._check_versions() | |
if compresslevel is None: | |
return self.fileobj_factory(fileobj, 'wb') | |
else: | |
return self.fileobj_factory(fileobj, 'wb', | |
compression_level=compresslevel) | |
def decompressor_file(self, fileobj): | |
"""Returns an instance of a decompressor file object.""" | |
self._check_versions() | |
return self.fileobj_factory(fileobj, 'rb') | |
############################################################################### | |
# base file compression/decompression object definition | |
_MODE_CLOSED = 0 | |
_MODE_READ = 1 | |
_MODE_READ_EOF = 2 | |
_MODE_WRITE = 3 | |
_BUFFER_SIZE = 8192 | |
class BinaryZlibFile(io.BufferedIOBase): | |
"""A file object providing transparent zlib (de)compression. | |
TODO python2_drop: is it still needed since we dropped Python 2 support A | |
BinaryZlibFile can act as a wrapper for an existing file object, or refer | |
directly to a named file on disk. | |
Note that BinaryZlibFile provides only a *binary* file interface: data read | |
is returned as bytes, and data to be written should be given as bytes. | |
This object is an adaptation of the BZ2File object and is compatible with | |
versions of python >= 2.7. | |
If filename is a str or bytes object, it gives the name | |
of the file to be opened. Otherwise, it should be a file object, | |
which will be used to read or write the compressed data. | |
mode can be 'rb' for reading (default) or 'wb' for (over)writing | |
If mode is 'wb', compresslevel can be a number between 1 | |
and 9 specifying the level of compression: 1 produces the least | |
compression, and 9 produces the most compression. 3 is the default. | |
""" | |
wbits = zlib.MAX_WBITS | |
def __init__(self, filename, mode="rb", compresslevel=3): | |
# This lock must be recursive, so that BufferedIOBase's | |
# readline(), readlines() and writelines() don't deadlock. | |
self._lock = RLock() | |
self._fp = None | |
self._closefp = False | |
self._mode = _MODE_CLOSED | |
self._pos = 0 | |
self._size = -1 | |
self.compresslevel = compresslevel | |
if not isinstance(compresslevel, int) or not (1 <= compresslevel <= 9): | |
raise ValueError("'compresslevel' must be an integer " | |
"between 1 and 9. You provided 'compresslevel={}'" | |
.format(compresslevel)) | |
if mode == "rb": | |
self._mode = _MODE_READ | |
self._decompressor = zlib.decompressobj(self.wbits) | |
self._buffer = b"" | |
self._buffer_offset = 0 | |
elif mode == "wb": | |
self._mode = _MODE_WRITE | |
self._compressor = zlib.compressobj(self.compresslevel, | |
zlib.DEFLATED, self.wbits, | |
zlib.DEF_MEM_LEVEL, 0) | |
else: | |
raise ValueError("Invalid mode: %r" % (mode,)) | |
if isinstance(filename, str): | |
self._fp = io.open(filename, mode) | |
self._closefp = True | |
elif hasattr(filename, "read") or hasattr(filename, "write"): | |
self._fp = filename | |
else: | |
raise TypeError("filename must be a str or bytes object, " | |
"or a file") | |
def close(self): | |
"""Flush and close the file. | |
May be called more than once without error. Once the file is | |
closed, any other operation on it will raise a ValueError. | |
""" | |
with self._lock: | |
if self._mode == _MODE_CLOSED: | |
return | |
try: | |
if self._mode in (_MODE_READ, _MODE_READ_EOF): | |
self._decompressor = None | |
elif self._mode == _MODE_WRITE: | |
self._fp.write(self._compressor.flush()) | |
self._compressor = None | |
finally: | |
try: | |
if self._closefp: | |
self._fp.close() | |
finally: | |
self._fp = None | |
self._closefp = False | |
self._mode = _MODE_CLOSED | |
self._buffer = b"" | |
self._buffer_offset = 0 | |
def closed(self): | |
"""True if this file is closed.""" | |
return self._mode == _MODE_CLOSED | |
def fileno(self): | |
