peacock-data-public-datasets-idc-cronscript
/
venv
/lib
/python3.10
/site-packages
/scipy
/conftest.py
# Pytest customization | |
import json | |
import os | |
import warnings | |
import tempfile | |
import numpy as np | |
import numpy.testing as npt | |
import pytest | |
import hypothesis | |
from scipy._lib._fpumode import get_fpu_mode | |
from scipy._lib._testutils import FPUModeChangeWarning | |
from scipy._lib import _pep440 | |
from scipy._lib._array_api import SCIPY_ARRAY_API, SCIPY_DEVICE | |
def pytest_configure(config): | |
config.addinivalue_line("markers", | |
"slow: Tests that are very slow.") | |
config.addinivalue_line("markers", | |
"xslow: mark test as extremely slow (not run unless explicitly requested)") | |
config.addinivalue_line("markers", | |
"xfail_on_32bit: mark test as failing on 32-bit platforms") | |
try: | |
import pytest_timeout # noqa:F401 | |
except Exception: | |
config.addinivalue_line( | |
"markers", 'timeout: mark a test for a non-default timeout') | |
config.addinivalue_line("markers", | |
"skip_if_array_api(*backends, reasons=None, np_only=False, cpu_only=False): " | |
"mark the desired skip configuration for the `skip_if_array_api` fixture.") | |
def _get_mark(item, name): | |
if _pep440.parse(pytest.__version__) >= _pep440.Version("3.6.0"): | |
mark = item.get_closest_marker(name) | |
else: | |
mark = item.get_marker(name) | |
return mark | |
def pytest_runtest_setup(item): | |
mark = _get_mark(item, "xslow") | |
if mark is not None: | |
try: | |
v = int(os.environ.get('SCIPY_XSLOW', '0')) | |
except ValueError: | |
v = False | |
if not v: | |
pytest.skip("very slow test; " | |
"set environment variable SCIPY_XSLOW=1 to run it") | |
mark = _get_mark(item, 'xfail_on_32bit') | |
if mark is not None and np.intp(0).itemsize < 8: | |
pytest.xfail(f'Fails on our 32-bit test platform(s): {mark.args[0]}') | |
# Older versions of threadpoolctl have an issue that may lead to this | |
# warning being emitted, see gh-14441 | |
with npt.suppress_warnings() as sup: | |
sup.filter(pytest.PytestUnraisableExceptionWarning) | |
try: | |
from threadpoolctl import threadpool_limits | |
HAS_THREADPOOLCTL = True | |
except Exception: # observed in gh-14441: (ImportError, AttributeError) | |
# Optional dependency only. All exceptions are caught, for robustness | |
HAS_THREADPOOLCTL = False | |
if HAS_THREADPOOLCTL: | |
# Set the number of openmp threads based on the number of workers | |
# xdist is using to prevent oversubscription. Simplified version of what | |
# sklearn does (it can rely on threadpoolctl and its builtin OpenMP helper | |
# functions) | |
try: | |
xdist_worker_count = int(os.environ['PYTEST_XDIST_WORKER_COUNT']) | |
except KeyError: | |
# raises when pytest-xdist is not installed | |
return | |
if not os.getenv('OMP_NUM_THREADS'): | |
max_openmp_threads = os.cpu_count() // 2 # use nr of physical cores | |
threads_per_worker = max(max_openmp_threads // xdist_worker_count, 1) | |
try: | |
threadpool_limits(threads_per_worker, user_api='blas') | |
except Exception: | |
# May raise AttributeError for older versions of OpenBLAS. | |
# Catch any error for robustness. | |
return | |
def check_fpu_mode(request): | |
""" | |
Check FPU mode was not changed during the test. | |
""" | |
old_mode = get_fpu_mode() | |
yield | |
new_mode = get_fpu_mode() | |
if old_mode != new_mode: | |
warnings.warn(f"FPU mode changed from {old_mode:#x} to {new_mode:#x} during " | |
"the test", | |
category=FPUModeChangeWarning, stacklevel=0) | |
# Array API backend handling | |
xp_available_backends = {'numpy': np} | |
if SCIPY_ARRAY_API and isinstance(SCIPY_ARRAY_API, str): | |
# fill the dict of backends with available libraries | |
try: | |
import array_api_strict | |
xp_available_backends.update({'array_api_strict': array_api_strict}) | |
except ImportError: | |
pass | |
try: | |
import torch # type: ignore[import] | |
xp_available_backends.update({'pytorch': torch}) | |
# can use `mps` or `cpu` | |
torch.set_default_device(SCIPY_DEVICE) | |
except ImportError: | |
pass | |
try: | |
import cupy # type: ignore[import] | |
xp_available_backends.update({'cupy': cupy}) | |
except ImportError: | |
