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- ckpts/universal/global_step80/zero/18.post_attention_layernorm.weight/exp_avg.pt +3 -0
- ckpts/universal/global_step80/zero/18.post_attention_layernorm.weight/exp_avg_sq.pt +3 -0
- ckpts/universal/global_step80/zero/18.post_attention_layernorm.weight/fp32.pt +3 -0
- ckpts/universal/global_step80/zero/20.attention.dense.weight/fp32.pt +3 -0
- ckpts/universal/global_step80/zero/6.attention.dense.weight/exp_avg.pt +3 -0
- ckpts/universal/global_step80/zero/6.attention.dense.weight/exp_avg_sq.pt +3 -0
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- venv/lib/python3.10/site-packages/pyarrow/tests/__pycache__/test_cython.cpython-310.pyc +0 -0
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- venv/lib/python3.10/site-packages/pyarrow/tests/__pycache__/test_fs.cpython-310.pyc +0 -0
- venv/lib/python3.10/site-packages/pyarrow/tests/__pycache__/test_gdb.cpython-310.pyc +0 -0
- venv/lib/python3.10/site-packages/pyarrow/tests/__pycache__/test_io.cpython-310.pyc +0 -0
- venv/lib/python3.10/site-packages/pyarrow/tests/__pycache__/test_json.cpython-310.pyc +0 -0
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- venv/lib/python3.10/site-packages/pyarrow/tests/arrow_16597.py +37 -0
- venv/lib/python3.10/site-packages/pyarrow/tests/extensions.pyx +94 -0
- venv/lib/python3.10/site-packages/pyarrow/tests/interchange/__init__.py +16 -0
- venv/lib/python3.10/site-packages/pyarrow/tests/interchange/__pycache__/__init__.cpython-310.pyc +0 -0
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- venv/lib/python3.10/site-packages/pyarrow/tests/interchange/test_conversion.py +522 -0
ckpts/universal/global_step80/zero/18.post_attention_layernorm.weight/exp_avg.pt
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ckpts/universal/global_step80/zero/18.post_attention_layernorm.weight/exp_avg_sq.pt
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ckpts/universal/global_step80/zero/18.post_attention_layernorm.weight/fp32.pt
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venv/lib/python3.10/site-packages/pyarrow/tests/arrow_16597.py
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# Licensed to the Apache Software Foundation (ASF) under one
|
2 |
+
# or more contributor license agreements. See the NOTICE file
|
3 |
+
# distributed with this work for additional information
|
4 |
+
# regarding copyright ownership. The ASF licenses this file
|
5 |
+
# to you under the Apache License, Version 2.0 (the
|
6 |
+
# "License"); you may not use this file except in compliance
|
7 |
+
# with the License. You may obtain a copy of the License at
|
8 |
+
#
|
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+
# http://www.apache.org/licenses/LICENSE-2.0
|
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+
#
|
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+
# Unless required by applicable law or agreed to in writing,
|
12 |
+
# software distributed under the License is distributed on an
|
13 |
+
# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
|
14 |
+
# KIND, either express or implied. See the License for the
|
15 |
+
# specific language governing permissions and limitations
|
16 |
+
# under the License.
|
17 |
+
|
18 |
+
# This file is called from a test in test_flight.py.
|
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import time
|
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|
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import pyarrow as pa
|
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import pyarrow.flight as flight
|
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+
|
24 |
+
|
25 |
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class Server(flight.FlightServerBase):
|
26 |
+
def do_put(self, context, descriptor, reader, writer):
|
27 |
+
time.sleep(1)
|
28 |
+
raise flight.FlightCancelledError("")
|
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+
|
30 |
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|
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if __name__ == "__main__":
|
32 |
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server = Server("grpc://localhost:0")
|
33 |
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client = flight.connect(f"grpc://localhost:{server.port}")
|
34 |
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schema = pa.schema([])
|
35 |
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writer, reader = client.do_put(
|
36 |
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flight.FlightDescriptor.for_command(b""), schema)
|
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writer.done_writing()
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venv/lib/python3.10/site-packages/pyarrow/tests/extensions.pyx
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# Licensed to the Apache Software Foundation (ASF) under one