"""Return the file descriptor for the underlying file.""" | |
self._check_not_closed() | |
return self._fp.fileno() | |
def seekable(self): | |
"""Return whether the file supports seeking.""" | |
return self.readable() and self._fp.seekable() | |
def readable(self): | |
"""Return whether the file was opened for reading.""" | |
self._check_not_closed() | |
return self._mode in (_MODE_READ, _MODE_READ_EOF) | |
def writable(self): | |
"""Return whether the file was opened for writing.""" | |
self._check_not_closed() | |
return self._mode == _MODE_WRITE | |
# Mode-checking helper functions. | |
def _check_not_closed(self): | |
if self.closed: | |
fname = getattr(self._fp, 'name', None) | |
msg = "I/O operation on closed file" | |
if fname is not None: | |
msg += " {}".format(fname) | |
msg += "." | |
raise ValueError(msg) | |
def _check_can_read(self): | |
if self._mode not in (_MODE_READ, _MODE_READ_EOF): | |
self._check_not_closed() | |
raise io.UnsupportedOperation("File not open for reading") | |
def _check_can_write(self): | |
if self._mode != _MODE_WRITE: | |
self._check_not_closed() | |
raise io.UnsupportedOperation("File not open for writing") | |
def _check_can_seek(self): | |
if self._mode not in (_MODE_READ, _MODE_READ_EOF): | |
self._check_not_closed() | |
raise io.UnsupportedOperation("Seeking is only supported " | |
"on files open for reading") | |
if not self._fp.seekable(): | |
raise io.UnsupportedOperation("The underlying file object " | |
"does not support seeking") | |
# Fill the readahead buffer if it is empty. Returns False on EOF. | |
def _fill_buffer(self): | |
if self._mode == _MODE_READ_EOF: | |
return False | |
# Depending on the input data, our call to the decompressor may not | |
# return any data. In this case, try again after reading another block. | |
while self._buffer_offset == len(self._buffer): | |
try: | |
rawblock = (self._decompressor.unused_data or | |
self._fp.read(_BUFFER_SIZE)) | |
if not rawblock: | |
raise EOFError | |
except EOFError: | |
# End-of-stream marker and end of file. We're good. | |
self._mode = _MODE_READ_EOF | |
self._size = self._pos | |
return False | |
else: | |
self._buffer = self._decompressor.decompress(rawblock) | |
self._buffer_offset = 0 | |
return True | |
# Read data until EOF. | |
# If return_data is false, consume the data without returning it. | |
def _read_all(self, return_data=True): | |
# The loop assumes that _buffer_offset is 0. Ensure that this is true. | |
self._buffer = self._buffer[self._buffer_offset:] | |
self._buffer_offset = 0 | |
blocks = [] | |
while self._fill_buffer(): | |
if return_data: | |
blocks.append(self._buffer) | |
self._pos += len(self._buffer) | |
self._buffer = b"" | |
if return_data: | |
return b"".join(blocks) | |
# Read a block of up to n bytes. | |
# If return_data is false, consume the data without returning it. | |
def _read_block(self, n_bytes, return_data=True): | |
# If we have enough data buffered, return immediately. | |
end = self._buffer_offset + n_bytes | |
if end <= len(self._buffer): | |
data = self._buffer[self._buffer_offset: end] | |
self._buffer_offset = end | |
self._pos += len(data) | |
return data if return_data else None | |
# The loop assumes that _buffer_offset is 0. Ensure that this is true. | |
self._buffer = self._buffer[self._buffer_offset:] | |
self._buffer_offset = 0 | |
blocks = [] | |
while n_bytes > 0 and self._fill_buffer(): | |
if n_bytes < len(self._buffer): | |
data = self._buffer[:n_bytes] | |
self._buffer_offset = n_bytes | |
else: | |
data = self._buffer | |
self._buffer = b"" | |
if return_data: | |
blocks.append(data) | |
self._pos += len(data) | |
n_bytes -= len(data) | |
if return_data: | |
return b"".join(blocks) | |
