peacock-data-public-datasets-idc-cronscript
/
venv
/lib
/python3.10
/site-packages
/scipy
/integrate
/tests
/test_integrate.py
# Authors: Nils Wagner, Ed Schofield, Pauli Virtanen, John Travers | |
""" | |
Tests for numerical integration. | |
""" | |
import numpy as np | |
from numpy import (arange, zeros, array, dot, sqrt, cos, sin, eye, pi, exp, | |
allclose) | |
from numpy.testing import ( | |
assert_, assert_array_almost_equal, | |
assert_allclose, assert_array_equal, assert_equal, assert_warns) | |
from pytest import raises as assert_raises | |
from scipy.integrate import odeint, ode, complex_ode | |
#------------------------------------------------------------------------------ | |
# Test ODE integrators | |
#------------------------------------------------------------------------------ | |
class TestOdeint: | |
# Check integrate.odeint | |
def _do_problem(self, problem): | |
t = arange(0.0, problem.stop_t, 0.05) | |
# Basic case | |
z, infodict = odeint(problem.f, problem.z0, t, full_output=True) | |
assert_(problem.verify(z, t)) | |
# Use tfirst=True | |
z, infodict = odeint(lambda t, y: problem.f(y, t), problem.z0, t, | |
full_output=True, tfirst=True) | |
assert_(problem.verify(z, t)) | |
if hasattr(problem, 'jac'): | |
# Use Dfun | |
z, infodict = odeint(problem.f, problem.z0, t, Dfun=problem.jac, | |
full_output=True) | |
assert_(problem.verify(z, t)) | |
# Use Dfun and tfirst=True | |
z, infodict = odeint(lambda t, y: problem.f(y, t), problem.z0, t, | |
Dfun=lambda t, y: problem.jac(y, t), | |
full_output=True, tfirst=True) | |
assert_(problem.verify(z, t)) | |
def test_odeint(self): | |
for problem_cls in PROBLEMS: | |
problem = problem_cls() | |
if problem.cmplx: | |
continue | |
self._do_problem(problem) | |
class TestODEClass: | |
ode_class = None # Set in subclass. | |
def _do_problem(self, problem, integrator, method='adams'): | |
# ode has callback arguments in different order than odeint | |
def f(t, z): | |
return problem.f(z, t) | |
jac = None | |
if hasattr(problem, 'jac'): | |
def jac(t, z): | |
return problem.jac(z, t) | |
integrator_params = {} | |
if problem.lband is not None or problem.uband is not None: | |
integrator_params['uband'] = problem.uband | |
integrator_params['lband'] = problem.lband | |
ig = self.ode_class(f, jac) | |
ig.set_integrator(integrator, | |
atol=problem.atol/10, | |
rtol=problem.rtol/10, | |
method=method, | |
**integrator_params) | |
ig.set_initial_value(problem.z0, t=0.0) | |
z = ig.integrate(problem.stop_t) | |
assert_array_equal(z, ig.y) | |
assert_(ig.successful(), (problem, method)) | |
assert_(ig.get_return_code() > 0, (problem, method)) | |
assert_(problem.verify(array([z]), problem.stop_t), (problem, method)) | |
class TestOde(TestODEClass): | |
ode_class = ode | |
def test_vode(self): | |
# Check the vode solver | |
for problem_cls in PROBLEMS: | |
problem = problem_cls() | |
if problem.cmplx: | |
continue | |
if not problem.stiff: | |
self._do_problem(problem, 'vode', 'adams') | |
self._do_problem(problem, 'vode', 'bdf') | |
def test_zvode(self): | |