|
2 |
+
# or more contributor license agreements. See the NOTICE file
|
3 |
+
# distributed with this work for additional information
|
4 |
+
# regarding copyright ownership. The ASF licenses this file
|
5 |
+
# to you under the Apache License, Version 2.0 (the
|
6 |
+
# "License"); you may not use this file except in compliance
|
7 |
+
# with the License. You may obtain a copy of the License at
|
8 |
+
#
|
9 |
+
# http://www.apache.org/licenses/LICENSE-2.0
|
10 |
+
#
|
11 |
+
# Unless required by applicable law or agreed to in writing,
|
12 |
+
# software distributed under the License is distributed on an
|
13 |
+
# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
|
14 |
+
# KIND, either express or implied. See the License for the
|
15 |
+
# specific language governing permissions and limitations
|
16 |
+
# under the License.
|
17 |
+
|
18 |
+
# distutils: language=c++
|
19 |
+
# cython: language_level = 3
|
20 |
+
|
21 |
+
from pyarrow.lib cimport *
|
22 |
+
|
23 |
+
cdef extern from * namespace "arrow::py" nogil:
|
24 |
+
"""
|
25 |
+
#include "arrow/status.h"
|
26 |
+
#include "arrow/extension_type.h"
|
27 |
+
#include "arrow/ipc/json_simple.h"
|
28 |
+
|
29 |
+
namespace arrow {
|
30 |
+
namespace py {
|
31 |
+
|
32 |
+
class UuidArray : public ExtensionArray {
|
33 |
+
public:
|
34 |
+
using ExtensionArray::ExtensionArray;
|
35 |
+
};
|
36 |
+
|
37 |
+
class UuidType : public ExtensionType {
|
38 |
+
public:
|
39 |
+
UuidType() : ExtensionType(fixed_size_binary(16)) {}
|
40 |
+
std::string extension_name() const override { return "uuid"; }
|
41 |
+
|
42 |
+
bool ExtensionEquals(const ExtensionType& other) const override {
|
43 |
+
return other.extension_name() == this->extension_name();
|
44 |
+
}
|
45 |
+
|
46 |
+
std::shared_ptr<Array> MakeArray(std::shared_ptr<ArrayData> data) const override {
|
47 |
+
return std::make_shared<ExtensionArray>(data);
|
48 |
+
}
|
49 |
+
|
50 |
+
Result<std::shared_ptr<DataType>> Deserialize(
|
51 |
+
std::shared_ptr<DataType> storage_type,
|
52 |
+
const std::string& serialized) const override {
|
53 |
+
return std::make_shared<UuidType>();
|
54 |
+
}
|
55 |
+
|
56 |
+
std::string Serialize() const override { return ""; }
|
57 |
+
};
|
58 |
+
|
59 |
+
|
60 |
+
std::shared_ptr<DataType> MakeUuidType() {
|
61 |
+
return std::make_shared<UuidType>();
|
62 |
+
}
|
63 |
+
|
64 |
+
std::shared_ptr<Array> MakeUuidArray() {
|
65 |
+
auto uuid_type = MakeUuidType();
|
66 |
+
auto json = "[\\"abcdefghijklmno0\\", \\"0onmlkjihgfedcba\\"]";
|
67 |
+
auto result = ipc::internal::json::ArrayFromJSON(fixed_size_binary(16), json);
|
68 |
+
return ExtensionType::WrapArray(uuid_type, result.ValueOrDie());
|
69 |
+
}
|
70 |
+
|
71 |
+
std::once_flag uuid_registered;
|
72 |
+
|
73 |
+
static bool RegisterUuidType() {
|
74 |
+
std::call_once(uuid_registered, RegisterExtensionType,
|
75 |
+
std::make_shared<UuidType>());
|
76 |
+
return true;
|
77 |
+
}
|
78 |
+
|
79 |
+
static auto uuid_type_registered = RegisterUuidType();
|
80 |
+
|
81 |
+
} // namespace py
|
82 |
+
} // namespace arrow
|
83 |
+
"""
|
84 |
+
|
85 |
+
cdef shared_ptr[CDataType] CMakeUuidType" arrow::py::MakeUuidType"()
|
86 |
+
cdef shared_ptr[CArray] CMakeUuidArray" arrow::py::MakeUuidArray"()
|
87 |
+
|
88 |
+
|
89 |
+
def _make_uuid_type():
|
90 |
+
return pyarrow_wrap_data_type(CMakeUuidType())
|
91 |
+
|
92 |
+
|
93 |
+
def _make_uuid_array():
|
94 |
+
return pyarrow_wrap_array(CMakeUuidArray())
