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ckpts/universal/global_step40/zero/13.mlp.dense_h_to_4h.weight/exp_avg.pt

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+version https://git-lfs.github.com/spec/v1
+oid sha256:603d1addf9b3ceace3d238ec4f98ee3fd2966c42b5099e8ac2d5f3c4e99f9659
+size 33555612

venv/lib/python3.10/site-packages/scipy/optimize/_shgo_lib/_complex.py

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+"""Base classes for low memory simplicial complex structures."""
+import copy
+import logging
+import itertools
+import decimal
+from functools import cache
+
+import numpy
+
+from ._vertex import (VertexCacheField, VertexCacheIndex)
+
+
+class Complex:
+    """
+    Base class for a simplicial complex described as a cache of vertices
+    together with their connections.
+
+    Important methods:
+        Domain triangulation:
+                Complex.triangulate, Complex.split_generation
+        Triangulating arbitrary points (must be traingulable,
+            may exist outside domain):
+                Complex.triangulate(sample_set)
+        Converting another simplicial complex structure data type to the
+            structure used in Complex (ex. OBJ wavefront)
+                Complex.convert(datatype, data)
+
+    Important objects:
+        HC.V: The cache of vertices and their connection
+        HC.H: Storage structure of all vertex groups
+
+    Parameters
+    ----------
+    dim : int
+        Spatial dimensionality of the complex R^dim
+    domain : list of tuples, optional
+        The bounds [x_l, x_u]^dim of the hyperrectangle space
+        ex. The default domain is the hyperrectangle [0, 1]^dim
+        Note: The domain must be convex, non-convex spaces can be cut
+              away from this domain using the non-linear
+              g_cons functions to define any arbitrary domain
+              (these domains may also be disconnected from each other)
+    sfield :
+        A scalar function defined in the associated domain f: R^dim --> R
+    sfield_args : tuple
+        Additional arguments to be passed to `sfield`
+    vfield :
+        A scalar function defined in the associated domain
+                       f: R^dim --> R^m
+                   (for example a gradient function of the scalar field)
+    vfield_args : tuple
+        Additional arguments to be passed to vfield
+    symmetry : None or list
+            Specify if the objective function contains symmetric variables.
+            The search space (and therefore performance) is decreased by up to
+            O(n!) times in the fully symmetric case.
+
+            E.g.  f(x) = (x_1 + x_2 + x_3) + (x_4)**2 + (x_5)**2 + (x_6)**2
+
+            In this equation x_2 and x_3 are symmetric to x_1, while x_5 and
+             x_6 are symmetric to x_4, this can be specified to the solver as:
+
+            symmetry = [0,  # Variable 1
+                        0,  # symmetric to variable 1
+                        0,  # symmetric to variable 1
+                        3,  # Variable 4
+                        3,  # symmetric to variable 4
+                        3,  # symmetric to variable 4
+                        ]
+
+    constraints : dict or sequence of dict, optional
+        Constraints definition.
+        Function(s) ``R**n`` in the form::
+
+            g(x) <= 0 applied as g : R^n -> R^m
+            h(x) == 0 applied as h : R^n -> R^p
+
+        Each constraint is defined in a dictionary with fields:
+
+            type : str
+                Constraint type: 'eq' for equality, 'ineq' for inequality.
+            fun : callable
+                The function defining the constraint.
+            jac : callable, optional
+                The Jacobian of `fun` (only for SLSQP).
+            args : sequence, optional
+                Extra arguments to be passed to the function and Jacobian.
+
+        Equality constraint means that the constraint function result is to
+        be zero whereas inequality means that it is to be
+        non-negative.constraints : dict or sequence of dict, optional
+        Constraints definition.
+        Function(s) ``R**n`` in the form::
+
+            g(x) <= 0 applied as g : R^n -> R^m
+            h(x) == 0 applied as h : R^n -> R^p
+
+        Each constraint is defined in a dictionary with fields:
+
+            type : str
+                Constraint type: 'eq' for equality, 'ineq' for inequality.
+            fun : callable
+                The function defining the constraint.
+            jac : callable, optional
+                The Jacobian of `fun` (unused).
+            args : sequence, optional
+                Extra arguments to be passed to the function and Jacobian.
+
+        Equality constraint means that the constraint function result is to
+        be zero whereas inequality means that it is to be non-negative.
+
+    workers : int  optional
+        Uses `multiprocessing.Pool <multiprocessing>`) to compute the field
+         functions in parallel.
+    """
+    def __init__(self, dim, domain=None, sfield=None, sfield_args=(),
+                 symmetry=None, constraints=None, workers=1):
+        self.dim = dim
+
+        # Domains
+        self.domain = domain
+        if domain is None:
+            self.bounds = [(0.0, 1.0), ] * dim
+        else:
+            self.bounds = domain
+        self.symmetry = symmetry
+        #      here in init to avoid if checks
+
+        # Field functions
+        self.sfield = sfield
+        self.sfield_args = sfield_args
+
+        # Process constraints
+        # Constraints
+        # Process constraint dict sequence:
+        if constraints is not None:
+            self.min_cons = constraints
+            self.g_cons = []
+            self.g_args = []
+            if not isinstance(constraints, (tuple, list)):
+                constraints = (constraints,)
+
+            for cons in constraints:
+                if cons['type'] in ('ineq'):
+                    self.g_cons.append(cons['fun'])
+                    try:
+                        self.g_args.append(cons['args'])
+                    except KeyError:
+                        self.g_args.append(())
+            self.g_cons = tuple(self.g_cons)
+            self.g_args = tuple(self.g_args)
+        else:
+            self.g_cons = None
+            self.g_args = None
+
+        # Homology properties
+        self.gen = 0
+        self.perm_cycle = 0
+
+        # Every cell is stored in a list of its generation,
+        # ex. the initial cell is stored in self.H[0]
+        # 1st get new cells are stored in self.H[1] etc.
+        # When a cell is sub-generated it is removed from this list
+
+        self.H = []  # Storage structure of vertex groups
+
+        # Cache of all vertices
+        if (sfield is not None) or (self.g_cons is not None):
+            # Initiate a vertex cache and an associated field cache, note that
+            # the field case is always initiated inside the vertex cache if an
+            # associated field scalar field is defined:
+            if sfield is not None:
+                self.V = VertexCacheField(field=sfield, field_args=sfield_args,
+                                          g_cons=self.g_cons,
+                                          g_cons_args=self.g_args,
+                                          workers=workers)
+            elif self.g_cons is not None:
+                self.V = VertexCacheField(field=sfield, field_args=sfield_args,
+                                          g_cons=self.g_cons,
+                                          g_cons_args=self.g_args,
+                                          workers=workers)
+        else:
+            self.V = VertexCacheIndex()
+
+        self.V_non_symm = []  # List of non-symmetric vertices
+
+    def __call__(self):
+        return self.H
+
+    # %% Triangulation methods
+    def cyclic_product(self, bounds, origin, supremum, centroid=True):
+        """Generate initial triangulation using cyclic product"""
+        # Define current hyperrectangle
+        vot = tuple(origin)
+        vut = tuple(supremum)  # Hyperrectangle supremum
+        self.V[vot]
+        vo = self.V[vot]
+        yield vo.x
+        self.V[vut].connect(self.V[vot])
+        yield vut
+        # Cyclic group approach with second x_l --- x_u operation.
+
+        # These containers store the "lower" and "upper" vertices
+        # corresponding to the origin or supremum of every C2 group.
+        # It has the structure of `dim` times embedded lists each containing
+        # these vertices as the entire complex grows. Bounds[0] has to be done
+        # outside the loops before we have symmetric containers.
+        # NOTE: This means that bounds[0][1] must always exist
+        C0x = [[self.V[vot]]]
+        a_vo = copy.copy(list(origin))
+        a_vo[0] = vut[0]  # Update aN Origin
+        a_vo = self.V[tuple(a_vo)]
+        # self.V[vot].connect(self.V[tuple(a_vo)])
+        self.V[vot].connect(a_vo)
+        yield a_vo.x
+        C1x = [[a_vo]]
+        # C1x = [[self.V[tuple(a_vo)]]]
+        ab_C = []  # Container for a + b operations
+
+        # Loop over remaining bounds
+        for i, x in enumerate(bounds[1:]):
+            # Update lower and upper containers
+            C0x.append([])
+            C1x.append([])
+            # try to access a second bound (if not, C1 is symmetric)
+            try:
+                # Early try so that we don't have to copy the cache before
+                # moving on to next C1/C2: Try to add the operation of a new
+                # C2 product by accessing the upper bound
+                x[1]
+                # Copy lists for iteration
+                cC0x = [x[:] for x in C0x[:i + 1]]
+                cC1x = [x[:] for x in C1x[:i + 1]]
+                for j, (VL, VU) in enumerate(zip(cC0x, cC1x)):
+                    for k, (vl, vu) in enumerate(zip(VL, VU)):
+                        # Build aN vertices for each lower-upper pair in N:
+                        a_vl = list(vl.x)
+                        a_vu = list(vu.x)
+                        a_vl[i + 1] = vut[i + 1]
+                        a_vu[i + 1] = vut[i + 1]
+                        a_vl = self.V[tuple(a_vl)]
+
+                        # Connect vertices in N to corresponding vertices
+                        # in aN:
+                        vl.connect(a_vl)
+
+                        yield a_vl.x
+
+                        a_vu = self.V[tuple(a_vu)]
+                        # Connect vertices in N to corresponding vertices
+                        # in aN:
+                        vu.connect(a_vu)
+
+                        # Connect new vertex pair in aN:
+                        a_vl.connect(a_vu)
+
+                        # Connect lower pair to upper (triangulation
+                        # operation of a + b (two arbitrary operations):
+                        vl.connect(a_vu)
+                        ab_C.append((vl, a_vu))
+
+                        # Update the containers
+                        C0x[i + 1].append(vl)
+                        C0x[i + 1].append(vu)
+                        C1x[i + 1].append(a_vl)
+                        C1x[i + 1].append(a_vu)
+
+                        # Update old containers
+                        C0x[j].append(a_vl)
+                        C1x[j].append(a_vu)
+
+                        # Yield new points
+                        yield a_vu.x
+
+                # Try to connect aN lower source of previous a + b
+                # operation with a aN vertex
+                ab_Cc = copy.copy(ab_C)
+
+                for vp in ab_Cc:
+                    b_v = list(vp[0].x)
+                    ab_v = list(vp[1].x)
+                    b_v[i + 1] = vut[i + 1]
+                    ab_v[i + 1] = vut[i + 1]
+                    b_v = self.V[tuple(b_v)]  # b + vl
+                    ab_v = self.V[tuple(ab_v)]  # b + a_vl
+                    # Note o---o is already connected
+                    vp[0].connect(ab_v)  # o-s
+                    b_v.connect(ab_v)  # s-s
+
+                    # Add new list of cross pairs
+                    ab_C.append((vp[0], ab_v))
+                    ab_C.append((b_v, ab_v))
+
+            except IndexError:
+                cC0x = C0x[i]
+                cC1x = C1x[i]
+                VL, VU = cC0x, cC1x
+                for k, (vl, vu) in enumerate(zip(VL, VU)):
+                    # Build aN vertices for each lower-upper pair in N:
+                    a_vu = list(vu.x)
+                    a_vu[i + 1] = vut[i + 1]
+                    # Connect vertices in N to corresponding vertices
+                    # in aN:
+                    a_vu = self.V[tuple(a_vu)]
+                    # Connect vertices in N to corresponding vertices
+                    # in aN:
+                    vu.connect(a_vu)
+                    # Connect new vertex pair in aN:
+                    # a_vl.connect(a_vu)
+                    # Connect lower pair to upper (triangulation
+                    # operation of a + b (two arbitrary operations):
+                    vl.connect(a_vu)
+                    ab_C.append((vl, a_vu))
+                    C0x[i + 1].append(vu)
+                    C1x[i + 1].append(a_vu)
+                    # Yield new points
+                    a_vu.connect(self.V[vut])
+                    yield a_vu.x
+                    ab_Cc = copy.copy(ab_C)
+                    for vp in ab_Cc:
+                        if vp[1].x[i] == vut[i]:
+                            ab_v = list(vp[1].x)
+                            ab_v[i + 1] = vut[i + 1]
+                            ab_v = self.V[tuple(ab_v)]  # b + a_vl
+                            # Note o---o is already connected
+                            vp[0].connect(ab_v)  # o-s
+
+                            # Add new list of cross pairs
+                            ab_C.append((vp[0], ab_v))
+
+        # Clean class trash
+        try:
+            del C0x
+            del cC0x
+            del C1x
+            del cC1x
+            del ab_C
+            del ab_Cc
+        except UnboundLocalError:
+            pass
+
+        # Extra yield to ensure that the triangulation is completed
+        if centroid:
+            vo = self.V[vot]
+            vs = self.V[vut]
+            # Disconnect the origin and supremum
+            vo.disconnect(vs)
+            # Build centroid
+            vc = self.split_edge(vot, vut)
+            for v in vo.nn:
+                v.connect(vc)
+            yield vc.x
+            return vc.x
+        else:
+            yield vut
+            return vut
+
+    def triangulate(self, n=None, symmetry=None, centroid=True,
+                    printout=False):
+        """
+        Triangulate the initial domain, if n is not None then a limited number
+        of points will be generated
+
+        Parameters
+        ----------
+        n : int, Number of points to be sampled.