def read(self, size=-1): | |
"""Read up to size uncompressed bytes from the file. | |
If size is negative or omitted, read until EOF is reached. | |
Returns b'' if the file is already at EOF. | |
""" | |
with self._lock: | |
self._check_can_read() | |
if size == 0: | |
return b"" | |
elif size < 0: | |
return self._read_all() | |
else: | |
return self._read_block(size) | |
def readinto(self, b): | |
"""Read up to len(b) bytes into b. | |
Returns the number of bytes read (0 for EOF). | |
""" | |
with self._lock: | |
return io.BufferedIOBase.readinto(self, b) | |
def write(self, data): | |
"""Write a byte string to the file. | |
Returns the number of uncompressed bytes written, which is | |
always len(data). Note that due to buffering, the file on disk | |
may not reflect the data written until close() is called. | |
""" | |
with self._lock: | |
self._check_can_write() | |
# Convert data type if called by io.BufferedWriter. | |
if isinstance(data, memoryview): | |
data = data.tobytes() | |
compressed = self._compressor.compress(data) | |
self._fp.write(compressed) | |
self._pos += len(data) | |
return len(data) | |
# Rewind the file to the beginning of the data stream. | |
def _rewind(self): | |
self._fp.seek(0, 0) | |
self._mode = _MODE_READ | |
self._pos = 0 | |
self._decompressor = zlib.decompressobj(self.wbits) | |
self._buffer = b"" | |
self._buffer_offset = 0 | |
def seek(self, offset, whence=0): | |
"""Change the file position. | |
The new position is specified by offset, relative to the | |
position indicated by whence. Values for whence are: | |
0: start of stream (default); offset must not be negative | |
1: current stream position | |
2: end of stream; offset must not be positive | |
Returns the new file position. | |
Note that seeking is emulated, so depending on the parameters, | |
this operation may be extremely slow. | |
""" | |
with self._lock: | |
self._check_can_seek() | |
# Recalculate offset as an absolute file position. | |
if whence == 0: | |
pass | |
elif whence == 1: | |
offset = self._pos + offset | |
elif whence == 2: | |
# Seeking relative to EOF - we need to know the file's size. | |
if self._size < 0: | |
self._read_all(return_data=False) | |
offset = self._size + offset | |
else: | |
raise ValueError("Invalid value for whence: %s" % (whence,)) | |
# Make it so that offset is the number of bytes to skip forward. | |
if offset < self._pos: | |
self._rewind() | |
else: | |
offset -= self._pos | |
# Read and discard data until we reach the desired position. | |
self._read_block(offset, return_data=False) | |
return self._pos | |
def tell(self): | |
"""Return the current file position.""" | |
with self._lock: | |
self._check_not_closed() | |
return self._pos | |
class ZlibCompressorWrapper(CompressorWrapper): | |
def __init__(self): | |
CompressorWrapper.__init__(self, obj=BinaryZlibFile, | |
prefix=_ZLIB_PREFIX, extension='.z') | |
class BinaryGzipFile(BinaryZlibFile): | |
"""A file object providing transparent gzip (de)compression. | |
If filename is a str or bytes object, it gives the name | |
of the file to be opened. Otherwise, it should be a file object, | |
which will be used to read or write the compressed data. | |
mode can be 'rb' for reading (default) or 'wb' for (over)writing | |
If mode is 'wb', compresslevel can be a number between 1 | |
and 9 specifying the level of compression: 1 produces the least | |
compression, and 9 produces the most compression. 3 is the default. | |
""" | |
wbits = 31 # zlib compressor/decompressor wbits value for gzip format. | |
class GzipCompressorWrapper(CompressorWrapper): | |
def __init__(self): | |
CompressorWrapper.__init__(self, obj=BinaryGzipFile, | |
prefix=_GZIP_PREFIX, extension='.gz') | |