|
venv/lib/python3.10/site-packages/pyarrow/tests/interchange/__init__.py
ADDED
@@ -0,0 +1,16 @@
|
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|
1 |
+
# Licensed to the Apache Software Foundation (ASF) under one
|
2 |
+
# or more contributor license agreements. See the NOTICE file
|
3 |
+
# distributed with this work for additional information
|
4 |
+
# regarding copyright ownership. The ASF licenses this file
|
5 |
+
# to you under the Apache License, Version 2.0 (the
|
6 |
+
# "License"); you may not use this file except in compliance
|
7 |
+
# with the License. You may obtain a copy of the License at
|
8 |
+
#
|
9 |
+
# http://www.apache.org/licenses/LICENSE-2.0
|
10 |
+
#
|
11 |
+
# Unless required by applicable law or agreed to in writing,
|
12 |
+
# software distributed under the License is distributed on an
|
13 |
+
# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
|
14 |
+
# KIND, either express or implied. See the License for the
|
15 |
+
# specific language governing permissions and limitations
|
16 |
+
# under the License.
|
venv/lib/python3.10/site-packages/pyarrow/tests/interchange/__pycache__/__init__.cpython-310.pyc
ADDED
Binary file (193 Bytes). View file
|
|
venv/lib/python3.10/site-packages/pyarrow/tests/interchange/__pycache__/test_conversion.cpython-310.pyc
ADDED
Binary file (13.2 kB). View file
|
|
venv/lib/python3.10/site-packages/pyarrow/tests/interchange/__pycache__/test_interchange_spec.cpython-310.pyc
ADDED
Binary file (7.38 kB). View file
|
|
venv/lib/python3.10/site-packages/pyarrow/tests/interchange/test_conversion.py
ADDED
@@ -0,0 +1,522 @@
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|
|
|
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|
|
|
|
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|
|
|
|
|
|
|
|
|
1 |
+
# Licensed to the Apache Software Foundation (ASF) under one
|
2 |
+
# or more contributor license agreements. See the NOTICE file
|
3 |
+
# distributed with this work for additional information
|
4 |
+
# regarding copyright ownership. The ASF licenses this file
|
5 |
+
# to you under the Apache License, Version 2.0 (the
|
6 |
+
# "License"); you may not use this file except in compliance
|
7 |
+
# with the License. You may obtain a copy of the License at
|
8 |
+
#
|
9 |
+
# http://www.apache.org/licenses/LICENSE-2.0
|
10 |
+
#
|
11 |
+
# Unless required by applicable law or agreed to in writing,
|
12 |
+
# software distributed under the License is distributed on an
|
13 |
+
# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
|
14 |
+
# KIND, either express or implied. See the License for the
|
15 |
+
# specific language governing permissions and limitations
|
16 |
+
# under the License.
|
17 |
+
|
18 |
+
from datetime import datetime as dt
|
19 |
+
import numpy as np
|
20 |
+
import pyarrow as pa
|
21 |
+
from pyarrow.vendored.version import Version
|
22 |
+
import pytest
|
23 |
+
|
24 |
+
import pyarrow.interchange as pi
|
25 |
+
from pyarrow.interchange.column import (
|
26 |
+
_PyArrowColumn,
|
27 |
+
ColumnNullType,
|
28 |
+
DtypeKind,
|
29 |
+
)
|
30 |
+
from pyarrow.interchange.from_dataframe import _from_dataframe
|
31 |
+
|
32 |
+
try:
|
33 |
+
import pandas as pd
|
34 |
+
# import pandas.testing as tm
|
35 |
+
except ImportError:
|
36 |
+
pass
|
37 |
+
|
38 |
+
|
39 |
+
@pytest.mark.parametrize("unit", ['s', 'ms', 'us', 'ns'])
|
40 |
+
@pytest.mark.parametrize("tz", ['', 'America/New_York', '+07:30', '-04:30'])
|
41 |
+
def test_datetime(unit, tz):
|
42 |
+
dt_arr = [dt(2007, 7, 13), dt(2007, 7, 14), None]
|
43 |
+
table = pa.table({"A": pa.array(dt_arr, type=pa.timestamp(unit, tz=tz))})
|
44 |
+
col = table.__dataframe__().get_column_by_name("A")
|
45 |
+
|
46 |
+
assert col.size() == 3
|
47 |
+
assert col.offset == 0
|
48 |
+
assert col.null_count == 1
|
49 |
+
assert col.dtype[0] == DtypeKind.DATETIME
|
50 |
+
assert col.describe_null == (ColumnNullType.USE_BITMASK, 0)