+        symmetry :
+
+            Ex. Dictionary/hashtable
+            f(x) = (x_1 + x_2 + x_3) + (x_4)**2 + (x_5)**2 + (x_6)**2
+
+            symmetry = symmetry[0]: 0,  # Variable 1
+                       symmetry[1]: 0,  # symmetric to variable 1
+                       symmetry[2]: 0,  # symmetric to variable 1
+                       symmetry[3]: 3,  # Variable 4
+                       symmetry[4]: 3,  # symmetric to variable 4
+                       symmetry[5]: 3,  # symmetric to variable 4
+                        }
+        centroid : bool, if True add a central point to the hypercube
+        printout : bool, if True print out results
+
+        NOTES:
+        ------
+        Rather than using the combinatorial algorithm to connect vertices we
+        make the following observation:
+
+        The bound pairs are similar a C2 cyclic group and the structure is
+        formed using the cartesian product:
+
+        H = C2 x C2 x C2 ... x C2 (dim times)
+
+        So construct any normal subgroup N and consider H/N first, we connect
+        all vertices within N (ex. N is C2 (the first dimension), then we move
+        to a left coset aN (an operation moving around the defined H/N group by
+        for example moving from the lower bound in C2 (dimension 2) to the
+        higher bound in C2. During this operation connection all the vertices.
+        Now repeat the N connections. Note that these elements can be connected
+        in parallel.
+        """
+        # Inherit class arguments
+        if symmetry is None:
+            symmetry = self.symmetry
+        # Build origin and supremum vectors
+        origin = [i[0] for i in self.bounds]
+        self.origin = origin
+        supremum = [i[1] for i in self.bounds]
+
+        self.supremum = supremum
+
+        if symmetry is None:
+            cbounds = self.bounds
+        else:
+            cbounds = copy.copy(self.bounds)
+            for i, j in enumerate(symmetry):
+                if i is not j:
+                    # pop second entry on second symmetry vars
+                    cbounds[i] = [self.bounds[symmetry[i]][0]]
+                    # Sole (first) entry is the sup value and there is no
+                    # origin:
+                    cbounds[i] = [self.bounds[symmetry[i]][1]]
+                    if (self.bounds[symmetry[i]] is not
+                            self.bounds[symmetry[j]]):
+                        logging.warning(f"Variable {i} was specified as "
+                                        f"symmetetric to variable {j}, however"
+                                        f", the bounds {i} ="
+                                        f" {self.bounds[symmetry[i]]} and {j}"
+                                        f" ="
+                                        f" {self.bounds[symmetry[j]]} do not "
+                                        f"match, the mismatch was ignored in "
+                                        f"the initial triangulation.")
+                        cbounds[i] = self.bounds[symmetry[j]]
+
+        if n is None:
+            # Build generator
+            self.cp = self.cyclic_product(cbounds, origin, supremum, centroid)
+            for i in self.cp:
+                i
+
+            try:
+                self.triangulated_vectors.append((tuple(self.origin),
+                                                  tuple(self.supremum)))
+            except (AttributeError, KeyError):
+                self.triangulated_vectors = [(tuple(self.origin),
+                                              tuple(self.supremum))]
+
+        else:
+            # Check if generator already exists
+            try:
+                self.cp
+            except (AttributeError, KeyError):
+                self.cp = self.cyclic_product(cbounds, origin, supremum,
+                                              centroid)
+
+            try:
+                while len(self.V.cache) < n:
+                    next(self.cp)
+            except StopIteration:
+                try:
+                    self.triangulated_vectors.append((tuple(self.origin),
+                                                      tuple(self.supremum)))
+                except (AttributeError, KeyError):
+                    self.triangulated_vectors = [(tuple(self.origin),
+                                                  tuple(self.supremum))]
+
+        if printout:
+            # for v in self.C0():
+            #   v.print_out()
+            for v in self.V.cache:
+                self.V[v].print_out()
+
+        return
+
+    def refine(self, n=1):
+        if n is None:
+            try:
+                self.triangulated_vectors
+                self.refine_all()
+                return
+            except AttributeError as ae:
+                if str(ae) == "'Complex' object has no attribute " \
+                              "'triangulated_vectors'":
+                    self.triangulate(symmetry=self.symmetry)
+                    return
+                else:
+                    raise
+
+        nt = len(self.V.cache) + n  # Target number of total vertices
+        # In the outer while loop we iterate until we have added an extra `n`
+        # vertices to the complex:
+        while len(self.V.cache) < nt:  # while loop 1
+            try:  # try 1
+                # Try to access triangulated_vectors, this should only be
+                # defined if an initial triangulation has already been
+                # performed:
+                self.triangulated_vectors
+                # Try a usual iteration of the current generator, if it
+                # does not exist or is exhausted then produce a new generator
+                try:  # try 2
+                    next(self.rls)
+                except (AttributeError, StopIteration, KeyError):
+                    vp = self.triangulated_vectors[0]
+                    self.rls = self.refine_local_space(*vp, bounds=self.bounds)
+                    next(self.rls)
+
+            except (AttributeError, KeyError):
+                # If an initial triangulation has not been completed, then
+                # we start/continue the initial triangulation targeting `nt`
+                # vertices, if nt is greater than the initial number of
+                # vertices then the `refine` routine will move back to try 1.
+                self.triangulate(nt, self.symmetry)
+        return
+
+    def refine_all(self, centroids=True):
+        """Refine the entire domain of the current complex."""
+        try:
+            self.triangulated_vectors
+            tvs = copy.copy(self.triangulated_vectors)
+            for i, vp in enumerate(tvs):
+                self.rls = self.refine_local_space(*vp, bounds=self.bounds)
+                for i in self.rls:
+                    i
+        except AttributeError as ae:
+            if str(ae) == "'Complex' object has no attribute " \
+                          "'triangulated_vectors'":
+                self.triangulate(symmetry=self.symmetry, centroid=centroids)
+            else:
+                raise
+
+        # This adds a centroid to every new sub-domain generated and defined
+        # by self.triangulated_vectors, in addition the vertices ! to complete
+        # the triangulation
+        return
+
+    def refine_local_space(self, origin, supremum, bounds, centroid=1):
+        # Copy for later removal
+        origin_c = copy.copy(origin)
+        supremum_c = copy.copy(supremum)
+
+        # Initiate local variables redefined in later inner `for` loop:
+        vl, vu, a_vu = None, None, None
+
+        # Change the vector orientation so that it is only increasing
+        s_ov = list(origin)
+        s_origin = list(origin)
+        s_sv = list(supremum)
+        s_supremum = list(supremum)
+        for i, vi in enumerate(s_origin):
+            if s_ov[i] > s_sv[i]:
+                s_origin[i] = s_sv[i]
+                s_supremum[i] = s_ov[i]
+
+        vot = tuple(s_origin)
+        vut = tuple(s_supremum)  # Hyperrectangle supremum
+
+        vo = self.V[vot]  # initiate if doesn't exist yet
+        vs = self.V[vut]
+        # Start by finding the old centroid of the new space:
+        vco = self.split_edge(vo.x, vs.x)  # Split in case not centroid arg
+
+        # Find set of extreme vertices in current local space
+        sup_set = copy.copy(vco.nn)
+        # Cyclic group approach with second x_l --- x_u operation.
+
+        # These containers store the "lower" and "upper" vertices
+        # corresponding to the origin or supremum of every C2 group.
+        # It has the structure of `dim` times embedded lists each containing
+        # these vertices as the entire complex grows. Bounds[0] has to be done
+        # outside the loops before we have symmetric containers.
+        # NOTE: This means that bounds[0][1] must always exist
+
+        a_vl = copy.copy(list(vot))
+        a_vl[0] = vut[0]  # Update aN Origin
+        if tuple(a_vl) not in self.V.cache:
+            vo = self.V[vot]  # initiate if doesn't exist yet
+            vs = self.V[vut]
+            # Start by finding the old centroid of the new space:
+            vco = self.split_edge(vo.x, vs.x)  # Split in case not centroid arg
+
+            # Find set of extreme vertices in current local space
+            sup_set = copy.copy(vco.nn)
+            a_vl = copy.copy(list(vot))
+            a_vl[0] = vut[0]  # Update aN Origin
+            a_vl = self.V[tuple(a_vl)]
+        else:
+            a_vl = self.V[tuple(a_vl)]
+
+        c_v = self.split_edge(vo.x, a_vl.x)
+        c_v.connect(vco)
+        yield c_v.x
+        Cox = [[vo]]
+        Ccx = [[c_v]]
+        Cux = [[a_vl]]
+        ab_C = []  # Container for a + b operations
+        s_ab_C = []  # Container for symmetric a + b operations
+
+        # Loop over remaining bounds
+        for i, x in enumerate(bounds[1:]):
+            # Update lower and upper containers
+            Cox.append([])
+            Ccx.append([])
+            Cux.append([])
+            # try to access a second bound (if not, C1 is symmetric)
+            try:
+                t_a_vl = list(vot)
+                t_a_vl[i + 1] = vut[i + 1]
+
+                # New: lists are used anyway, so copy all
+                # %%
+                # Copy lists for iteration
+                cCox = [x[:] for x in Cox[:i + 1]]
+                cCcx = [x[:] for x in Ccx[:i + 1]]
+                cCux = [x[:] for x in Cux[:i + 1]]
+                # Try to connect aN lower source of previous a + b
+                # operation with a aN vertex
+                ab_Cc = copy.copy(ab_C)  # NOTE: We append ab_C in the
+                # (VL, VC, VU) for-loop, but we use the copy of the list in the
+                # ab_Cc for-loop.
+                s_ab_Cc = copy.copy(s_ab_C)
+
+                # Early try so that we don't have to copy the cache before
+                # moving on to next C1/C2: Try to add the operation of a new
+                # C2 product by accessing the upper bound
+                if tuple(t_a_vl) not in self.V.cache:
+                    # Raise error to continue symmetric refine
+                    raise IndexError
+                t_a_vu = list(vut)
+                t_a_vu[i + 1] = vut[i + 1]
+                if tuple(t_a_vu) not in self.V.cache:
+                    # Raise error to continue symmetric refine:
+                    raise IndexError
+
+                for vectors in s_ab_Cc:
+                    # s_ab_C.append([c_vc, vl, vu, a_vu])
+                    bc_vc = list(vectors[0].x)
+                    b_vl = list(vectors[1].x)
+                    b_vu = list(vectors[2].x)
+                    ba_vu = list(vectors[3].x)
+
+                    bc_vc[i + 1] = vut[i + 1]
+                    b_vl[i + 1] = vut[i + 1]
+                    b_vu[i + 1] = vut[i + 1]
+                    ba_vu[i + 1] = vut[i + 1]
+
+                    bc_vc = self.V[tuple(bc_vc)]
+                    bc_vc.connect(vco)  # NOTE: Unneeded?