# Check the zvode solver | |
for problem_cls in PROBLEMS: | |
problem = problem_cls() | |
if not problem.stiff: | |
self._do_problem(problem, 'zvode', 'adams') | |
self._do_problem(problem, 'zvode', 'bdf') | |
def test_lsoda(self): | |
# Check the lsoda solver | |
for problem_cls in PROBLEMS: | |
problem = problem_cls() | |
if problem.cmplx: | |
continue | |
self._do_problem(problem, 'lsoda') | |
def test_dopri5(self): | |
# Check the dopri5 solver | |
for problem_cls in PROBLEMS: | |
problem = problem_cls() | |
if problem.cmplx: | |
continue | |
if problem.stiff: | |
continue | |
if hasattr(problem, 'jac'): | |
continue | |
self._do_problem(problem, 'dopri5') | |
def test_dop853(self): | |
# Check the dop853 solver | |
for problem_cls in PROBLEMS: | |
problem = problem_cls() | |
if problem.cmplx: | |
continue | |
if problem.stiff: | |
continue | |
if hasattr(problem, 'jac'): | |
continue | |
self._do_problem(problem, 'dop853') | |
def test_concurrent_fail(self): | |
for sol in ('vode', 'zvode', 'lsoda'): | |
def f(t, y): | |
return 1.0 | |
r = ode(f).set_integrator(sol) | |
r.set_initial_value(0, 0) | |
r2 = ode(f).set_integrator(sol) | |
r2.set_initial_value(0, 0) | |
r.integrate(r.t + 0.1) | |
r2.integrate(r2.t + 0.1) | |
assert_raises(RuntimeError, r.integrate, r.t + 0.1) | |
def test_concurrent_ok(self): | |
def f(t, y): | |
return 1.0 | |
for k in range(3): | |
for sol in ('vode', 'zvode', 'lsoda', 'dopri5', 'dop853'): | |
r = ode(f).set_integrator(sol) | |
r.set_initial_value(0, 0) | |
r2 = ode(f).set_integrator(sol) | |
r2.set_initial_value(0, 0) | |
r.integrate(r.t + 0.1) | |
r2.integrate(r2.t + 0.1) | |
r2.integrate(r2.t + 0.1) | |
assert_allclose(r.y, 0.1) | |
assert_allclose(r2.y, 0.2) | |
for sol in ('dopri5', 'dop853'): | |
r = ode(f).set_integrator(sol) | |
r.set_initial_value(0, 0) | |
r2 = ode(f).set_integrator(sol) | |
r2.set_initial_value(0, 0) | |
r.integrate(r.t + 0.1) | |
r.integrate(r.t + 0.1) | |
r2.integrate(r2.t + 0.1) | |
r.integrate(r.t + 0.1) | |
r2.integrate(r2.t + 0.1) | |
assert_allclose(r.y, 0.3) | |
assert_allclose(r2.y, 0.2) | |
class TestComplexOde(TestODEClass): | |
ode_class = complex_ode | |
def test_vode(self): | |
# Check the vode solver | |
for problem_cls in PROBLEMS: | |
problem = problem_cls() | |
if not problem.stiff: | |
self._do_problem(problem, 'vode', 'adams') | |
else: | |
self._do_problem(problem, 'vode', 'bdf') | |
def test_lsoda(self): | |
# Check the lsoda solver | |
for problem_cls in PROBLEMS: | |
problem = problem_cls() | |
self._do_problem(problem, 'lsoda') | |
def test_dopri5(self): | |
# Check the dopri5 solver | |
for problem_cls in PROBLEMS: | |
problem = problem_cls() | |
if problem.stiff: | |
continue | |
if hasattr(problem, 'jac'): | |
continue | |
self._do_problem(problem, 'dopri5') | |
def test_dop853(self): | |
# Check the dop853 solver | |
for problem_cls in PROBLEMS: | |
problem = problem_cls() | |
if problem.stiff: | |
continue | |
if hasattr(problem, 'jac'): | |
continue | |
self._do_problem(problem, 'dop853') | |
class TestSolout: | |