|
51 |
+
|
52 |
+
|
53 |
+
@pytest.mark.parametrize(
|
54 |
+
["test_data", "kind"],
|
55 |
+
[
|
56 |
+
(["foo", "bar"], 21),
|
57 |
+
([1.5, 2.5, 3.5], 2),
|
58 |
+
([1, 2, 3, 4], 0),
|
59 |
+
],
|
60 |
+
)
|
61 |
+
def test_array_to_pyarrowcolumn(test_data, kind):
|
62 |
+
arr = pa.array(test_data)
|
63 |
+
arr_column = _PyArrowColumn(arr)
|
64 |
+
|
65 |
+
assert arr_column._col == arr
|
66 |
+
assert arr_column.size() == len(test_data)
|
67 |
+
assert arr_column.dtype[0] == kind
|
68 |
+
assert arr_column.num_chunks() == 1
|
69 |
+
assert arr_column.null_count == 0
|
70 |
+
assert arr_column.get_buffers()["validity"] is None
|
71 |
+
assert len(list(arr_column.get_chunks())) == 1
|
72 |
+
|
73 |
+
for chunk in arr_column.get_chunks():
|
74 |
+
assert chunk == arr_column
|
75 |
+
|
76 |
+
|
77 |
+
def test_offset_of_sliced_array():
|
78 |
+
arr = pa.array([1, 2, 3, 4])
|
79 |
+
arr_sliced = arr.slice(2, 2)
|
80 |
+
|
81 |
+
table = pa.table([arr], names=["arr"])
|
82 |
+
table_sliced = pa.table([arr_sliced], names=["arr_sliced"])
|
83 |
+
|
84 |
+
col = table_sliced.__dataframe__().get_column(0)
|
85 |
+
assert col.offset == 2
|
86 |
+
|
87 |
+
result = _from_dataframe(table_sliced.__dataframe__())
|
88 |
+
assert table_sliced.equals(result)
|
89 |
+
assert not table.equals(result)
|
90 |
+
|
91 |
+
# pandas hardcodes offset to 0:
|
92 |
+
# https://github.com/pandas-dev/pandas/blob/5c66e65d7b9fef47ccb585ce2fd0b3ea18dc82ea/pandas/core/interchange/from_dataframe.py#L247
|
93 |
+
# so conversion to pandas can't be tested currently
|
94 |
+
|
95 |
+
# df = pandas_from_dataframe(table)
|
96 |
+
# df_sliced = pandas_from_dataframe(table_sliced)
|
97 |
+
|
98 |
+
# tm.assert_series_equal(df["arr"][2:4], df_sliced["arr_sliced"],
|
99 |
+
# check_index=False, check_names=False)
|
100 |
+
|
101 |
+
|
102 |
+
@pytest.mark.pandas
|
103 |
+
@pytest.mark.parametrize(
|
104 |
+
"uint", [pa.uint8(), pa.uint16(), pa.uint32()]
|
105 |
+
)
|
106 |
+
@pytest.mark.parametrize(
|
107 |
+
"int", [pa.int8(), pa.int16(), pa.int32(), pa.int64()]
|
108 |
+
)
|
109 |
+
@pytest.mark.parametrize(
|
110 |
+
"float, np_float", [
|
111 |
+
# (pa.float16(), np.float16), #not supported by pandas
|
112 |
+
(pa.float32(), np.float32),
|
113 |
+
(pa.float64(), np.float64)
|
114 |
+
]
|
115 |
+
)
|
116 |
+
def test_pandas_roundtrip(uint, int, float, np_float):
|
117 |
+
if Version(pd.__version__) < Version("1.5.0"):
|
118 |
+
pytest.skip("__dataframe__ added to pandas in 1.5.0")
|
119 |
+
|
120 |
+
arr = [1, 2, 3]
|
121 |
+
table = pa.table(
|
122 |
+
{
|
123 |
+
"a": pa.array(arr, type=uint),
|
124 |
+
"b": pa.array(arr, type=int),
|
125 |
+
"c": pa.array(np.array(arr, dtype=np_float), type=float),
|
126 |
+
"d": [True, False, True],
|
127 |
+
}
|
128 |
+
)
|
129 |
+
from pandas.api.interchange import (
|
130 |
+
from_dataframe as pandas_from_dataframe
|
131 |
+
)
|
132 |
+
pandas_df = pandas_from_dataframe(table)
|
133 |
+
result = pi.from_dataframe(pandas_df)
|
134 |
+
assert table.equals(result)
|
135 |
+
|
136 |
+
table_protocol = table.__dataframe__()
|
137 |
+
result_protocol = result.__dataframe__()
|
138 |
+
|
139 |
+
assert table_protocol.num_columns() == result_protocol.num_columns()
|
140 |
+
assert table_protocol.num_rows() == result_protocol.num_rows()
|
141 |
+
assert table_protocol.num_chunks() == result_protocol.num_chunks()
|
142 |
+
assert table_protocol.column_names() == result_protocol.column_names()
|
143 |
+
|
144 |
+
|
145 |
+
@pytest.mark.pandas
|
146 |
+
def test_pandas_roundtrip_string():
|
147 |
+
# See https://github.com/pandas-dev/pandas/issues/50554
|
148 |
+
if Version(pd.__version__) < Version("1.6"):
|
149 |
+
pytest.skip("Column.size() bug in pandas")
|
150 |
+
|
151 |
+
arr = ["a", "", "c"]
|
152 |
+
table = pa.table({"a": pa.array(arr)})
|
153 |
+
|
154 |
+
from pandas.api.interchange import (
|
155 |