+                    yield bc_vc
+
+                    # Split to centre, call this centre group "d = 0.5*a"
+                    d_bc_vc = self.split_edge(vectors[0].x, bc_vc.x)
+                    d_bc_vc.connect(bc_vc)
+                    d_bc_vc.connect(vectors[1])  # Connect all to centroid
+                    d_bc_vc.connect(vectors[2])  # Connect all to centroid
+                    d_bc_vc.connect(vectors[3])  # Connect all to centroid
+                    yield d_bc_vc.x
+                    b_vl = self.V[tuple(b_vl)]
+                    bc_vc.connect(b_vl)  # Connect aN cross pairs
+                    d_bc_vc.connect(b_vl)  # Connect all to centroid
+
+                    yield b_vl
+                    b_vu = self.V[tuple(b_vu)]
+                    bc_vc.connect(b_vu)  # Connect aN cross pairs
+                    d_bc_vc.connect(b_vu)  # Connect all to centroid
+
+                    b_vl_c = self.split_edge(b_vu.x, b_vl.x)
+                    bc_vc.connect(b_vl_c)
+
+                    yield b_vu
+                    ba_vu = self.V[tuple(ba_vu)]
+                    bc_vc.connect(ba_vu)  # Connect aN cross pairs
+                    d_bc_vc.connect(ba_vu)  # Connect all to centroid
+
+                    # Split the a + b edge of the initial triangulation:
+                    os_v = self.split_edge(vectors[1].x, ba_vu.x)  # o-s
+                    ss_v = self.split_edge(b_vl.x, ba_vu.x)  # s-s
+                    b_vu_c = self.split_edge(b_vu.x, ba_vu.x)
+                    bc_vc.connect(b_vu_c)
+                    yield os_v.x  # often equal to vco, but not always
+                    yield ss_v.x  # often equal to bc_vu, but not always
+                    yield ba_vu
+                    # Split remaining to centre, call this centre group
+                    # "d = 0.5*a"
+                    d_bc_vc = self.split_edge(vectors[0].x, bc_vc.x)
+                    d_bc_vc.connect(vco)  # NOTE: Unneeded?
+                    yield d_bc_vc.x
+                    d_b_vl = self.split_edge(vectors[1].x, b_vl.x)
+                    d_bc_vc.connect(vco)  # NOTE: Unneeded?
+                    d_bc_vc.connect(d_b_vl)  # Connect dN cross pairs
+                    yield d_b_vl.x
+                    d_b_vu = self.split_edge(vectors[2].x, b_vu.x)
+                    d_bc_vc.connect(vco)  # NOTE: Unneeded?
+                    d_bc_vc.connect(d_b_vu)  # Connect dN cross pairs
+                    yield d_b_vu.x
+                    d_ba_vu = self.split_edge(vectors[3].x, ba_vu.x)
+                    d_bc_vc.connect(vco)  # NOTE: Unneeded?
+                    d_bc_vc.connect(d_ba_vu)  # Connect dN cross pairs
+                    yield d_ba_vu
+
+                    # comb = [c_vc, vl, vu, a_vl, a_vu,
+                    #       bc_vc, b_vl, b_vu, ba_vl, ba_vu]
+                    comb = [vl, vu, a_vu,
+                            b_vl, b_vu, ba_vu]
+                    comb_iter = itertools.combinations(comb, 2)
+                    for vecs in comb_iter:
+                        self.split_edge(vecs[0].x, vecs[1].x)
+                    # Add new list of cross pairs
+                    ab_C.append((d_bc_vc, vectors[1], b_vl, a_vu, ba_vu))
+                    ab_C.append((d_bc_vc, vl, b_vl, a_vu, ba_vu))  # = prev
+
+                for vectors in ab_Cc:
+                    bc_vc = list(vectors[0].x)
+                    b_vl = list(vectors[1].x)
+                    b_vu = list(vectors[2].x)
+                    ba_vl = list(vectors[3].x)
+                    ba_vu = list(vectors[4].x)
+                    bc_vc[i + 1] = vut[i + 1]
+                    b_vl[i + 1] = vut[i + 1]
+                    b_vu[i + 1] = vut[i + 1]
+                    ba_vl[i + 1] = vut[i + 1]
+                    ba_vu[i + 1] = vut[i + 1]
+                    bc_vc = self.V[tuple(bc_vc)]
+                    bc_vc.connect(vco)  # NOTE: Unneeded?
+                    yield bc_vc
+
+                    # Split to centre, call this centre group "d = 0.5*a"
+                    d_bc_vc = self.split_edge(vectors[0].x, bc_vc.x)
+                    d_bc_vc.connect(bc_vc)
+                    d_bc_vc.connect(vectors[1])  # Connect all to centroid
+                    d_bc_vc.connect(vectors[2])  # Connect all to centroid
+                    d_bc_vc.connect(vectors[3])  # Connect all to centroid
+                    d_bc_vc.connect(vectors[4])  # Connect all to centroid
+                    yield d_bc_vc.x
+                    b_vl = self.V[tuple(b_vl)]
+                    bc_vc.connect(b_vl)  # Connect aN cross pairs
+                    d_bc_vc.connect(b_vl)  # Connect all to centroid
+                    yield b_vl
+                    b_vu = self.V[tuple(b_vu)]
+                    bc_vc.connect(b_vu)  # Connect aN cross pairs
+                    d_bc_vc.connect(b_vu)  # Connect all to centroid
+                    yield b_vu
+                    ba_vl = self.V[tuple(ba_vl)]
+                    bc_vc.connect(ba_vl)  # Connect aN cross pairs
+                    d_bc_vc.connect(ba_vl)  # Connect all to centroid
+                    self.split_edge(b_vu.x, ba_vl.x)
+                    yield ba_vl
+                    ba_vu = self.V[tuple(ba_vu)]
+                    bc_vc.connect(ba_vu)  # Connect aN cross pairs
+                    d_bc_vc.connect(ba_vu)  # Connect all to centroid
+                    # Split the a + b edge of the initial triangulation:
+                    os_v = self.split_edge(vectors[1].x, ba_vu.x)  # o-s
+                    ss_v = self.split_edge(b_vl.x, ba_vu.x)  # s-s
+                    yield os_v.x  # often equal to vco, but not always
+                    yield ss_v.x  # often equal to bc_vu, but not always
+                    yield ba_vu
+                    # Split remaining to centre, call this centre group
+                    # "d = 0.5*a"
+                    d_bc_vc = self.split_edge(vectors[0].x, bc_vc.x)
+                    d_bc_vc.connect(vco)  # NOTE: Unneeded?
+                    yield d_bc_vc.x
+                    d_b_vl = self.split_edge(vectors[1].x, b_vl.x)
+                    d_bc_vc.connect(vco)  # NOTE: Unneeded?
+                    d_bc_vc.connect(d_b_vl)  # Connect dN cross pairs
+                    yield d_b_vl.x
+                    d_b_vu = self.split_edge(vectors[2].x, b_vu.x)
+                    d_bc_vc.connect(vco)  # NOTE: Unneeded?
+                    d_bc_vc.connect(d_b_vu)  # Connect dN cross pairs
+                    yield d_b_vu.x
+                    d_ba_vl = self.split_edge(vectors[3].x, ba_vl.x)
+                    d_bc_vc.connect(vco)  # NOTE: Unneeded?
+                    d_bc_vc.connect(d_ba_vl)  # Connect dN cross pairs
+                    yield d_ba_vl
+                    d_ba_vu = self.split_edge(vectors[4].x, ba_vu.x)
+                    d_bc_vc.connect(vco)  # NOTE: Unneeded?
+                    d_bc_vc.connect(d_ba_vu)  # Connect dN cross pairs
+                    yield d_ba_vu
+                    c_vc, vl, vu, a_vl, a_vu = vectors
+
+                    comb = [vl, vu, a_vl, a_vu,
+                            b_vl, b_vu, ba_vl, ba_vu]
+                    comb_iter = itertools.combinations(comb, 2)
+                    for vecs in comb_iter:
+                        self.split_edge(vecs[0].x, vecs[1].x)
+
+                    # Add new list of cross pairs
+                    ab_C.append((bc_vc, b_vl, b_vu, ba_vl, ba_vu))
+                    ab_C.append((d_bc_vc, d_b_vl, d_b_vu, d_ba_vl, d_ba_vu))
+                    ab_C.append((d_bc_vc, vectors[1], b_vl, a_vu, ba_vu))
+                    ab_C.append((d_bc_vc, vu, b_vu, a_vl, ba_vl))
+
+                for j, (VL, VC, VU) in enumerate(zip(cCox, cCcx, cCux)):
+                    for k, (vl, vc, vu) in enumerate(zip(VL, VC, VU)):
+                        # Build aN vertices for each lower-upper C3 group in N:
+                        a_vl = list(vl.x)
+                        a_vu = list(vu.x)
+                        a_vl[i + 1] = vut[i + 1]
+                        a_vu[i + 1] = vut[i + 1]
+                        a_vl = self.V[tuple(a_vl)]
+                        a_vu = self.V[tuple(a_vu)]
+                        # Note, build (a + vc) later for consistent yields
+                        # Split the a + b edge of the initial triangulation:
+                        c_vc = self.split_edge(vl.x, a_vu.x)
+                        self.split_edge(vl.x, vu.x)  # Equal to vc
+                        # Build cN vertices for each lower-upper C3 group in N:
+                        c_vc.connect(vco)
+                        c_vc.connect(vc)
+                        c_vc.connect(vl)  # Connect c + ac operations
+                        c_vc.connect(vu)  # Connect c + ac operations
+                        c_vc.connect(a_vl)  # Connect c + ac operations
+                        c_vc.connect(a_vu)  # Connect c + ac operations
+                        yield c_vc.x
+                        c_vl = self.split_edge(vl.x, a_vl.x)
+                        c_vl.connect(vco)
+                        c_vc.connect(c_vl)  # Connect cN group vertices
+                        yield c_vl.x
+                        # yield at end of loop:
+                        c_vu = self.split_edge(vu.x, a_vu.x)
+                        c_vu.connect(vco)
+                        # Connect remaining cN group vertices
+                        c_vc.connect(c_vu)  # Connect cN group vertices
+                        yield c_vu.x
+
+                        a_vc = self.split_edge(a_vl.x, a_vu.x)  # is (a + vc) ?
+                        a_vc.connect(vco)
+                        a_vc.connect(c_vc)
+
+                        # Storage for connecting c + ac operations:
+                        ab_C.append((c_vc, vl, vu, a_vl, a_vu))
+
+                        # Update the containers
+                        Cox[i + 1].append(vl)
+                        Cox[i + 1].append(vc)
+                        Cox[i + 1].append(vu)
+                        Ccx[i + 1].append(c_vl)
+                        Ccx[i + 1].append(c_vc)
+                        Ccx[i + 1].append(c_vu)
+                        Cux[i + 1].append(a_vl)
+                        Cux[i + 1].append(a_vc)
+                        Cux[i + 1].append(a_vu)
+
+                        # Update old containers
+                        Cox[j].append(c_vl)  # !
+                        Cox[j].append(a_vl)
+                        Ccx[j].append(c_vc)  # !
+                        Ccx[j].append(a_vc)  # !
+                        Cux[j].append(c_vu)  # !
+                        Cux[j].append(a_vu)
+
+                        # Yield new points
+                        yield a_vc.x
+
+            except IndexError:
+                for vectors in ab_Cc:
+                    ba_vl = list(vectors[3].x)
+                    ba_vu = list(vectors[4].x)
+                    ba_vl[i + 1] = vut[i + 1]
+                    ba_vu[i + 1] = vut[i + 1]
+                    ba_vu = self.V[tuple(ba_vu)]
+                    yield ba_vu
+                    d_bc_vc = self.split_edge(vectors[1].x, ba_vu.x)  # o-s
+                    yield ba_vu
+                    d_bc_vc.connect(vectors[1])  # Connect all to centroid
+                    d_bc_vc.connect(vectors[2])  # Connect all to centroid
+                    d_bc_vc.connect(vectors[3])  # Connect all to centroid
+                    d_bc_vc.connect(vectors[4])  # Connect all to centroid
+                    yield d_bc_vc.x
+                    ba_vl = self.V[tuple(ba_vl)]
+                    yield ba_vl
+                    d_ba_vl = self.split_edge(vectors[3].x, ba_vl.x)
+                    d_ba_vu = self.split_edge(vectors[4].x, ba_vu.x)
+                    d_ba_vc = self.split_edge(d_ba_vl.x, d_ba_vu.x)
+                    yield d_ba_vl
+                    yield d_ba_vu
+                    yield d_ba_vc
+                    c_vc, vl, vu, a_vl, a_vu = vectors
+                    comb = [vl, vu, a_vl, a_vu,
+                            ba_vl,
+                            ba_vu]
+                    comb_iter = itertools.combinations(comb, 2)
+                    for vecs in comb_iter:
+                        self.split_edge(vecs[0].x, vecs[1].x)
+
+                # Copy lists for iteration
+                cCox = Cox[i]
+                cCcx = Ccx[i]
+                cCux = Cux[i]
+                VL, VC, VU = cCox, cCcx, cCux
+                for k, (vl, vc, vu) in enumerate(zip(VL, VC, VU)):
+                    # Build aN vertices for each lower-upper pair in N:
+                    a_vu = list(vu.x)
+                    a_vu[i + 1] = vut[i + 1]
+
+                    # Connect vertices in N to corresponding vertices
+                    # in aN:
+                    a_vu = self.V[tuple(a_vu)]
+                    yield a_vl.x
+                    # Split the a + b edge of the initial triangulation:
+                    c_vc = self.split_edge(vl.x, a_vu.x)
+                    self.split_edge(vl.x, vu.x)  # Equal to vc
+                    c_vc.connect(vco)
+                    c_vc.connect(vc)
+                    c_vc.connect(vl)  # Connect c + ac operations
+                    c_vc.connect(vu)  # Connect c + ac operations
+                    c_vc.connect(a_vu)  # Connect c + ac operations
+                    yield (c_vc.x)
+                    c_vu = self.split_edge(vu.x,
+                                           a_vu.x)  # yield at end of loop
+                    c_vu.connect(vco)
+                    # Connect remaining cN group vertices
+                    c_vc.connect(c_vu)  # Connect cN group vertices
+                    yield (c_vu.x)
+
+                    # Update the containers
+                    Cox[i + 1].append(vu)
+                    Ccx[i + 1].append(c_vu)
+                    Cux[i + 1].append(a_vu)
+
+                    # Update old containers
+                    s_ab_C.append([c_vc, vl, vu, a_vu])
+
+                    yield a_vu.x
+
+        # Clean class trash
+        try:
+            del Cox
+            del Ccx
+            del Cux
+            del ab_C
+            del ab_Cc
+        except UnboundLocalError:
+            pass
+
+        try:
+            self.triangulated_vectors.remove((tuple(origin_c),
+                                              tuple(supremum_c)))
+        except ValueError:
+            # Turn this into a logging warning?