# Check integrate.ode correctly handles solout for dopri5 and dop853 | |
def _run_solout_test(self, integrator): | |
# Check correct usage of solout | |
ts = [] | |
ys = [] | |
t0 = 0.0 | |
tend = 10.0 | |
y0 = [1.0, 2.0] | |
def solout(t, y): | |
ts.append(t) | |
ys.append(y.copy()) | |
def rhs(t, y): | |
return [y[0] + y[1], -y[1]**2] | |
ig = ode(rhs).set_integrator(integrator) | |
ig.set_solout(solout) | |
ig.set_initial_value(y0, t0) | |
ret = ig.integrate(tend) | |
assert_array_equal(ys[0], y0) | |
assert_array_equal(ys[-1], ret) | |
assert_equal(ts[0], t0) | |
assert_equal(ts[-1], tend) | |
def test_solout(self): | |
for integrator in ('dopri5', 'dop853'): | |
self._run_solout_test(integrator) | |
def _run_solout_after_initial_test(self, integrator): | |
# Check if solout works even if it is set after the initial value. | |
ts = [] | |
ys = [] | |
t0 = 0.0 | |
tend = 10.0 | |
y0 = [1.0, 2.0] | |
def solout(t, y): | |
ts.append(t) | |
ys.append(y.copy()) | |
def rhs(t, y): | |
return [y[0] + y[1], -y[1]**2] | |
ig = ode(rhs).set_integrator(integrator) | |
ig.set_initial_value(y0, t0) | |
ig.set_solout(solout) | |
ret = ig.integrate(tend) | |
assert_array_equal(ys[0], y0) | |
assert_array_equal(ys[-1], ret) | |
assert_equal(ts[0], t0) | |
assert_equal(ts[-1], tend) | |
def test_solout_after_initial(self): | |
for integrator in ('dopri5', 'dop853'): | |
self._run_solout_after_initial_test(integrator) | |
def _run_solout_break_test(self, integrator): | |
# Check correct usage of stopping via solout | |
ts = [] | |
ys = [] | |
t0 = 0.0 | |
tend = 10.0 | |
y0 = [1.0, 2.0] | |
def solout(t, y): | |
ts.append(t) | |
ys.append(y.copy()) | |
if t > tend/2.0: | |
return -1 | |
def rhs(t, y): | |
return [y[0] + y[1], -y[1]**2] | |
ig = ode(rhs).set_integrator(integrator) | |
ig.set_solout(solout) | |
ig.set_initial_value(y0, t0) | |
ret = ig.integrate(tend) | |
assert_array_equal(ys[0], y0) | |
assert_array_equal(ys[-1], ret) | |
assert_equal(ts[0], t0) | |
assert_(ts[-1] > tend/2.0) | |
assert_(ts[-1] < tend) | |
def test_solout_break(self): | |
for integrator in ('dopri5', 'dop853'): | |
self._run_solout_break_test(integrator) | |
class TestComplexSolout: | |
# Check integrate.ode correctly handles solout for dopri5 and dop853 | |
def _run_solout_test(self, integrator): | |
# Check correct usage of solout | |
ts = [] | |
ys = [] | |
t0 = 0.0 | |
tend = 20.0 | |
y0 = [0.0] | |
def solout(t, y): | |
ts.append(t) | |
ys.append(y.copy()) | |
def rhs(t, y): | |
return [1.0/(t - 10.0 - 1j)] | |
ig = complex_ode(rhs).set_integrator(integrator) | |
ig.set_solout(solout) | |
ig.set_initial_value(y0, t0) | |
ret = ig.integrate(tend) | |
assert_array_equal(ys[0], y0) | |
assert_array_equal(ys[-1], ret) | |
assert_equal(ts[0], t0) | |
assert_equal(ts[-1], tend) | |
def test_solout(self): | |
for integrator in ('dopri5', 'dop853'): | |
self._run_solout_test(integrator) | |
def _run_solout_break_test(self, integrator): | |
# Check correct usage of stopping via solout | |
ts = [] | |
ys = [] | |
t0 = 0.0 | |
tend = 20.0 | |
y0 = [0.0] | |
def solout(t, y): | |