pass | |
# by default, use all available backends | |
if SCIPY_ARRAY_API.lower() not in ("1", "true"): | |
SCIPY_ARRAY_API_ = json.loads(SCIPY_ARRAY_API) | |
if 'all' in SCIPY_ARRAY_API_: | |
pass # same as True | |
else: | |
# only select a subset of backend by filtering out the dict | |
try: | |
xp_available_backends = { | |
backend: xp_available_backends[backend] | |
for backend in SCIPY_ARRAY_API_ | |
} | |
except KeyError: | |
msg = f"'--array-api-backend' must be in {xp_available_backends.keys()}" | |
raise ValueError(msg) | |
if 'cupy' in xp_available_backends: | |
SCIPY_DEVICE = 'cuda' | |
array_api_compatible = pytest.mark.parametrize("xp", xp_available_backends.values()) | |
def skip_if_array_api(xp, request): | |
""" | |
Skip based on the ``skip_if_array_api`` marker. | |
Parameters | |
---------- | |
*backends : tuple | |
Backends to skip, e.g. ``("array_api_strict", "torch")``. | |
These are overriden when ``np_only`` is ``True``, and are not | |
necessary to provide for non-CPU backends when ``cpu_only`` is ``True``. | |
reasons : list, optional | |
A list of reasons for each skip. When ``np_only`` is ``True``, | |
this should be a singleton list. Otherwise, this should be a list | |
of reasons, one for each corresponding backend in ``backends``. | |
If unprovided, default reasons are used. Note that it is not possible | |
to specify a custom reason with ``cpu_only``. Default: ``None``. | |
np_only : bool, optional | |
When ``True``, the test is skipped for all backends other | |
than the default NumPy backend. There is no need to provide | |
any ``backends`` in this case. To specify a reason, pass a | |
singleton list to ``reasons``. Default: ``False``. | |
cpu_only : bool, optional | |
When ``True``, the test is skipped on non-CPU devices. | |
There is no need to provide any ``backends`` in this case, | |
but any ``backends`` will also be skipped on the CPU. | |
Default: ``False``. | |
""" | |
if "skip_if_array_api" not in request.keywords: | |
return | |
backends = request.keywords["skip_if_array_api"].args | |
kwargs = request.keywords["skip_if_array_api"].kwargs | |
np_only = kwargs.get("np_only", False) | |
cpu_only = kwargs.get("cpu_only", False) | |
if np_only: | |
reasons = kwargs.get("reasons", ["do not run with non-NumPy backends."]) | |
reason = reasons[0] | |
if xp.__name__ != 'numpy': | |
pytest.skip(reason=reason) | |
return | |
if cpu_only: | |
reason = "do not run with `SCIPY_ARRAY_API` set and not on CPU" | |
if SCIPY_ARRAY_API and SCIPY_DEVICE != 'cpu': | |
if xp.__name__ == 'cupy': | |
pytest.skip(reason=reason) | |
elif xp.__name__ == 'torch': | |
if 'cpu' not in torch.empty(0).device.type: | |
pytest.skip(reason=reason) | |
if backends is not None: | |
reasons = kwargs.get("reasons", False) | |
for i, backend in enumerate(backends): | |
if xp.__name__ == backend: | |
if not reasons: | |
reason = f"do not run with array API backend: {backend}" | |
else: | |
reason = reasons[i] | |
pytest.skip(reason=reason) | |
# Following the approach of NumPy's conftest.py... | |
# Use a known and persistent tmpdir for hypothesis' caches, which | |
# can be automatically cleared by the OS or user. | |
hypothesis.configuration.set_hypothesis_home_dir( | |
os.path.join(tempfile.gettempdir(), ".hypothesis") | |
) | |
# We register two custom profiles for SciPy - for details see | |
# https://hypothesis.readthedocs.io/en/latest/settings.html | |
# The first is designed for our own CI runs; the latter also | |
# forces determinism and is designed for use via scipy.test() | |
hypothesis.settings.register_profile( | |
name="nondeterministic", deadline=None, print_blob=True, | |
) | |
hypothesis.settings.register_profile( | |
name="deterministic", | |
deadline=None, print_blob=True, database=None, derandomize=True, | |
suppress_health_check=list(hypothesis.HealthCheck), | |
) | |
# Profile is currently set by environment variable `SCIPY_HYPOTHESIS_PROFILE` | |
# In the future, it would be good to work the choice into dev.py. | |
SCIPY_HYPOTHESIS_PROFILE = os.environ.get("SCIPY_HYPOTHESIS_PROFILE", | |
"deterministic") | |
hypothesis.settings.load_profile(SCIPY_HYPOTHESIS_PROFILE) | |