+            pass
+        # Add newly triangulated vectors:
+        for vs in sup_set:
+            self.triangulated_vectors.append((tuple(vco.x), tuple(vs.x)))
+
+        # Extra yield to ensure that the triangulation is completed
+        if centroid:
+            vcn_set = set()
+            c_nn_lists = []
+            for vs in sup_set:
+                # Build centroid
+                c_nn = self.vpool(vco.x, vs.x)
+                try:
+                    c_nn.remove(vcn_set)
+                except KeyError:
+                    pass
+                c_nn_lists.append(c_nn)
+
+            for c_nn in c_nn_lists:
+                try:
+                    c_nn.remove(vcn_set)
+                except KeyError:
+                    pass
+
+            for vs, c_nn in zip(sup_set, c_nn_lists):
+                # Build centroid
+                vcn = self.split_edge(vco.x, vs.x)
+                vcn_set.add(vcn)
+                try:  # Shouldn't be needed?
+                    c_nn.remove(vcn_set)
+                except KeyError:
+                    pass
+                for vnn in c_nn:
+                    vcn.connect(vnn)
+                yield vcn.x
+        else:
+            pass
+
+        yield vut
+        return
+
+    def refine_star(self, v):
+        """Refine the star domain of a vertex `v`."""
+        # Copy lists before iteration
+        vnn = copy.copy(v.nn)
+        v1nn = []
+        d_v0v1_set = set()
+        for v1 in vnn:
+            v1nn.append(copy.copy(v1.nn))
+
+        for v1, v1nn in zip(vnn, v1nn):
+            vnnu = v1nn.intersection(vnn)
+
+            d_v0v1 = self.split_edge(v.x, v1.x)
+            for o_d_v0v1 in d_v0v1_set:
+                d_v0v1.connect(o_d_v0v1)
+            d_v0v1_set.add(d_v0v1)
+            for v2 in vnnu:
+                d_v1v2 = self.split_edge(v1.x, v2.x)
+                d_v0v1.connect(d_v1v2)
+        return
+
+    @cache
+    def split_edge(self, v1, v2):
+        v1 = self.V[v1]
+        v2 = self.V[v2]
+        # Destroy original edge, if it exists:
+        v1.disconnect(v2)
+        # Compute vertex on centre of edge:
+        try:
+            vct = (v2.x_a - v1.x_a) / 2.0 + v1.x_a
+        except TypeError:  # Allow for decimal operations
+            vct = (v2.x_a - v1.x_a) / decimal.Decimal(2.0) + v1.x_a
+
+        vc = self.V[tuple(vct)]
+        # Connect to original 2 vertices to the new centre vertex
+        vc.connect(v1)
+        vc.connect(v2)
+        return vc
+
+    def vpool(self, origin, supremum):
+        vot = tuple(origin)
+        vst = tuple(supremum)
+        # Initiate vertices in case they don't exist
+        vo = self.V[vot]
+        vs = self.V[vst]
+
+        # Remove origin - supremum disconnect
+
+        # Find the lower/upper bounds of the refinement hyperrectangle
+        bl = list(vot)
+        bu = list(vst)
+        for i, (voi, vsi) in enumerate(zip(vot, vst)):
+            if bl[i] > vsi:
+                bl[i] = vsi
+            if bu[i] < voi:
+                bu[i] = voi
+
+        #      NOTE: This is mostly done with sets/lists because we aren't sure
+        #            how well the numpy arrays will scale to thousands of
+        #             dimensions.
+        vn_pool = set()
+        vn_pool.update(vo.nn)
+        vn_pool.update(vs.nn)
+        cvn_pool = copy.copy(vn_pool)
+        for vn in cvn_pool:
+            for i, xi in enumerate(vn.x):
+                if bl[i] <= xi <= bu[i]:
+                    pass
+                else:
+                    try:
+                        vn_pool.remove(vn)
+                    except KeyError:
+                        pass  # NOTE: Not all neigbouds are in initial pool
+        return vn_pool
+
+    def vf_to_vv(self, vertices, simplices):
+        """
+        Convert a vertex-face mesh to a vertex-vertex mesh used by this class
+
+        Parameters
+        ----------
+        vertices : list
+            Vertices
+        simplices : list
+            Simplices
+        """
+        if self.dim > 1:
+            for s in simplices:
+                edges = itertools.combinations(s, self.dim)
+                for e in edges:
+                    self.V[tuple(vertices[e[0]])].connect(
+                        self.V[tuple(vertices[e[1]])])
+        else:
+            for e in simplices:
+                self.V[tuple(vertices[e[0]])].connect(
+                    self.V[tuple(vertices[e[1]])])
+        return
+
+    def connect_vertex_non_symm(self, v_x, near=None):
+        """
+        Adds a vertex at coords v_x to the complex that is not symmetric to the
+        initial triangulation and sub-triangulation.
+
+        If near is specified (for example; a star domain or collections of
+        cells known to contain v) then only those simplices containd in near
+        will be searched, this greatly speeds up the process.
+
+        If near is not specified this method will search the entire simplicial
+        complex structure.
+
+        Parameters
+        ----------
+        v_x : tuple
+            Coordinates of non-symmetric vertex
+        near : set or list
+            List of vertices, these are points near v to check for
+        """
+        if near is None:
+            star = self.V
+        else:
+            star = near
+        # Create the vertex origin
+        if tuple(v_x) in self.V.cache:
+            if self.V[v_x] in self.V_non_symm:
+                pass
+            else:
+                return
+
+        self.V[v_x]
+        found_nn = False
+        S_rows = []
+        for v in star:
+            S_rows.append(v.x)
+
+        S_rows = numpy.array(S_rows)
+        A = numpy.array(S_rows) - numpy.array(v_x)
+        # Iterate through all the possible simplices of S_rows
+        for s_i in itertools.combinations(range(S_rows.shape[0]),
+                                          r=self.dim + 1):
+            # Check if connected, else s_i is not a simplex
+            valid_simplex = True
+            for i in itertools.combinations(s_i, r=2):
+                # Every combination of vertices must be connected, we check of
+                # the current iteration of all combinations of s_i are
+                # connected we break the loop if it is not.
+                if ((self.V[tuple(S_rows[i[1]])] not in
+                        self.V[tuple(S_rows[i[0]])].nn)
+                    and (self.V[tuple(S_rows[i[0]])] not in
+                         self.V[tuple(S_rows[i[1]])].nn)):
+                    valid_simplex = False
+                    break
+
+            S = S_rows[tuple([s_i])]
+            if valid_simplex:
+                if self.deg_simplex(S, proj=None):
+                    valid_simplex = False
+
+            # If s_i is a valid simplex we can test if v_x is inside si
+            if valid_simplex:
+                # Find the A_j0 value from the precalculated values
+                A_j0 = A[tuple([s_i])]
+                if self.in_simplex(S, v_x, A_j0):
+                    found_nn = True
+                    # breaks the main for loop, s_i is the target simplex:
+                    break
+
+        # Connect the simplex to point
+        if found_nn:
+            for i in s_i:
+                self.V[v_x].connect(self.V[tuple(S_rows[i])])
+        # Attached the simplex to storage for all non-symmetric vertices
+        self.V_non_symm.append(self.V[v_x])
+        # this bool value indicates a successful connection if True:
+        return found_nn
+
+    def in_simplex(self, S, v_x, A_j0=None):
+        """Check if a vector v_x is in simplex `S`.
+
+        Parameters
+        ----------
+        S : array_like
+            Array containing simplex entries of vertices as rows
+        v_x :
+            A candidate vertex
+        A_j0 : array, optional,
+            Allows for A_j0 to be pre-calculated
+
+        Returns
+        -------
+        res : boolean
+            True if `v_x` is in `S`
+        """
+        A_11 = numpy.delete(S, 0, 0) - S[0]
+
+        sign_det_A_11 = numpy.sign(numpy.linalg.det(A_11))
+        if sign_det_A_11 == 0:
+            # NOTE: We keep the variable A_11, but we loop through A_jj
+            # ind=
+            # while sign_det_A_11 == 0:
+            #    A_11 = numpy.delete(S, ind, 0) - S[ind]
+            #    sign_det_A_11 = numpy.sign(numpy.linalg.det(A_11))
+
+            sign_det_A_11 = -1  # TODO: Choose another det of j instead?
+            # TODO: Unlikely to work in many cases
+
+        if A_j0 is None:
+            A_j0 = S - v_x
+
+        for d in range(self.dim + 1):
+            det_A_jj = (-1)**d * sign_det_A_11
+            # TODO: Note that scipy might be faster to add as an optional
+            #       dependency
+            sign_det_A_j0 = numpy.sign(numpy.linalg.det(numpy.delete(A_j0, d,
+                                                                     0)))
+            # TODO: Note if sign_det_A_j0 == then the point is coplanar to the
+            #       current simplex facet, so perhaps return True and attach?
+            if det_A_jj == sign_det_A_j0:
+                continue
+            else:
+                return False
+
+        return True
+
+    def deg_simplex(self, S, proj=None):
+        """Test a simplex S for degeneracy (linear dependence in R^dim).
+
+        Parameters
+        ----------
+        S : np.array
+            Simplex with rows as vertex vectors
+        proj : array, optional,
+            If the projection S[1:] - S[0] is already
+            computed it can be added as an optional argument.
+        """
+        # Strategy: we test all combination of faces, if any of the
+        # determinants are zero then the vectors lie on the same face and is
+        # therefore linearly dependent in the space of R^dim
+        if proj is None:
+            proj = S[1:] - S[0]
+
+        # TODO: Is checking the projection of one vertex against faces of other
+        #       vertices sufficient? Or do we need to check more vertices in
+        #       dimensions higher than 2?
+        # TODO: Literature seems to suggest using proj.T, but why is this
+        #       needed?
+        if numpy.linalg.det(proj) == 0.0:  # TODO: Repalace with tolerance?
+            return True  # Simplex is degenerate
+        else:
+            return False  # Simplex is not degenerate

venv/lib/python3.10/site-packages/scipy/optimize/_shgo_lib/_vertex.py

@@ -0,0 +1,460 @@
+import collections
+from abc import ABC, abstractmethod
+
+import numpy as np
+
+from scipy._lib._util import MapWrapper
+
+
+class VertexBase(ABC):
+    """
+    Base class for a vertex.
+    """
+    def __init__(self, x, nn=None, index=None):
+        """
+        Initiation of a vertex object.
+
+        Parameters
+        ----------
+        x : tuple or vector
+            The geometric location (domain).
+        nn : list, optional
+            Nearest neighbour list.
+        index : int, optional
+            Index of vertex.
+        """
+        self.x = x
+        self.hash = hash(self.x)  # Save precomputed hash
+
+        if nn is not None:
+            self.nn = set(nn)  # can use .indexupdate to add a new list
+        else:
+            self.nn = set()
+
+        self.index = index
+
+    def __hash__(self):
+        return self.hash
+
+    def __getattr__(self, item):
+        if item not in ['x_a']:
+            raise AttributeError(f"{type(self)} object has no attribute "
+                                 f"'{item}'")
+        if item == 'x_a':
+            self.x_a = np.array(self.x)
+            return self.x_a
+
+    @abstractmethod
+    def connect(self, v):
+        raise NotImplementedError("This method is only implemented with an "
+                                  "associated child of the base class.")