ts.append(t) | |
ys.append(y.copy()) | |
if t > tend/2.0: | |
return -1 | |
def rhs(t, y): | |
return [1.0/(t - 10.0 - 1j)] | |
ig = complex_ode(rhs).set_integrator(integrator) | |
ig.set_solout(solout) | |
ig.set_initial_value(y0, t0) | |
ret = ig.integrate(tend) | |
assert_array_equal(ys[0], y0) | |
assert_array_equal(ys[-1], ret) | |
assert_equal(ts[0], t0) | |
assert_(ts[-1] > tend/2.0) | |
assert_(ts[-1] < tend) | |
def test_solout_break(self): | |
for integrator in ('dopri5', 'dop853'): | |
self._run_solout_break_test(integrator) | |
#------------------------------------------------------------------------------ | |
# Test problems | |
#------------------------------------------------------------------------------ | |
class ODE: | |
""" | |
ODE problem | |
""" | |
stiff = False | |
cmplx = False | |
stop_t = 1 | |
z0 = [] | |
lband = None | |
uband = None | |
atol = 1e-6 | |
rtol = 1e-5 | |
class SimpleOscillator(ODE): | |
r""" | |
Free vibration of a simple oscillator:: | |
m \ddot{u} + k u = 0, u(0) = u_0 \dot{u}(0) \dot{u}_0 | |
Solution:: | |
u(t) = u_0*cos(sqrt(k/m)*t)+\dot{u}_0*sin(sqrt(k/m)*t)/sqrt(k/m) | |
""" | |
stop_t = 1 + 0.09 | |
z0 = array([1.0, 0.1], float) | |
k = 4.0 | |
m = 1.0 | |
def f(self, z, t): | |
tmp = zeros((2, 2), float) | |
tmp[0, 1] = 1.0 | |
tmp[1, 0] = -self.k / self.m | |
return dot(tmp, z) | |
def verify(self, zs, t): | |
omega = sqrt(self.k / self.m) | |
u = self.z0[0]*cos(omega*t) + self.z0[1]*sin(omega*t)/omega | |
return allclose(u, zs[:, 0], atol=self.atol, rtol=self.rtol) | |
class ComplexExp(ODE): | |
r"""The equation :lm:`\dot u = i u`""" | |
stop_t = 1.23*pi | |
z0 = exp([1j, 2j, 3j, 4j, 5j]) | |
cmplx = True | |
def f(self, z, t): | |
return 1j*z | |
def jac(self, z, t): | |
return 1j*eye(5) | |
def verify(self, zs, t): | |
u = self.z0 * exp(1j*t) | |
return allclose(u, zs, atol=self.atol, rtol=self.rtol) | |
class Pi(ODE): | |
r"""Integrate 1/(t + 1j) from t=-10 to t=10""" | |
stop_t = 20 | |
z0 = [0] | |
cmplx = True | |
def f(self, z, t): | |
return array([1./(t - 10 + 1j)]) | |
def verify(self, zs, t): | |
u = -2j * np.arctan(10) | |
return allclose(u, zs[-1, :], atol=self.atol, rtol=self.rtol) | |
class CoupledDecay(ODE): | |
r""" | |
3 coupled decays suited for banded treatment | |
(banded mode makes it necessary when N>>3) | |
""" | |
stiff = True | |
stop_t = 0.5 | |
z0 = [5.0, 7.0, 13.0] | |
lband = 1 | |
uband = 0 | |
lmbd = [0.17, 0.23, 0.29] # fictitious decay constants | |
def f(self, z, t): | |
lmbd = self.lmbd | |
return np.array([-lmbd[0]*z[0], | |
-lmbd[1]*z[1] + lmbd[0]*z[0], | |
-lmbd[2]*z[2] + lmbd[1]*z[1]]) | |
def jac(self, z, t): | |
# The full Jacobian is | |
# | |
# [-lmbd[0] 0 0 ] | |
# [ lmbd[0] -lmbd[1] 0 ] | |
# [ 0 lmbd[1] -lmbd[2]] | |
# | |
# The lower and upper bandwidths are lband=1 and uband=0, resp. | |
# The representation of this array in packed format is | |
# | |
# [-lmbd[0] -lmbd[1] -lmbd[2]] | |
# [ lmbd[0] lmbd[1] 0 ] | |
lmbd = self.lmbd | |
j = np.zeros((self.lband + self.uband + 1, 3), order='F') | |
def set_j(ri, ci, val): | |