+
from_dataframe as pandas_from_dataframe
|
156 |
+
)
|
157 |
+
|
158 |
+
pandas_df = pandas_from_dataframe(table)
|
159 |
+
result = pi.from_dataframe(pandas_df)
|
160 |
+
|
161 |
+
assert result["a"].to_pylist() == table["a"].to_pylist()
|
162 |
+
assert pa.types.is_string(table["a"].type)
|
163 |
+
assert pa.types.is_large_string(result["a"].type)
|
164 |
+
|
165 |
+
table_protocol = table.__dataframe__()
|
166 |
+
result_protocol = result.__dataframe__()
|
167 |
+
|
168 |
+
assert table_protocol.num_columns() == result_protocol.num_columns()
|
169 |
+
assert table_protocol.num_rows() == result_protocol.num_rows()
|
170 |
+
assert table_protocol.num_chunks() == result_protocol.num_chunks()
|
171 |
+
assert table_protocol.column_names() == result_protocol.column_names()
|
172 |
+
|
173 |
+
|
174 |
+
@pytest.mark.pandas
|
175 |
+
def test_pandas_roundtrip_large_string():
|
176 |
+
# See https://github.com/pandas-dev/pandas/issues/50554
|
177 |
+
if Version(pd.__version__) < Version("1.6"):
|
178 |
+
pytest.skip("Column.size() bug in pandas")
|
179 |
+
|
180 |
+
arr = ["a", "", "c"]
|
181 |
+
table = pa.table({"a_large": pa.array(arr, type=pa.large_string())})
|
182 |
+
|
183 |
+
from pandas.api.interchange import (
|
184 |
+
from_dataframe as pandas_from_dataframe
|
185 |
+
)
|
186 |
+
|
187 |
+
if Version(pd.__version__) >= Version("2.0.1"):
|
188 |
+
pandas_df = pandas_from_dataframe(table)
|
189 |
+
result = pi.from_dataframe(pandas_df)
|
190 |
+
|
191 |
+
assert result["a_large"].to_pylist() == table["a_large"].to_pylist()
|
192 |
+
assert pa.types.is_large_string(table["a_large"].type)
|
193 |
+
assert pa.types.is_large_string(result["a_large"].type)
|
194 |
+
|
195 |
+
table_protocol = table.__dataframe__()
|
196 |
+
result_protocol = result.__dataframe__()
|
197 |
+
|
198 |
+
assert table_protocol.num_columns() == result_protocol.num_columns()
|
199 |
+
assert table_protocol.num_rows() == result_protocol.num_rows()
|
200 |
+
assert table_protocol.num_chunks() == result_protocol.num_chunks()
|
201 |
+
assert table_protocol.column_names() == result_protocol.column_names()
|
202 |
+
|
203 |
+
else:
|
204 |
+
# large string not supported by pandas implementation for
|
205 |
+
# older versions of pandas
|
206 |
+
# https://github.com/pandas-dev/pandas/issues/52795
|
207 |
+
with pytest.raises(AssertionError):
|
208 |
+
pandas_from_dataframe(table)
|
209 |
+
|
210 |
+
|
211 |
+
@pytest.mark.pandas
|
212 |
+
def test_pandas_roundtrip_string_with_missing():
|
213 |
+
# See https://github.com/pandas-dev/pandas/issues/50554
|
214 |
+
if Version(pd.__version__) < Version("1.6"):
|
215 |
+
pytest.skip("Column.size() bug in pandas")
|
216 |
+
|
217 |
+
arr = ["a", "", "c", None]
|
218 |
+
table = pa.table({"a": pa.array(arr),
|
219 |
+
"a_large": pa.array(arr, type=pa.large_string())})
|
220 |
+
|
221 |
+
from pandas.api.interchange import (
|
222 |
+
from_dataframe as pandas_from_dataframe
|
223 |
+
)
|
224 |
+
|
225 |
+
if Version(pd.__version__) >= Version("2.0.2"):
|
226 |
+
pandas_df = pandas_from_dataframe(table)
|
227 |
+
result = pi.from_dataframe(pandas_df)
|
228 |
+
|
229 |
+
assert result["a"].to_pylist() == table["a"].to_pylist()
|
230 |
+
assert pa.types.is_string(table["a"].type)
|
231 |
+
assert pa.types.is_large_string(result["a"].type)
|
232 |
+
|
233 |
+
assert result["a_large"].to_pylist() == table["a_large"].to_pylist()
|
234 |
+
assert pa.types.is_large_string(table["a_large"].type)
|
235 |
+
assert pa.types.is_large_string(result["a_large"].type)
|
236 |
+
else:
|
237 |
+
# older versions of pandas do not have bitmask support
|
238 |
+
# https://github.com/pandas-dev/pandas/issues/49888
|
239 |
+
with pytest.raises(NotImplementedError):
|
240 |
+
pandas_from_dataframe(table)
|
241 |
+
|
242 |
+
|
243 |
+
@pytest.mark.pandas
|
244 |
+
def test_pandas_roundtrip_categorical():
|
245 |
+
if Version(pd.__version__) < Version("2.0.2"):