+
+    @abstractmethod
+    def disconnect(self, v):
+        raise NotImplementedError("This method is only implemented with an "
+                                  "associated child of the base class.")
+
+    def star(self):
+        """Returns the star domain ``st(v)`` of the vertex.
+
+        Parameters
+        ----------
+        v :
+            The vertex ``v`` in ``st(v)``
+
+        Returns
+        -------
+        st : set
+            A set containing all the vertices in ``st(v)``
+        """
+        self.st = self.nn
+        self.st.add(self)
+        return self.st
+
+
+class VertexScalarField(VertexBase):
+    """
+    Add homology properties of a scalar field f: R^n --> R associated with
+    the geometry built from the VertexBase class
+    """
+
+    def __init__(self, x, field=None, nn=None, index=None, field_args=(),
+                 g_cons=None, g_cons_args=()):
+        """
+        Parameters
+        ----------
+        x : tuple,
+            vector of vertex coordinates
+        field : callable, optional
+            a scalar field f: R^n --> R associated with the geometry
+        nn : list, optional
+            list of nearest neighbours
+        index : int, optional
+            index of the vertex
+        field_args : tuple, optional
+            additional arguments to be passed to field
+        g_cons : callable, optional
+            constraints on the vertex
+        g_cons_args : tuple, optional
+            additional arguments to be passed to g_cons
+
+        """
+        super().__init__(x, nn=nn, index=index)
+
+        # Note Vertex is only initiated once for all x so only
+        # evaluated once
+        # self.feasible = None
+
+        # self.f is externally defined by the cache to allow parallel
+        # processing
+        # None type that will break arithmetic operations unless defined
+        # self.f = None
+
+        self.check_min = True
+        self.check_max = True
+
+    def connect(self, v):
+        """Connects self to another vertex object v.
+
+        Parameters
+        ----------
+        v : VertexBase or VertexScalarField object
+        """
+        if v is not self and v not in self.nn:
+            self.nn.add(v)
+            v.nn.add(self)
+
+            # Flags for checking homology properties:
+            self.check_min = True
+            self.check_max = True
+            v.check_min = True
+            v.check_max = True
+
+    def disconnect(self, v):
+        if v in self.nn:
+            self.nn.remove(v)
+            v.nn.remove(self)
+
+            # Flags for checking homology properties:
+            self.check_min = True
+            self.check_max = True
+            v.check_min = True
+            v.check_max = True
+
+    def minimiser(self):
+        """Check whether this vertex is strictly less than all its
+           neighbours"""
+        if self.check_min:
+            self._min = all(self.f < v.f for v in self.nn)
+            self.check_min = False
+
+        return self._min
+
+    def maximiser(self):
+        """
+        Check whether this vertex is strictly greater than all its
+        neighbours.
+        """
+        if self.check_max:
+            self._max = all(self.f > v.f for v in self.nn)
+            self.check_max = False
+
+        return self._max
+
+
+class VertexVectorField(VertexBase):
+    """
+    Add homology properties of a scalar field f: R^n --> R^m associated with
+    the geometry built from the VertexBase class.
+    """
+
+    def __init__(self, x, sfield=None, vfield=None, field_args=(),
+                 vfield_args=(), g_cons=None,
+                 g_cons_args=(), nn=None, index=None):
+        super().__init__(x, nn=nn, index=index)
+
+        raise NotImplementedError("This class is still a work in progress")
+
+
+class VertexCacheBase:
+    """Base class for a vertex cache for a simplicial complex."""
+    def __init__(self):
+
+        self.cache = collections.OrderedDict()
+        self.nfev = 0  # Feasible points
+        self.index = -1
+
+    def __iter__(self):
+        for v in self.cache:
+            yield self.cache[v]
+        return
+
+    def size(self):
+        """Returns the size of the vertex cache."""
+        return self.index + 1
+
+    def print_out(self):
+        headlen = len(f"Vertex cache of size: {len(self.cache)}:")
+        print('=' * headlen)
+        print(f"Vertex cache of size: {len(self.cache)}:")
+        print('=' * headlen)
+        for v in self.cache:
+            self.cache[v].print_out()
+
+
+class VertexCube(VertexBase):
+    """Vertex class to be used for a pure simplicial complex with no associated
+    differential geometry (single level domain that exists in R^n)"""
+    def __init__(self, x, nn=None, index=None):
+        super().__init__(x, nn=nn, index=index)
+
+    def connect(self, v):
+        if v is not self and v not in self.nn:
+            self.nn.add(v)
+            v.nn.add(self)
+
+    def disconnect(self, v):
+        if v in self.nn:
+            self.nn.remove(v)
+            v.nn.remove(self)
+
+
+class VertexCacheIndex(VertexCacheBase):
+    def __init__(self):
+        """
+        Class for a vertex cache for a simplicial complex without an associated
+        field. Useful only for building and visualising a domain complex.
+
+        Parameters
+        ----------
+        """
+        super().__init__()
+        self.Vertex = VertexCube
+
+    def __getitem__(self, x, nn=None):
+        try:
+            return self.cache[x]
+        except KeyError:
+            self.index += 1
+            xval = self.Vertex(x, index=self.index)
+            # logging.info("New generated vertex at x = {}".format(x))
+            # NOTE: Surprisingly high performance increase if logging
+            # is commented out
+            self.cache[x] = xval
+            return self.cache[x]
+
+
+class VertexCacheField(VertexCacheBase):
+    def __init__(self, field=None, field_args=(), g_cons=None, g_cons_args=(),
+                 workers=1):
+        """
+        Class for a vertex cache for a simplicial complex with an associated
+        field.
+
+        Parameters
+        ----------
+        field : callable
+            Scalar or vector field callable.
+        field_args : tuple, optional
+            Any additional fixed parameters needed to completely specify the
+            field function
+        g_cons : dict or sequence of dict, optional
+            Constraints definition.
+            Function(s) ``R**n`` in the form::
+        g_cons_args : tuple, optional
+            Any additional fixed parameters needed to completely specify the
+            constraint functions
+        workers : int  optional
+            Uses `multiprocessing.Pool <multiprocessing>`) to compute the field
+             functions in parallel.
+
+        """
+        super().__init__()
+        self.index = -1
+        self.Vertex = VertexScalarField
+        self.field = field
+        self.field_args = field_args
+        self.wfield = FieldWrapper(field, field_args)  # if workers is not 1
+
+        self.g_cons = g_cons
+        self.g_cons_args = g_cons_args
+        self.wgcons = ConstraintWrapper(g_cons, g_cons_args)
+        self.gpool = set()  # A set of tuples to process for feasibility
+
+        # Field processing objects
+        self.fpool = set()  # A set of tuples to process for scalar function
+        self.sfc_lock = False  # True if self.fpool is non-Empty
+
+        self.workers = workers
+        self._mapwrapper = MapWrapper(workers)
+
+        if workers == 1:
+            self.process_gpool = self.proc_gpool
+            if g_cons is None:
+                self.process_fpool = self.proc_fpool_nog
+            else:
+                self.process_fpool = self.proc_fpool_g
+        else:
+            self.process_gpool = self.pproc_gpool
+            if g_cons is None:
+                self.process_fpool = self.pproc_fpool_nog
+            else:
+                self.process_fpool = self.pproc_fpool_g
+
+    def __getitem__(self, x, nn=None):
+        try:
+            return self.cache[x]
+        except KeyError:
+            self.index += 1
+            xval = self.Vertex(x, field=self.field, nn=nn, index=self.index,
+                               field_args=self.field_args,
+                               g_cons=self.g_cons,
+                               g_cons_args=self.g_cons_args)
+
+            self.cache[x] = xval  # Define in cache
+            self.gpool.add(xval)  # Add to pool for processing feasibility
+            self.fpool.add(xval)  # Add to pool for processing field values
+            return self.cache[x]
+
+    def __getstate__(self):
+        self_dict = self.__dict__.copy()
+        del self_dict['pool']
+        return self_dict
+
+    def process_pools(self):
+        if self.g_cons is not None:
+            self.process_gpool()
+        self.process_fpool()
+        self.proc_minimisers()
+
+    def feasibility_check(self, v):
+        v.feasible = True
+        for g, args in zip(self.g_cons, self.g_cons_args):
+            # constraint may return more than 1 value.
+            if np.any(g(v.x_a, *args) < 0.0):
+                v.f = np.inf
+                v.feasible = False
+                break
+
+    def compute_sfield(self, v):
+        """Compute the scalar field values of a vertex object `v`.
+
+        Parameters
+        ----------
+        v : VertexBase or VertexScalarField object
+        """
+        try:
+            v.f = self.field(v.x_a, *self.field_args)
+            self.nfev += 1
+        except AttributeError:
+            v.f = np.inf
+            # logging.warning(f"Field function not found at x = {self.x_a}")
+        if np.isnan(v.f):
+            v.f = np.inf
+
+    def proc_gpool(self):
+        """Process all constraints."""
+        if self.g_cons is not None:
+            for v in self.gpool:
+                self.feasibility_check(v)
+        # Clean the pool
+        self.gpool = set()
+
+    def pproc_gpool(self):
+        """Process all constraints in parallel."""
+        gpool_l = []
+        for v in self.gpool:
+            gpool_l.append(v.x_a)
+
+        G = self._mapwrapper(self.wgcons.gcons, gpool_l)
+        for v, g in zip(self.gpool, G):
+            v.feasible = g  # set vertex object attribute v.feasible = g (bool)
+
+    def proc_fpool_g(self):
+        """Process all field functions with constraints supplied."""
+        for v in self.fpool:
+            if v.feasible:
+                self.compute_sfield(v)
+        # Clean the pool
+        self.fpool = set()
+
+    def proc_fpool_nog(self):
+        """Process all field functions with no constraints supplied."""
+        for v in self.fpool:
+            self.compute_sfield(v)
+        # Clean the pool
+        self.fpool = set()
+
+    def pproc_fpool_g(self):
+        """
+        Process all field functions with constraints supplied in parallel.
+        """
+        self.wfield.func
+        fpool_l = []
+        for v in self.fpool:
+            if v.feasible:
+                fpool_l.append(v.x_a)
+            else:
+                v.f = np.inf
+        F = self._mapwrapper(self.wfield.func, fpool_l)
+        for va, f in zip(fpool_l, F):
+            vt = tuple(va)
+            self[vt].f = f  # set vertex object attribute v.f = f
+            self.nfev += 1
+        # Clean the pool
+        self.fpool = set()
+
+    def pproc_fpool_nog(self):
+        """
+        Process all field functions with no constraints supplied in parallel.
+        """
+        self.wfield.func
+        fpool_l = []
+        for v in self.fpool:
+            fpool_l.append(v.x_a)
+        F = self._mapwrapper(self.wfield.func, fpool_l)
+        for va, f in zip(fpool_l, F):
+            vt = tuple(va)
+            self[vt].f = f  # set vertex object attribute v.f = f
+            self.nfev += 1
+        # Clean the pool
+        self.fpool = set()
+
+    def proc_minimisers(self):
+        """Check for minimisers."""
+        for v in self:
+            v.minimiser()
+            v.maximiser()
+
+
+class ConstraintWrapper:
+    """Object to wrap constraints to pass to `multiprocessing.Pool`."""
+    def __init__(self, g_cons, g_cons_args):
+        self.g_cons = g_cons
+        self.g_cons_args = g_cons_args
+
+    def gcons(self, v_x_a):
+        vfeasible = True
+        for g, args in zip(self.g_cons, self.g_cons_args):
+            # constraint may return more than 1 value.
+            if np.any(g(v_x_a, *args) < 0.0):
+                vfeasible = False
+                break
+        return vfeasible
+
+
+class FieldWrapper:
+    """Object to wrap field to pass to `multiprocessing.Pool`."""