j[self.uband + ri - ci, ci] = val | |
set_j(0, 0, -lmbd[0]) | |
set_j(1, 0, lmbd[0]) | |
set_j(1, 1, -lmbd[1]) | |
set_j(2, 1, lmbd[1]) | |
set_j(2, 2, -lmbd[2]) | |
return j | |
def verify(self, zs, t): | |
# Formulae derived by hand | |
lmbd = np.array(self.lmbd) | |
d10 = lmbd[1] - lmbd[0] | |
d21 = lmbd[2] - lmbd[1] | |
d20 = lmbd[2] - lmbd[0] | |
e0 = np.exp(-lmbd[0] * t) | |
e1 = np.exp(-lmbd[1] * t) | |
e2 = np.exp(-lmbd[2] * t) | |
u = np.vstack(( | |
self.z0[0] * e0, | |
self.z0[1] * e1 + self.z0[0] * lmbd[0] / d10 * (e0 - e1), | |
self.z0[2] * e2 + self.z0[1] * lmbd[1] / d21 * (e1 - e2) + | |
lmbd[1] * lmbd[0] * self.z0[0] / d10 * | |
(1 / d20 * (e0 - e2) - 1 / d21 * (e1 - e2)))).transpose() | |
return allclose(u, zs, atol=self.atol, rtol=self.rtol) | |
PROBLEMS = [SimpleOscillator, ComplexExp, Pi, CoupledDecay] | |
#------------------------------------------------------------------------------ | |
def f(t, x): | |
dxdt = [x[1], -x[0]] | |
return dxdt | |
def jac(t, x): | |
j = array([[0.0, 1.0], | |
[-1.0, 0.0]]) | |
return j | |
def f1(t, x, omega): | |
dxdt = [omega*x[1], -omega*x[0]] | |
return dxdt | |
def jac1(t, x, omega): | |
j = array([[0.0, omega], | |
[-omega, 0.0]]) | |
return j | |
def f2(t, x, omega1, omega2): | |
dxdt = [omega1*x[1], -omega2*x[0]] | |
return dxdt | |
def jac2(t, x, omega1, omega2): | |
j = array([[0.0, omega1], | |
[-omega2, 0.0]]) | |
return j | |
def fv(t, x, omega): | |
dxdt = [omega[0]*x[1], -omega[1]*x[0]] | |
return dxdt | |
def jacv(t, x, omega): | |
j = array([[0.0, omega[0]], | |
[-omega[1], 0.0]]) | |
return j | |
class ODECheckParameterUse: | |
"""Call an ode-class solver with several cases of parameter use.""" | |
# solver_name must be set before tests can be run with this class. | |
# Set these in subclasses. | |
solver_name = '' | |
solver_uses_jac = False | |
def _get_solver(self, f, jac): | |
solver = ode(f, jac) | |
if self.solver_uses_jac: | |
solver.set_integrator(self.solver_name, atol=1e-9, rtol=1e-7, | |
with_jacobian=self.solver_uses_jac) | |
else: | |
# XXX Shouldn't set_integrator *always* accept the keyword arg | |
# 'with_jacobian', and perhaps raise an exception if it is set | |
# to True if the solver can't actually use it? | |
solver.set_integrator(self.solver_name, atol=1e-9, rtol=1e-7) | |
return solver | |
def _check_solver(self, solver): | |
ic = [1.0, 0.0] | |
solver.set_initial_value(ic, 0.0) | |
solver.integrate(pi) | |
assert_array_almost_equal(solver.y, [-1.0, 0.0]) | |
def test_no_params(self): | |
solver = self._get_solver(f, jac) | |
self._check_solver(solver) | |
def test_one_scalar_param(self): | |
solver = self._get_solver(f1, jac1) | |
omega = 1.0 | |
solver.set_f_params(omega) | |
if self.solver_uses_jac: | |
solver.set_jac_params(omega) | |
self._check_solver(solver) | |
def test_two_scalar_params(self): | |
solver = self._get_solver(f2, jac2) | |
omega1 = 1.0 | |
omega2 = 1.0 | |
solver.set_f_params(omega1, omega2) | |
if self.solver_uses_jac: | |
solver.set_jac_params(omega1, omega2) | |
self._check_solver(solver) | |