|
246 |
+
pytest.skip("Bitmasks not supported in pandas interchange implementation")
|
247 |
+
|
248 |
+
arr = ["Mon", "Tue", "Mon", "Wed", "Mon", "Thu", "Fri", "Sat", None]
|
249 |
+
table = pa.table(
|
250 |
+
{"weekday": pa.array(arr).dictionary_encode()}
|
251 |
+
)
|
252 |
+
|
253 |
+
from pandas.api.interchange import (
|
254 |
+
from_dataframe as pandas_from_dataframe
|
255 |
+
)
|
256 |
+
pandas_df = pandas_from_dataframe(table)
|
257 |
+
result = pi.from_dataframe(pandas_df)
|
258 |
+
|
259 |
+
assert result["weekday"].to_pylist() == table["weekday"].to_pylist()
|
260 |
+
assert pa.types.is_dictionary(table["weekday"].type)
|
261 |
+
assert pa.types.is_dictionary(result["weekday"].type)
|
262 |
+
assert pa.types.is_string(table["weekday"].chunk(0).dictionary.type)
|
263 |
+
assert pa.types.is_large_string(result["weekday"].chunk(0).dictionary.type)
|
264 |
+
assert pa.types.is_int32(table["weekday"].chunk(0).indices.type)
|
265 |
+
assert pa.types.is_int8(result["weekday"].chunk(0).indices.type)
|
266 |
+
|
267 |
+
table_protocol = table.__dataframe__()
|
268 |
+
result_protocol = result.__dataframe__()
|
269 |
+
|
270 |
+
assert table_protocol.num_columns() == result_protocol.num_columns()
|
271 |
+
assert table_protocol.num_rows() == result_protocol.num_rows()
|
272 |
+
assert table_protocol.num_chunks() == result_protocol.num_chunks()
|
273 |
+
assert table_protocol.column_names() == result_protocol.column_names()
|
274 |
+
|
275 |
+
col_table = table_protocol.get_column(0)
|
276 |
+
col_result = result_protocol.get_column(0)
|
277 |
+
|
278 |
+
assert col_result.dtype[0] == DtypeKind.CATEGORICAL
|
279 |
+
assert col_result.dtype[0] == col_table.dtype[0]
|
280 |
+
assert col_result.size() == col_table.size()
|
281 |
+
assert col_result.offset == col_table.offset
|
282 |
+
|
283 |
+
desc_cat_table = col_result.describe_categorical
|
284 |
+
desc_cat_result = col_result.describe_categorical
|
285 |
+
|
286 |
+
assert desc_cat_table["is_ordered"] == desc_cat_result["is_ordered"]
|
287 |
+
assert desc_cat_table["is_dictionary"] == desc_cat_result["is_dictionary"]
|
288 |
+
assert isinstance(desc_cat_result["categories"]._col, pa.Array)
|
289 |
+
|
290 |
+
|
291 |
+
@pytest.mark.pandas
|
292 |
+
@pytest.mark.parametrize("unit", ['s', 'ms', 'us', 'ns'])
|
293 |
+
def test_pandas_roundtrip_datetime(unit):
|
294 |
+
if Version(pd.__version__) < Version("1.5.0"):
|
295 |
+
pytest.skip("__dataframe__ added to pandas in 1.5.0")
|
296 |
+
from datetime import datetime as dt
|
297 |
+
|
298 |
+
# timezones not included as they are not yet supported in
|
299 |
+
# the pandas implementation
|
300 |
+
dt_arr = [dt(2007, 7, 13), dt(2007, 7, 14), dt(2007, 7, 15)]
|
301 |
+
table = pa.table({"a": pa.array(dt_arr, type=pa.timestamp(unit))})
|
302 |
+
|
303 |
+
if Version(pd.__version__) < Version("1.6"):
|
304 |
+
# pandas < 2.0 always creates datetime64 in "ns"
|
305 |
+
# resolution
|
306 |
+
expected = pa.table({"a": pa.array(dt_arr, type=pa.timestamp('ns'))})
|
307 |
+
else:
|
308 |
+
expected = table
|
309 |
+
|
310 |
+
from pandas.api.interchange import (
|
311 |
+
from_dataframe as pandas_from_dataframe
|
312 |
+
)
|
313 |
+
pandas_df = pandas_from_dataframe(table)
|
314 |
+
result = pi.from_dataframe(pandas_df)
|
315 |
+
|
316 |
+
assert expected.equals(result)
|
317 |
+
|
318 |
+
expected_protocol = expected.__dataframe__()
|
319 |
+
result_protocol = result.__dataframe__()
|
320 |
+
|
321 |
+
assert expected_protocol.num_columns() == result_protocol.num_columns()
|
322 |
+
assert expected_protocol.num_rows() == result_protocol.num_rows()
|
323 |
+
assert expected_protocol.num_chunks() == result_protocol.num_chunks()
|
324 |
+
assert expected_protocol.column_names() == result_protocol.column_names()
|
325 |
+
|
326 |
+
|
327 |
+
@pytest.mark.pandas
|
328 |
+
@pytest.mark.parametrize(
|
329 |
+