+    def __init__(self, field, field_args):
+        self.field = field
+        self.field_args = field_args
+
+    def func(self, v_x_a):
+        try:
+            v_f = self.field(v_x_a, *self.field_args)
+        except Exception:
+            v_f = np.inf
+        if np.isnan(v_f):
+            v_f = np.inf
+
+        return v_f

venv/lib/python3.10/site-packages/scipy/optimize/_trlib/__init__.py

@@ -0,0 +1,12 @@
+from ._trlib import TRLIBQuadraticSubproblem
+
+__all__ = ['TRLIBQuadraticSubproblem', 'get_trlib_quadratic_subproblem']
+
+
+def get_trlib_quadratic_subproblem(tol_rel_i=-2.0, tol_rel_b=-3.0, disp=False):
+    def subproblem_factory(x, fun, jac, hess, hessp):
+        return TRLIBQuadraticSubproblem(x, fun, jac, hess, hessp,
+                                        tol_rel_i=tol_rel_i,
+                                        tol_rel_b=tol_rel_b,
+                                        disp=disp)
+    return subproblem_factory

venv/lib/python3.10/site-packages/scipy/signal/__init__.py

@@ -0,0 +1,346 @@
+"""
+=======================================
+Signal processing (:mod:`scipy.signal`)
+=======================================
+
+Convolution
+===========
+
+.. autosummary::
+   :toctree: generated/
+
+   convolve           -- N-D convolution.
+   correlate          -- N-D correlation.
+   fftconvolve        -- N-D convolution using the FFT.
+   oaconvolve         -- N-D convolution using the overlap-add method.
+   convolve2d         -- 2-D convolution (more options).
+   correlate2d        -- 2-D correlation (more options).
+   sepfir2d           -- Convolve with a 2-D separable FIR filter.
+   choose_conv_method -- Chooses faster of FFT and direct convolution methods.
+   correlation_lags   -- Determines lag indices for 1D cross-correlation.
+
+B-splines
+=========
+
+.. autosummary::
+   :toctree: generated/
+
+   gauss_spline   -- Gaussian approximation to the B-spline basis function.
+   cspline1d      -- Coefficients for 1-D cubic (3rd order) B-spline.
+   qspline1d      -- Coefficients for 1-D quadratic (2nd order) B-spline.
+   cspline2d      -- Coefficients for 2-D cubic (3rd order) B-spline.
+   qspline2d      -- Coefficients for 2-D quadratic (2nd order) B-spline.
+   cspline1d_eval -- Evaluate a cubic spline at the given points.
+   qspline1d_eval -- Evaluate a quadratic spline at the given points.
+   spline_filter  -- Smoothing spline (cubic) filtering of a rank-2 array.
+
+Filtering
+=========
+
+.. autosummary::
+   :toctree: generated/
+
+   order_filter  -- N-D order filter.
+   medfilt       -- N-D median filter.
+   medfilt2d     -- 2-D median filter (faster).
+   wiener        -- N-D Wiener filter.
+
+   symiirorder1  -- 2nd-order IIR filter (cascade of first-order systems).
+   symiirorder2  -- 4th-order IIR filter (cascade of second-order systems).
+   lfilter       -- 1-D FIR and IIR digital linear filtering.
+   lfiltic       -- Construct initial conditions for `lfilter`.
+   lfilter_zi    -- Compute an initial state zi for the lfilter function that
+                 -- corresponds to the steady state of the step response.
+   filtfilt      -- A forward-backward filter.
+   savgol_filter -- Filter a signal using the Savitzky-Golay filter.
+
+   deconvolve    -- 1-D deconvolution using lfilter.
+
+   sosfilt       -- 1-D IIR digital linear filtering using
+                 -- a second-order sections filter representation.
+   sosfilt_zi    -- Compute an initial state zi for the sosfilt function that
+                 -- corresponds to the steady state of the step response.
+   sosfiltfilt   -- A forward-backward filter for second-order sections.
+   hilbert       -- Compute 1-D analytic signal, using the Hilbert transform.
+   hilbert2      -- Compute 2-D analytic signal, using the Hilbert transform.
+
+   decimate      -- Downsample a signal.
+   detrend       -- Remove linear and/or constant trends from data.
+   resample      -- Resample using Fourier method.
+   resample_poly -- Resample using polyphase filtering method.
+   upfirdn       -- Upsample, apply FIR filter, downsample.
+
+Filter design
+=============
+
+.. autosummary::
+   :toctree: generated/
+
+   bilinear      -- Digital filter from an analog filter using
+                    -- the bilinear transform.
+   bilinear_zpk  -- Digital filter from an analog filter using
+                    -- the bilinear transform.
+   findfreqs     -- Find array of frequencies for computing filter response.
+   firls         -- FIR filter design using least-squares error minimization.
+   firwin        -- Windowed FIR filter design, with frequency response
+                    -- defined as pass and stop bands.
+   firwin2       -- Windowed FIR filter design, with arbitrary frequency
+                    -- response.
+   freqs         -- Analog filter frequency response from TF coefficients.
+   freqs_zpk     -- Analog filter frequency response from ZPK coefficients.
+   freqz         -- Digital filter frequency response from TF coefficients.
+   freqz_zpk     -- Digital filter frequency response from ZPK coefficients.
+   sosfreqz      -- Digital filter frequency response for SOS format filter.
+   gammatone     -- FIR and IIR gammatone filter design.
+   group_delay   -- Digital filter group delay.
+   iirdesign     -- IIR filter design given bands and gains.
+   iirfilter     -- IIR filter design given order and critical frequencies.
+   kaiser_atten  -- Compute the attenuation of a Kaiser FIR filter, given
+                    -- the number of taps and the transition width at
+                    -- discontinuities in the frequency response.
+   kaiser_beta   -- Compute the Kaiser parameter beta, given the desired
+                    -- FIR filter attenuation.
+   kaiserord     -- Design a Kaiser window to limit ripple and width of
+                    -- transition region.
+   minimum_phase -- Convert a linear phase FIR filter to minimum phase.
+   savgol_coeffs -- Compute the FIR filter coefficients for a Savitzky-Golay
+                    -- filter.
+   remez         -- Optimal FIR filter design.
+
+   unique_roots  -- Unique roots and their multiplicities.
+   residue       -- Partial fraction expansion of b(s) / a(s).
+   residuez      -- Partial fraction expansion of b(z) / a(z).
+   invres        -- Inverse partial fraction expansion for analog filter.
+   invresz       -- Inverse partial fraction expansion for digital filter.
+   BadCoefficients  -- Warning on badly conditioned filter coefficients.
+
+Lower-level filter design functions:
+
+.. autosummary::
+   :toctree: generated/
+
+   abcd_normalize -- Check state-space matrices and ensure they are rank-2.
+   band_stop_obj  -- Band Stop Objective Function for order minimization.
+   besselap       -- Return (z,p,k) for analog prototype of Bessel filter.
+   buttap         -- Return (z,p,k) for analog prototype of Butterworth filter.
+   cheb1ap        -- Return (z,p,k) for type I Chebyshev filter.
+   cheb2ap        -- Return (z,p,k) for type II Chebyshev filter.
+   cmplx_sort     -- Sort roots based on magnitude.
+   ellipap        -- Return (z,p,k) for analog prototype of elliptic filter.
+   lp2bp          -- Transform a lowpass filter prototype to a bandpass filter.
+   lp2bp_zpk      -- Transform a lowpass filter prototype to a bandpass filter.
+   lp2bs          -- Transform a lowpass filter prototype to a bandstop filter.
+   lp2bs_zpk      -- Transform a lowpass filter prototype to a bandstop filter.
+   lp2hp          -- Transform a lowpass filter prototype to a highpass filter.
+   lp2hp_zpk      -- Transform a lowpass filter prototype to a highpass filter.
+   lp2lp          -- Transform a lowpass filter prototype to a lowpass filter.
+   lp2lp_zpk      -- Transform a lowpass filter prototype to a lowpass filter.
+   normalize      -- Normalize polynomial representation of a transfer function.
+
+
+
+Matlab-style IIR filter design
+==============================
+
+.. autosummary::
+   :toctree: generated/
+
+   butter -- Butterworth
+   buttord
+   cheby1 -- Chebyshev Type I
+   cheb1ord
+   cheby2 -- Chebyshev Type II
+   cheb2ord
+   ellip -- Elliptic (Cauer)
+   ellipord
+   bessel -- Bessel (no order selection available -- try butterod)
+   iirnotch      -- Design second-order IIR notch digital filter.
+   iirpeak       -- Design second-order IIR peak (resonant) digital filter.
+   iircomb       -- Design IIR comb filter.
+
+Continuous-time linear systems
+==============================
+
+.. autosummary::
+   :toctree: generated/
+
+   lti              -- Continuous-time linear time invariant system base class.
+   StateSpace       -- Linear time invariant system in state space form.
+   TransferFunction -- Linear time invariant system in transfer function form.
+   ZerosPolesGain   -- Linear time invariant system in zeros, poles, gain form.
+   lsim             -- Continuous-time simulation of output to linear system.
+   impulse          -- Impulse response of linear, time-invariant (LTI) system.
+   step             -- Step response of continuous-time LTI system.
+   freqresp         -- Frequency response of a continuous-time LTI system.
+   bode             -- Bode magnitude and phase data (continuous-time LTI).
+
+Discrete-time linear systems
+============================
+
+.. autosummary::
+   :toctree: generated/
+
+   dlti             -- Discrete-time linear time invariant system base class.
+   StateSpace       -- Linear time invariant system in state space form.
+   TransferFunction -- Linear time invariant system in transfer function form.
+   ZerosPolesGain   -- Linear time invariant system in zeros, poles, gain form.
+   dlsim            -- Simulation of output to a discrete-time linear system.
+   dimpulse         -- Impulse response of a discrete-time LTI system.
+   dstep            -- Step response of a discrete-time LTI system.
+   dfreqresp        -- Frequency response of a discrete-time LTI system.
+   dbode            -- Bode magnitude and phase data (discrete-time LTI).
+
+LTI representations
+===================
+
+.. autosummary::
+   :toctree: generated/
+
+   tf2zpk        -- Transfer function to zero-pole-gain.
+   tf2sos        -- Transfer function to second-order sections.
+   tf2ss         -- Transfer function to state-space.
+   zpk2tf        -- Zero-pole-gain to transfer function.
+   zpk2sos       -- Zero-pole-gain to second-order sections.
+   zpk2ss        -- Zero-pole-gain to state-space.
+   ss2tf         -- State-pace to transfer function.
+   ss2zpk        -- State-space to pole-zero-gain.
+   sos2zpk       -- Second-order sections to zero-pole-gain.
+   sos2tf        -- Second-order sections to transfer function.
+   cont2discrete -- Continuous-time to discrete-time LTI conversion.
+   place_poles   -- Pole placement.
+
+Waveforms
+=========
+
+.. autosummary::
+   :toctree: generated/
+
+   chirp        -- Frequency swept cosine signal, with several freq functions.
+   gausspulse   -- Gaussian modulated sinusoid.
+   max_len_seq  -- Maximum length sequence.
+   sawtooth     -- Periodic sawtooth.
+   square       -- Square wave.
+   sweep_poly   -- Frequency swept cosine signal; freq is arbitrary polynomial.
+   unit_impulse -- Discrete unit impulse.
+
+Window functions
+================
+
+For window functions, see the `scipy.signal.windows` namespace.
+
+In the `scipy.signal` namespace, there is a convenience function to
+obtain these windows by name:
+
+.. autosummary::
+   :toctree: generated/
+
+   get_window -- Return a window of a given length and type.
+
+Wavelets
+========
+
+.. autosummary::
+   :toctree: generated/
+
+   cascade      -- Compute scaling function and wavelet from coefficients.
+   daub         -- Return low-pass.
+   morlet       -- Complex Morlet wavelet.
+   qmf          -- Return quadrature mirror filter from low-pass.
+   ricker       -- Return ricker wavelet.
+   morlet2      -- Return Morlet wavelet, compatible with cwt.
+   cwt          -- Perform continuous wavelet transform.
+
+Peak finding
+============
+
+.. autosummary::
+   :toctree: generated/
+
+   argrelmin        -- Calculate the relative minima of data.
+   argrelmax        -- Calculate the relative maxima of data.
+   argrelextrema    -- Calculate the relative extrema of data.
+   find_peaks       -- Find a subset of peaks inside a signal.
+   find_peaks_cwt   -- Find peaks in a 1-D array with wavelet transformation.
+   peak_prominences -- Calculate the prominence of each peak in a signal.
+   peak_widths      -- Calculate the width of each peak in a signal.
+
+Spectral analysis
+=================
+
+.. autosummary::
+   :toctree: generated/
+
+   periodogram    -- Compute a (modified) periodogram.
+   welch          -- Compute a periodogram using Welch's method.
+   csd            -- Compute the cross spectral density, using Welch's method.
+   coherence      -- Compute the magnitude squared coherence, using Welch's method.
+   spectrogram    -- Compute the spectrogram (legacy).
+   lombscargle    -- Computes the Lomb-Scargle periodogram.
+   vectorstrength -- Computes the vector strength.