def test_vector_param(self): | |
solver = self._get_solver(fv, jacv) | |
omega = [1.0, 1.0] | |
solver.set_f_params(omega) | |
if self.solver_uses_jac: | |
solver.set_jac_params(omega) | |
self._check_solver(solver) | |
def test_warns_on_failure(self): | |
# Set nsteps small to ensure failure | |
solver = self._get_solver(f, jac) | |
solver.set_integrator(self.solver_name, nsteps=1) | |
ic = [1.0, 0.0] | |
solver.set_initial_value(ic, 0.0) | |
assert_warns(UserWarning, solver.integrate, pi) | |
class TestDOPRI5CheckParameterUse(ODECheckParameterUse): | |
solver_name = 'dopri5' | |
solver_uses_jac = False | |
class TestDOP853CheckParameterUse(ODECheckParameterUse): | |
solver_name = 'dop853' | |
solver_uses_jac = False | |
class TestVODECheckParameterUse(ODECheckParameterUse): | |
solver_name = 'vode' | |
solver_uses_jac = True | |
class TestZVODECheckParameterUse(ODECheckParameterUse): | |
solver_name = 'zvode' | |
solver_uses_jac = True | |
class TestLSODACheckParameterUse(ODECheckParameterUse): | |
solver_name = 'lsoda' | |
solver_uses_jac = True | |
def test_odeint_trivial_time(): | |
# Test that odeint succeeds when given a single time point | |
# and full_output=True. This is a regression test for gh-4282. | |
y0 = 1 | |
t = [0] | |
y, info = odeint(lambda y, t: -y, y0, t, full_output=True) | |
assert_array_equal(y, np.array([[y0]])) | |
def test_odeint_banded_jacobian(): | |
# Test the use of the `Dfun`, `ml` and `mu` options of odeint. | |
def func(y, t, c): | |
return c.dot(y) | |
def jac(y, t, c): | |
return c | |
def jac_transpose(y, t, c): | |
return c.T.copy(order='C') | |
def bjac_rows(y, t, c): | |
jac = np.vstack((np.r_[0, np.diag(c, 1)], | |
np.diag(c), | |
np.r_[np.diag(c, -1), 0], | |
np.r_[np.diag(c, -2), 0, 0])) | |
return jac | |
def bjac_cols(y, t, c): | |
return bjac_rows(y, t, c).T.copy(order='C') | |
c = array([[-205, 0.01, 0.00, 0.0], | |
[0.1, -2.50, 0.02, 0.0], | |
[1e-3, 0.01, -2.0, 0.01], | |
[0.00, 0.00, 0.1, -1.0]]) | |
y0 = np.ones(4) | |
t = np.array([0, 5, 10, 100]) | |
# Use the full Jacobian. | |
sol1, info1 = odeint(func, y0, t, args=(c,), full_output=True, | |
atol=1e-13, rtol=1e-11, mxstep=10000, | |
Dfun=jac) | |
# Use the transposed full Jacobian, with col_deriv=True. | |
sol2, info2 = odeint(func, y0, t, args=(c,), full_output=True, | |
atol=1e-13, rtol=1e-11, mxstep=10000, | |
Dfun=jac_transpose, col_deriv=True) | |
# Use the banded Jacobian. | |
sol3, info3 = odeint(func, y0, t, args=(c,), full_output=True, | |
atol=1e-13, rtol=1e-11, mxstep=10000, | |
Dfun=bjac_rows, ml=2, mu=1) | |
# Use the transposed banded Jacobian, with col_deriv=True. | |
sol4, info4 = odeint(func, y0, t, args=(c,), full_output=True, | |
atol=1e-13, rtol=1e-11, mxstep=10000, | |
Dfun=bjac_cols, ml=2, mu=1, col_deriv=True) | |
assert_allclose(sol1, sol2, err_msg="sol1 != sol2") | |
assert_allclose(sol1, sol3, atol=1e-12, err_msg="sol1 != sol3") | |
assert_allclose(sol3, sol4, err_msg="sol3 != sol4") | |