"np_float", [np.float32, np.float64]
|
330 |
+
)
|
331 |
+
def test_pandas_to_pyarrow_with_missing(np_float):
|
332 |
+
if Version(pd.__version__) < Version("1.5.0"):
|
333 |
+
pytest.skip("__dataframe__ added to pandas in 1.5.0")
|
334 |
+
|
335 |
+
np_array = np.array([0, np.nan, 2], dtype=np_float)
|
336 |
+
datetime_array = [None, dt(2007, 7, 14), dt(2007, 7, 15)]
|
337 |
+
df = pd.DataFrame({
|
338 |
+
"a": np_array, # float, ColumnNullType.USE_NAN
|
339 |
+
"dt": datetime_array # ColumnNullType.USE_SENTINEL
|
340 |
+
})
|
341 |
+
expected = pa.table({
|
342 |
+
"a": pa.array(np_array, from_pandas=True),
|
343 |
+
"dt": pa.array(datetime_array, type=pa.timestamp("ns"))
|
344 |
+
})
|
345 |
+
result = pi.from_dataframe(df)
|
346 |
+
|
347 |
+
assert result.equals(expected)
|
348 |
+
|
349 |
+
|
350 |
+
@pytest.mark.pandas
|
351 |
+
def test_pandas_to_pyarrow_float16_with_missing():
|
352 |
+
if Version(pd.__version__) < Version("1.5.0"):
|
353 |
+
pytest.skip("__dataframe__ added to pandas in 1.5.0")
|
354 |
+
|
355 |
+
# np.float16 errors if ps.is_nan is used
|
356 |
+
# pyarrow.lib.ArrowNotImplementedError: Function 'is_nan' has no kernel
|
357 |
+
# matching input types (halffloat)
|
358 |
+
np_array = np.array([0, np.nan, 2], dtype=np.float16)
|
359 |
+
df = pd.DataFrame({"a": np_array})
|
360 |
+
|
361 |
+
with pytest.raises(NotImplementedError):
|
362 |
+
pi.from_dataframe(df)
|
363 |
+
|
364 |
+
|
365 |
+
@pytest.mark.parametrize(
|
366 |
+
"uint", [pa.uint8(), pa.uint16(), pa.uint32()]
|
367 |
+
)
|
368 |
+
@pytest.mark.parametrize(
|
369 |
+
"int", [pa.int8(), pa.int16(), pa.int32(), pa.int64()]
|
370 |
+
)
|
371 |
+
@pytest.mark.parametrize(
|
372 |
+
"float, np_float", [
|
373 |
+
(pa.float16(), np.float16),
|
374 |
+
(pa.float32(), np.float32),
|
375 |
+
(pa.float64(), np.float64)
|
376 |
+
]
|
377 |
+
)
|
378 |
+
@pytest.mark.parametrize("unit", ['s', 'ms', 'us', 'ns'])
|
379 |
+
@pytest.mark.parametrize("tz", ['America/New_York', '+07:30', '-04:30'])
|
380 |
+
@pytest.mark.parametrize("offset, length", [(0, 3), (0, 2), (1, 2), (2, 1)])
|
381 |
+
def test_pyarrow_roundtrip(uint, int, float, np_float,
|
382 |
+
unit, tz, offset, length):
|
383 |
+
|
384 |
+
from datetime import datetime as dt
|
385 |
+
arr = [1, 2, None]
|
386 |
+
dt_arr = [dt(2007, 7, 13), None, dt(2007, 7, 15)]
|
387 |
+
|
388 |
+
table = pa.table(
|
389 |
+
{
|
390 |
+
"a": pa.array(arr, type=uint),
|
391 |
+
"b": pa.array(arr, type=int),
|
392 |
+
"c": pa.array(np.array(arr, dtype=np_float),
|
393 |
+
type=float, from_pandas=True),
|
394 |
+
"d": [True, False, True],
|
395 |
+
"e": [True, False, None],
|
396 |
+
"f": ["a", None, "c"],
|
397 |
+
"g": pa.array(dt_arr, type=pa.timestamp(unit, tz=tz))
|
398 |
+
}
|
399 |
+
)
|
400 |
+
table = table.slice(offset, length)
|
401 |
+
result = _from_dataframe(table.__dataframe__())
|
402 |
+
|
403 |
+
assert table.equals(result)
|
404 |
+
|
405 |
+
table_protocol = table.__dataframe__()
|
406 |
+
result_protocol = result.__dataframe__()
|
407 |
+
|
408 |
+
assert table_protocol.num_columns() == result_protocol.num_columns()
|
409 |
+
assert table_protocol.num_rows() == result_protocol.num_rows()
|
410 |
+
assert table_protocol.num_chunks() == result_protocol.num_chunks()
|
411 |
+
assert table_protocol.column_names() == result_protocol.column_names()
|
412 |
+
|
413 |
+
|
414 |
+
@pytest.mark.parametrize("offset, length", [(0, 10), (0, 2), (7, 3), (2, 1)])
|
415 |
+
def test_pyarrow_roundtrip_categorical(offset, length):
|
416 |
+
arr = ["Mon", "Tue", "Mon", "Wed", "Mon", "Thu", "Fri", None, "Sun"]
|
417 |
+
table = pa.table(
|
418 |
+
{"weekday": pa.array(arr).dictionary_encode()}
|
419 |
+
)
|
420 |
+
table = table.slice(offset, length)
|
421 |
+
result = _from_dataframe(table.__dataframe__())
|
422 |
+
|
423 |
+
assert table.equals(result)
|
424 |
+
|
425 |
+
table_protocol = table.__dataframe__()
|
426 |
+