+   ShortTimeFFT   -- Interface for calculating the \
+                     :ref:`Short Time Fourier Transform <tutorial_stft>` and \
+                     its inverse.
+   stft           -- Compute the Short Time Fourier Transform (legacy).
+   istft          -- Compute the Inverse Short Time Fourier Transform (legacy).
+   check_COLA     -- Check the COLA constraint for iSTFT reconstruction.
+   check_NOLA     -- Check the NOLA constraint for iSTFT reconstruction.
+
+Chirp Z-transform and Zoom FFT
+============================================
+
+.. autosummary::
+   :toctree: generated/
+
+   czt - Chirp z-transform convenience function
+   zoom_fft - Zoom FFT convenience function
+   CZT - Chirp z-transform function generator
+   ZoomFFT - Zoom FFT function generator
+   czt_points - Output the z-plane points sampled by a chirp z-transform
+
+The functions are simpler to use than the classes, but are less efficient when
+using the same transform on many arrays of the same length, since they
+repeatedly generate the same chirp signal with every call.  In these cases,
+use the classes to create a reusable function instead.
+
+"""
+
+from . import _sigtools, windows
+from ._waveforms import *
+from ._max_len_seq import max_len_seq
+from ._upfirdn import upfirdn
+
+from ._spline import (
+    cspline2d,
+    qspline2d,
+    sepfir2d,
+    symiirorder1,
+    symiirorder2,
+)
+
+from ._bsplines import *
+from ._filter_design import *
+from ._fir_filter_design import *
+from ._ltisys import *
+from ._lti_conversion import *
+from ._signaltools import *
+from ._savitzky_golay import savgol_coeffs, savgol_filter
+from ._spectral_py import *
+from ._short_time_fft import *
+from ._wavelets import *
+from ._peak_finding import *
+from ._czt import *
+from .windows import get_window  # keep this one in signal namespace
+
+# Deprecated namespaces, to be removed in v2.0.0
+from . import (
+    bsplines, filter_design, fir_filter_design, lti_conversion, ltisys,
+    spectral, signaltools, waveforms, wavelets, spline
+)
+
+__all__ = [
+    s for s in dir() if not s.startswith("_")
+]
+
+from scipy._lib._testutils import PytestTester
+test = PytestTester(__name__)
+del PytestTester

venv/lib/python3.10/site-packages/scipy/signal/_max_len_seq.py

@@ -0,0 +1,139 @@
+# Author: Eric Larson
+# 2014
+
+"""Tools for MLS generation"""
+
+import numpy as np
+
+from ._max_len_seq_inner import _max_len_seq_inner
+
+__all__ = ['max_len_seq']
+
+
+# These are definitions of linear shift register taps for use in max_len_seq()
+_mls_taps = {2: [1], 3: [2], 4: [3], 5: [3], 6: [5], 7: [6], 8: [7, 6, 1],
+             9: [5], 10: [7], 11: [9], 12: [11, 10, 4], 13: [12, 11, 8],
+             14: [13, 12, 2], 15: [14], 16: [15, 13, 4], 17: [14],
+             18: [11], 19: [18, 17, 14], 20: [17], 21: [19], 22: [21],
+             23: [18], 24: [23, 22, 17], 25: [22], 26: [25, 24, 20],
+             27: [26, 25, 22], 28: [25], 29: [27], 30: [29, 28, 7],
+             31: [28], 32: [31, 30, 10]}
+
+def max_len_seq(nbits, state=None, length=None, taps=None):
+    """
+    Maximum length sequence (MLS) generator.
+
+    Parameters
+    ----------
+    nbits : int
+        Number of bits to use. Length of the resulting sequence will
+        be ``(2**nbits) - 1``. Note that generating long sequences
+        (e.g., greater than ``nbits == 16``) can take a long time.
+    state : array_like, optional
+        If array, must be of length ``nbits``, and will be cast to binary
+        (bool) representation. If None, a seed of ones will be used,
+        producing a repeatable representation. If ``state`` is all
+        zeros, an error is raised as this is invalid. Default: None.
+    length : int, optional
+        Number of samples to compute. If None, the entire length
+        ``(2**nbits) - 1`` is computed.
+    taps : array_like, optional
+        Polynomial taps to use (e.g., ``[7, 6, 1]`` for an 8-bit sequence).
+        If None, taps will be automatically selected (for up to
+        ``nbits == 32``).
+
+    Returns
+    -------
+    seq : array
+        Resulting MLS sequence of 0's and 1's.
+    state : array
+        The final state of the shift register.
+
+    Notes
+    -----
+    The algorithm for MLS generation is generically described in:
+
+        https://en.wikipedia.org/wiki/Maximum_length_sequence
+
+    The default values for taps are specifically taken from the first
+    option listed for each value of ``nbits`` in:
+
+        https://web.archive.org/web/20181001062252/http://www.newwaveinstruments.com/resources/articles/m_sequence_linear_feedback_shift_register_lfsr.htm
+
+    .. versionadded:: 0.15.0
+
+    Examples
+    --------
+    MLS uses binary convention:
+
+    >>> from scipy.signal import max_len_seq
+    >>> max_len_seq(4)[0]
+    array([1, 1, 1, 1, 0, 1, 0, 1, 1, 0, 0, 1, 0, 0, 0], dtype=int8)
+
+    MLS has a white spectrum (except for DC):
+
+    >>> import numpy as np
+    >>> import matplotlib.pyplot as plt
+    >>> from numpy.fft import fft, ifft, fftshift, fftfreq
+    >>> seq = max_len_seq(6)[0]*2-1  # +1 and -1
+    >>> spec = fft(seq)
+    >>> N = len(seq)
+    >>> plt.plot(fftshift(fftfreq(N)), fftshift(np.abs(spec)), '.-')
+    >>> plt.margins(0.1, 0.1)
+    >>> plt.grid(True)
+    >>> plt.show()
+
+    Circular autocorrelation of MLS is an impulse:
+
+    >>> acorrcirc = ifft(spec * np.conj(spec)).real
+    >>> plt.figure()
+    >>> plt.plot(np.arange(-N/2+1, N/2+1), fftshift(acorrcirc), '.-')
+    >>> plt.margins(0.1, 0.1)
+    >>> plt.grid(True)
+    >>> plt.show()
+
+    Linear autocorrelation of MLS is approximately an impulse:
+
+    >>> acorr = np.correlate(seq, seq, 'full')
+    >>> plt.figure()
+    >>> plt.plot(np.arange(-N+1, N), acorr, '.-')
+    >>> plt.margins(0.1, 0.1)
+    >>> plt.grid(True)
+    >>> plt.show()
+
+    """
+    taps_dtype = np.int32 if np.intp().itemsize == 4 else np.int64
+    if taps is None:
+        if nbits not in _mls_taps:
+            known_taps = np.array(list(_mls_taps.keys()))
+            raise ValueError(f'nbits must be between {known_taps.min()} and '
+                             f'{known_taps.max()} if taps is None')
+        taps = np.array(_mls_taps[nbits], taps_dtype)
+    else:
+        taps = np.unique(np.array(taps, taps_dtype))[::-1]
+        if np.any(taps < 0) or np.any(taps > nbits) or taps.size < 1:
+            raise ValueError('taps must be non-empty with values between '
+                             'zero and nbits (inclusive)')
+        taps = np.array(taps)  # needed for Cython and Pythran
+    n_max = (2**nbits) - 1
+    if length is None:
+        length = n_max
+    else:
+        length = int(length)
+        if length < 0:
+            raise ValueError('length must be greater than or equal to 0')
+    # We use int8 instead of bool here because NumPy arrays of bools
+    # don't seem to work nicely with Cython
+    if state is None:
+        state = np.ones(nbits, dtype=np.int8, order='c')
+    else:
+        # makes a copy if need be, ensuring it's 0's and 1's
+        state = np.array(state, dtype=bool, order='c').astype(np.int8)
+    if state.ndim != 1 or state.size != nbits:
+        raise ValueError('state must be a 1-D array of size nbits')
+    if np.all(state == 0):
+        raise ValueError('state must not be all zeros')
+
+    seq = np.empty(length, dtype=np.int8, order='c')
+    state = _max_len_seq_inner(taps, state, nbits, length, seq)
+    return seq, state

venv/lib/python3.10/site-packages/scipy/signal/_waveforms.py

@@ -0,0 +1,672 @@
+# Author: Travis Oliphant
+# 2003
+#
+# Feb. 2010: Updated by Warren Weckesser:
+#   Rewrote much of chirp()
+#   Added sweep_poly()
+import numpy as np
+from numpy import asarray, zeros, place, nan, mod, pi, extract, log, sqrt, \
+    exp, cos, sin, polyval, polyint
+
+
+__all__ = ['sawtooth', 'square', 'gausspulse', 'chirp', 'sweep_poly',
+           'unit_impulse']
+
+
+def sawtooth(t, width=1):
+    """
+    Return a periodic sawtooth or triangle waveform.
+
+    The sawtooth waveform has a period ``2*pi``, rises from -1 to 1 on the
+    interval 0 to ``width*2*pi``, then drops from 1 to -1 on the interval
+    ``width*2*pi`` to ``2*pi``. `width` must be in the interval [0, 1].
+
+    Note that this is not band-limited.  It produces an infinite number
+    of harmonics, which are aliased back and forth across the frequency
+    spectrum.
+
+    Parameters
+    ----------
+    t : array_like
+        Time.
+    width : array_like, optional
+        Width of the rising ramp as a proportion of the total cycle.
+        Default is 1, producing a rising ramp, while 0 produces a falling
+        ramp.  `width` = 0.5 produces a triangle wave.
+        If an array, causes wave shape to change over time, and must be the
+        same length as t.
+
+    Returns
+    -------
+    y : ndarray
+        Output array containing the sawtooth waveform.
+
+    Examples
+    --------
+    A 5 Hz waveform sampled at 500 Hz for 1 second:
+
+    >>> import numpy as np
+    >>> from scipy import signal
+    >>> import matplotlib.pyplot as plt
+    >>> t = np.linspace(0, 1, 500)
+    >>> plt.plot(t, signal.sawtooth(2 * np.pi * 5 * t))
+
+    """
+    t, w = asarray(t), asarray(width)
+    w = asarray(w + (t - t))
+    t = asarray(t + (w - w))
+    if t.dtype.char in ['fFdD']:
+        ytype = t.dtype.char
+    else:
+        ytype = 'd'
+    y = zeros(t.shape, ytype)
+
+    # width must be between 0 and 1 inclusive
+    mask1 = (w > 1) | (w < 0)
+    place(y, mask1, nan)
+
+    # take t modulo 2*pi
+    tmod = mod(t, 2 * pi)
+
+    # on the interval 0 to width*2*pi function is
+    #  tmod / (pi*w) - 1
+    mask2 = (1 - mask1) & (tmod < w * 2 * pi)
+    tsub = extract(mask2, tmod)
+    wsub = extract(mask2, w)
+    place(y, mask2, tsub / (pi * wsub) - 1)
+
+    # on the interval width*2*pi to 2*pi function is
+    #  (pi*(w+1)-tmod) / (pi*(1-w))
+
+    mask3 = (1 - mask1) & (1 - mask2)
+    tsub = extract(mask3, tmod)
+    wsub = extract(mask3, w)
+    place(y, mask3, (pi * (wsub + 1) - tsub) / (pi * (1 - wsub)))
+    return y
+
+
+def square(t, duty=0.5):
+    """
+    Return a periodic square-wave waveform.
+
+    The square wave has a period ``2*pi``, has value +1 from 0 to
+    ``2*pi*duty`` and -1 from ``2*pi*duty`` to ``2*pi``. `duty` must be in
+    the interval [0,1].
+
+    Note that this is not band-limited.  It produces an infinite number
+    of harmonics, which are aliased back and forth across the frequency
+    spectrum.
+
+    Parameters
+    ----------
+    t : array_like
+        The input time array.
+    duty : array_like, optional
+        Duty cycle.  Default is 0.5 (50% duty cycle).
+        If an array, causes wave shape to change over time, and must be the
+        same length as t.
+
+    Returns
+    -------
+    y : ndarray
+        Output array containing the square waveform.