# Verify that the number of jacobian evaluations was the same for the | |
# calls of odeint with a full jacobian and with a banded jacobian. This is | |
# a regression test--there was a bug in the handling of banded jacobians | |
# that resulted in an incorrect jacobian matrix being passed to the LSODA | |
# code. That would cause errors or excessive jacobian evaluations. | |
assert_array_equal(info1['nje'], info2['nje']) | |
assert_array_equal(info3['nje'], info4['nje']) | |
# Test the use of tfirst | |
sol1ty, info1ty = odeint(lambda t, y, c: func(y, t, c), y0, t, args=(c,), | |
full_output=True, atol=1e-13, rtol=1e-11, | |
mxstep=10000, | |
Dfun=lambda t, y, c: jac(y, t, c), tfirst=True) | |
# The code should execute the exact same sequence of floating point | |
# calculations, so these should be exactly equal. We'll be safe and use | |
# a small tolerance. | |
assert_allclose(sol1, sol1ty, rtol=1e-12, err_msg="sol1 != sol1ty") | |
def test_odeint_errors(): | |
def sys1d(x, t): | |
return -100*x | |
def bad1(x, t): | |
return 1.0/0 | |
def bad2(x, t): | |
return "foo" | |
def bad_jac1(x, t): | |
return 1.0/0 | |
def bad_jac2(x, t): | |
return [["foo"]] | |
def sys2d(x, t): | |
return [-100*x[0], -0.1*x[1]] | |
def sys2d_bad_jac(x, t): | |
return [[1.0/0, 0], [0, -0.1]] | |
assert_raises(ZeroDivisionError, odeint, bad1, 1.0, [0, 1]) | |
assert_raises(ValueError, odeint, bad2, 1.0, [0, 1]) | |
assert_raises(ZeroDivisionError, odeint, sys1d, 1.0, [0, 1], Dfun=bad_jac1) | |
assert_raises(ValueError, odeint, sys1d, 1.0, [0, 1], Dfun=bad_jac2) | |
assert_raises(ZeroDivisionError, odeint, sys2d, [1.0, 1.0], [0, 1], | |
Dfun=sys2d_bad_jac) | |
def test_odeint_bad_shapes(): | |
# Tests of some errors that can occur with odeint. | |
def badrhs(x, t): | |
return [1, -1] | |
def sys1(x, t): | |
return -100*x | |
def badjac(x, t): | |
return [[0, 0, 0]] | |
# y0 must be at most 1-d. | |
bad_y0 = [[0, 0], [0, 0]] | |
assert_raises(ValueError, odeint, sys1, bad_y0, [0, 1]) | |
# t must be at most 1-d. | |
bad_t = [[0, 1], [2, 3]] | |
assert_raises(ValueError, odeint, sys1, [10.0], bad_t) | |
# y0 is 10, but badrhs(x, t) returns [1, -1]. | |
assert_raises(RuntimeError, odeint, badrhs, 10, [0, 1]) | |
# shape of array returned by badjac(x, t) is not correct. | |
assert_raises(RuntimeError, odeint, sys1, [10, 10], [0, 1], Dfun=badjac) | |
def test_repeated_t_values(): | |
"""Regression test for gh-8217.""" | |
def func(x, t): | |
return -0.25*x | |
t = np.zeros(10) | |
sol = odeint(func, [1.], t) | |
assert_array_equal(sol, np.ones((len(t), 1))) | |
tau = 4*np.log(2) | |
t = [0]*9 + [tau, 2*tau, 2*tau, 3*tau] | |
sol = odeint(func, [1, 2], t, rtol=1e-12, atol=1e-12) | |
expected_sol = np.array([[1.0, 2.0]]*9 + | |
[[0.5, 1.0], | |
[0.25, 0.5], | |
[0.25, 0.5], | |
[0.125, 0.25]]) | |
assert_allclose(sol, expected_sol) | |
# Edge case: empty t sequence. | |
sol = odeint(func, [1.], []) | |
assert_array_equal(sol, np.array([], dtype=np.float64).reshape((0, 1))) | |
# t values are not monotonic. | |
assert_raises(ValueError, odeint, func, [1.], [0, 1, 0.5, 0]) | |
assert_raises(ValueError, odeint, func, [1, 2, 3], [0, -1, -2, 3]) | |