result_protocol = result.__dataframe__()
|
427 |
+
|
428 |
+
assert table_protocol.num_columns() == result_protocol.num_columns()
|
429 |
+
assert table_protocol.num_rows() == result_protocol.num_rows()
|
430 |
+
assert table_protocol.num_chunks() == result_protocol.num_chunks()
|
431 |
+
assert table_protocol.column_names() == result_protocol.column_names()
|
432 |
+
|
433 |
+
col_table = table_protocol.get_column(0)
|
434 |
+
col_result = result_protocol.get_column(0)
|
435 |
+
|
436 |
+
assert col_result.dtype[0] == DtypeKind.CATEGORICAL
|
437 |
+
assert col_result.dtype[0] == col_table.dtype[0]
|
438 |
+
assert col_result.size() == col_table.size()
|
439 |
+
assert col_result.offset == col_table.offset
|
440 |
+
|
441 |
+
desc_cat_table = col_table.describe_categorical
|
442 |
+
desc_cat_result = col_result.describe_categorical
|
443 |
+
|
444 |
+
assert desc_cat_table["is_ordered"] == desc_cat_result["is_ordered"]
|
445 |
+
assert desc_cat_table["is_dictionary"] == desc_cat_result["is_dictionary"]
|
446 |
+
assert isinstance(desc_cat_result["categories"]._col, pa.Array)
|
447 |
+
|
448 |
+
|
449 |
+
@pytest.mark.large_memory
|
450 |
+
def test_pyarrow_roundtrip_large_string():
|
451 |
+
|
452 |
+
data = np.array([b'x'*1024]*(3*1024**2), dtype='object') # 3GB bytes data
|
453 |
+
arr = pa.array(data, type=pa.large_string())
|
454 |
+
table = pa.table([arr], names=["large_string"])
|
455 |
+
|
456 |
+
result = _from_dataframe(table.__dataframe__())
|
457 |
+
col = result.__dataframe__().get_column(0)
|
458 |
+
|
459 |
+
assert col.size() == 3*1024**2
|
460 |
+
assert pa.types.is_large_string(table[0].type)
|
461 |
+
assert pa.types.is_large_string(result[0].type)
|
462 |
+
|
463 |
+
assert table.equals(result)
|
464 |
+
|
465 |
+
|
466 |
+
def test_nan_as_null():
|
467 |
+
table = pa.table({"a": [1, 2, 3, 4]})
|
468 |
+
with pytest.raises(RuntimeError):
|
469 |
+
table.__dataframe__(nan_as_null=True)
|
470 |
+
|
471 |
+
|
472 |
+
@pytest.mark.pandas
|
473 |
+
def test_allow_copy_false():
|
474 |
+
if Version(pd.__version__) < Version("1.5.0"):
|
475 |
+
pytest.skip("__dataframe__ added to pandas in 1.5.0")
|
476 |
+
|
477 |
+
# Test that an error is raised when a copy is needed
|
478 |
+
# to create a bitmask
|
479 |
+
|
480 |
+
df = pd.DataFrame({"a": [0, 1.0, 2.0]})
|
481 |
+
with pytest.raises(RuntimeError):
|
482 |
+
pi.from_dataframe(df, allow_copy=False)
|
483 |
+
|
484 |
+
df = pd.DataFrame({
|
485 |
+
"dt": [None, dt(2007, 7, 14), dt(2007, 7, 15)]
|
486 |
+
})
|
487 |
+
with pytest.raises(RuntimeError):
|
488 |
+
pi.from_dataframe(df, allow_copy=False)
|
489 |
+
|
490 |
+
|
491 |
+
@pytest.mark.pandas
|
492 |
+
def test_allow_copy_false_bool_categorical():
|
493 |
+
if Version(pd.__version__) < Version("1.5.0"):
|
494 |
+
pytest.skip("__dataframe__ added to pandas in 1.5.0")
|
495 |
+
|
496 |
+
# Test that an error is raised for boolean
|
497 |
+
# and categorical dtype (copy is always made)
|
498 |
+
|
499 |
+
df = pd.DataFrame({"a": [None, False, True]})
|
500 |
+
with pytest.raises(RuntimeError):
|
501 |
+
pi.from_dataframe(df, allow_copy=False)
|
502 |
+
|
503 |
+
df = pd.DataFrame({"a": [True, False, True]})
|
504 |
+
with pytest.raises(RuntimeError):
|
505 |
+
pi.from_dataframe(df, allow_copy=False)
|
506 |
+
|
507 |
+
df = pd.DataFrame({"weekday": ["a", "b", None]})
|
508 |
+
df = df.astype("category")
|
509 |
+
with pytest.raises(RuntimeError):
|
510 |
+
pi.from_dataframe(df, allow_copy=False)
|
511 |
+
|
512 |
+
df = pd.DataFrame({"weekday": ["a", "b", "c"]})
|
513 |
+
df = df.astype("category")
|
514 |
+
with pytest.raises(RuntimeError):
|
515 |
+
pi.from_dataframe(df, allow_copy=False)
|
516 |
+
|
517 |
+
|
518 |
+
def test_empty_dataframe():
|
519 |
+
schema = pa.schema([('col1', pa.int8())])
|
520 |
+
df = pa.table([[]], schema=schema)
|
521 |
+
dfi = df.__dataframe__()
|
522 |
+
assert pi.from_dataframe(dfi) == df
|