+
+    Examples
+    --------
+    A 5 Hz waveform sampled at 500 Hz for 1 second:
+
+    >>> import numpy as np
+    >>> from scipy import signal
+    >>> import matplotlib.pyplot as plt
+    >>> t = np.linspace(0, 1, 500, endpoint=False)
+    >>> plt.plot(t, signal.square(2 * np.pi * 5 * t))
+    >>> plt.ylim(-2, 2)
+
+    A pulse-width modulated sine wave:
+
+    >>> plt.figure()
+    >>> sig = np.sin(2 * np.pi * t)
+    >>> pwm = signal.square(2 * np.pi * 30 * t, duty=(sig + 1)/2)
+    >>> plt.subplot(2, 1, 1)
+    >>> plt.plot(t, sig)
+    >>> plt.subplot(2, 1, 2)
+    >>> plt.plot(t, pwm)
+    >>> plt.ylim(-1.5, 1.5)
+
+    """
+    t, w = asarray(t), asarray(duty)
+    w = asarray(w + (t - t))
+    t = asarray(t + (w - w))
+    if t.dtype.char in ['fFdD']:
+        ytype = t.dtype.char
+    else:
+        ytype = 'd'
+
+    y = zeros(t.shape, ytype)
+
+    # width must be between 0 and 1 inclusive
+    mask1 = (w > 1) | (w < 0)
+    place(y, mask1, nan)
+
+    # on the interval 0 to duty*2*pi function is 1
+    tmod = mod(t, 2 * pi)
+    mask2 = (1 - mask1) & (tmod < w * 2 * pi)
+    place(y, mask2, 1)
+
+    # on the interval duty*2*pi to 2*pi function is
+    #  (pi*(w+1)-tmod) / (pi*(1-w))
+    mask3 = (1 - mask1) & (1 - mask2)
+    place(y, mask3, -1)
+    return y
+
+
+def gausspulse(t, fc=1000, bw=0.5, bwr=-6, tpr=-60, retquad=False,
+               retenv=False):
+    """
+    Return a Gaussian modulated sinusoid:
+
+        ``exp(-a t^2) exp(1j*2*pi*fc*t).``
+
+    If `retquad` is True, then return the real and imaginary parts
+    (in-phase and quadrature).
+    If `retenv` is True, then return the envelope (unmodulated signal).
+    Otherwise, return the real part of the modulated sinusoid.
+
+    Parameters
+    ----------
+    t : ndarray or the string 'cutoff'
+        Input array.
+    fc : float, optional
+        Center frequency (e.g. Hz).  Default is 1000.
+    bw : float, optional
+        Fractional bandwidth in frequency domain of pulse (e.g. Hz).
+        Default is 0.5.
+    bwr : float, optional
+        Reference level at which fractional bandwidth is calculated (dB).
+        Default is -6.
+    tpr : float, optional
+        If `t` is 'cutoff', then the function returns the cutoff
+        time for when the pulse amplitude falls below `tpr` (in dB).
+        Default is -60.
+    retquad : bool, optional
+        If True, return the quadrature (imaginary) as well as the real part
+        of the signal.  Default is False.
+    retenv : bool, optional
+        If True, return the envelope of the signal.  Default is False.
+
+    Returns
+    -------
+    yI : ndarray
+        Real part of signal.  Always returned.
+    yQ : ndarray
+        Imaginary part of signal.  Only returned if `retquad` is True.
+    yenv : ndarray
+        Envelope of signal.  Only returned if `retenv` is True.
+
+    See Also
+    --------
+    scipy.signal.morlet
+
+    Examples
+    --------
+    Plot real component, imaginary component, and envelope for a 5 Hz pulse,
+    sampled at 100 Hz for 2 seconds:
+
+    >>> import numpy as np
+    >>> from scipy import signal
+    >>> import matplotlib.pyplot as plt
+    >>> t = np.linspace(-1, 1, 2 * 100, endpoint=False)
+    >>> i, q, e = signal.gausspulse(t, fc=5, retquad=True, retenv=True)
+    >>> plt.plot(t, i, t, q, t, e, '--')
+
+    """
+    if fc < 0:
+        raise ValueError("Center frequency (fc=%.2f) must be >=0." % fc)
+    if bw <= 0:
+        raise ValueError("Fractional bandwidth (bw=%.2f) must be > 0." % bw)
+    if bwr >= 0:
+        raise ValueError("Reference level for bandwidth (bwr=%.2f) must "
+                         "be < 0 dB" % bwr)
+
+    # exp(-a t^2) <->  sqrt(pi/a) exp(-pi^2/a * f^2)  = g(f)
+
+    ref = pow(10.0, bwr / 20.0)
+    # fdel = fc*bw/2:  g(fdel) = ref --- solve this for a
+    #
+    # pi^2/a * fc^2 * bw^2 /4=-log(ref)
+    a = -(pi * fc * bw) ** 2 / (4.0 * log(ref))
+
+    if isinstance(t, str):
+        if t == 'cutoff':  # compute cut_off point
+            #  Solve exp(-a tc**2) = tref  for tc
+            #   tc = sqrt(-log(tref) / a) where tref = 10^(tpr/20)
+            if tpr >= 0:
+                raise ValueError("Reference level for time cutoff must "
+                                 "be < 0 dB")
+            tref = pow(10.0, tpr / 20.0)
+            return sqrt(-log(tref) / a)
+        else:
+            raise ValueError("If `t` is a string, it must be 'cutoff'")
+
+    yenv = exp(-a * t * t)
+    yI = yenv * cos(2 * pi * fc * t)
+    yQ = yenv * sin(2 * pi * fc * t)
+    if not retquad and not retenv:
+        return yI
+    if not retquad and retenv:
+        return yI, yenv
+    if retquad and not retenv:
+        return yI, yQ
+    if retquad and retenv:
+        return yI, yQ, yenv
+
+
+def chirp(t, f0, t1, f1, method='linear', phi=0, vertex_zero=True):
+    """Frequency-swept cosine generator.
+
+    In the following, 'Hz' should be interpreted as 'cycles per unit';
+    there is no requirement here that the unit is one second.  The
+    important distinction is that the units of rotation are cycles, not
+    radians. Likewise, `t` could be a measurement of space instead of time.
+
+    Parameters
+    ----------
+    t : array_like
+        Times at which to evaluate the waveform.
+    f0 : float
+        Frequency (e.g. Hz) at time t=0.
+    t1 : float
+        Time at which `f1` is specified.
+    f1 : float
+        Frequency (e.g. Hz) of the waveform at time `t1`.
+    method : {'linear', 'quadratic', 'logarithmic', 'hyperbolic'}, optional
+        Kind of frequency sweep.  If not given, `linear` is assumed.  See
+        Notes below for more details.
+    phi : float, optional
+        Phase offset, in degrees. Default is 0.
+    vertex_zero : bool, optional
+        This parameter is only used when `method` is 'quadratic'.
+        It determines whether the vertex of the parabola that is the graph
+        of the frequency is at t=0 or t=t1.
+
+    Returns
+    -------
+    y : ndarray
+        A numpy array containing the signal evaluated at `t` with the
+        requested time-varying frequency.  More precisely, the function
+        returns ``cos(phase + (pi/180)*phi)`` where `phase` is the integral
+        (from 0 to `t`) of ``2*pi*f(t)``. ``f(t)`` is defined below.
+
+    See Also
+    --------
+    sweep_poly
+
+    Notes
+    -----
+    There are four options for the `method`.  The following formulas give
+    the instantaneous frequency (in Hz) of the signal generated by
+    `chirp()`.  For convenience, the shorter names shown below may also be
+    used.
+
+    linear, lin, li:
+
+        ``f(t) = f0 + (f1 - f0) * t / t1``
+
+    quadratic, quad, q:
+
+        The graph of the frequency f(t) is a parabola through (0, f0) and
+        (t1, f1).  By default, the vertex of the parabola is at (0, f0).
+        If `vertex_zero` is False, then the vertex is at (t1, f1).  The
+        formula is:
+
+        if vertex_zero is True:
+
+            ``f(t) = f0 + (f1 - f0) * t**2 / t1**2``
+
+        else:
+
+            ``f(t) = f1 - (f1 - f0) * (t1 - t)**2 / t1**2``
+
+        To use a more general quadratic function, or an arbitrary
+        polynomial, use the function `scipy.signal.sweep_poly`.
+
+    logarithmic, log, lo:
+
+        ``f(t) = f0 * (f1/f0)**(t/t1)``
+
+        f0 and f1 must be nonzero and have the same sign.
+
+        This signal is also known as a geometric or exponential chirp.
+
+    hyperbolic, hyp:
+
+        ``f(t) = f0*f1*t1 / ((f0 - f1)*t + f1*t1)``
+
+        f0 and f1 must be nonzero.
+
+    Examples
+    --------
+    The following will be used in the examples:
+
+    >>> import numpy as np
+    >>> from scipy.signal import chirp, spectrogram
+    >>> import matplotlib.pyplot as plt
+
+    For the first example, we'll plot the waveform for a linear chirp
+    from 6 Hz to 1 Hz over 10 seconds:
+
+    >>> t = np.linspace(0, 10, 1500)
+    >>> w = chirp(t, f0=6, f1=1, t1=10, method='linear')
+    >>> plt.plot(t, w)
+    >>> plt.title("Linear Chirp, f(0)=6, f(10)=1")
+    >>> plt.xlabel('t (sec)')
+    >>> plt.show()
+
+    For the remaining examples, we'll use higher frequency ranges,
+    and demonstrate the result using `scipy.signal.spectrogram`.
+    We'll use a 4 second interval sampled at 7200 Hz.
+
+    >>> fs = 7200
+    >>> T = 4
+    >>> t = np.arange(0, int(T*fs)) / fs
+
+    We'll use this function to plot the spectrogram in each example.
+
+    >>> def plot_spectrogram(title, w, fs):
+    ...     ff, tt, Sxx = spectrogram(w, fs=fs, nperseg=256, nfft=576)
+    ...     fig, ax = plt.subplots()
+    ...     ax.pcolormesh(tt, ff[:145], Sxx[:145], cmap='gray_r',
+    ...                   shading='gouraud')
+    ...     ax.set_title(title)
+    ...     ax.set_xlabel('t (sec)')
+    ...     ax.set_ylabel('Frequency (Hz)')
+    ...     ax.grid(True)
+    ...
+
+    Quadratic chirp from 1500 Hz to 250 Hz
+    (vertex of the parabolic curve of the frequency is at t=0):
+
+    >>> w = chirp(t, f0=1500, f1=250, t1=T, method='quadratic')
+    >>> plot_spectrogram(f'Quadratic Chirp, f(0)=1500, f({T})=250', w, fs)
+    >>> plt.show()
+
+    Quadratic chirp from 1500 Hz to 250 Hz
+    (vertex of the parabolic curve of the frequency is at t=T):
+
+    >>> w = chirp(t, f0=1500, f1=250, t1=T, method='quadratic',
+    ...           vertex_zero=False)
+    >>> plot_spectrogram(f'Quadratic Chirp, f(0)=1500, f({T})=250\\n' +
+    ...                  '(vertex_zero=False)', w, fs)
+    >>> plt.show()
+
+    Logarithmic chirp from 1500 Hz to 250 Hz:
+
+    >>> w = chirp(t, f0=1500, f1=250, t1=T, method='logarithmic')
+    >>> plot_spectrogram(f'Logarithmic Chirp, f(0)=1500, f({T})=250', w, fs)
+    >>> plt.show()
+
+    Hyperbolic chirp from 1500 Hz to 250 Hz:
+
+    >>> w = chirp(t, f0=1500, f1=250, t1=T, method='hyperbolic')
+    >>> plot_spectrogram(f'Hyperbolic Chirp, f(0)=1500, f({T})=250', w, fs)
+    >>> plt.show()
+
+    """
+    # 'phase' is computed in _chirp_phase, to make testing easier.
+    phase = _chirp_phase(t, f0, t1, f1, method, vertex_zero)
+    # Convert  phi to radians.
+    phi *= pi / 180
+    return cos(phase + phi)
+
+
+def _chirp_phase(t, f0, t1, f1, method='linear', vertex_zero=True):
+    """
+    Calculate the phase used by `chirp` to generate its output.
+
+    See `chirp` for a description of the arguments.
+
+    """
+    t = asarray(t)
+    f0 = float(f0)
+    t1 = float(t1)
+    f1 = float(f1)
+    if method in ['linear', 'lin', 'li']:
+        beta = (f1 - f0) / t1
+        phase = 2 * pi * (f0 * t + 0.5 * beta * t * t)
+
+    elif method in ['quadratic', 'quad', 'q']:
+        beta = (f1 - f0) / (t1 ** 2)
+        if vertex_zero:
+            phase = 2 * pi * (f0 * t + beta * t ** 3 / 3)
+        else:
+            phase = 2 * pi * (f1 * t + beta * ((t1 - t) ** 3 - t1 ** 3) / 3)
+
+    elif method in ['logarithmic', 'log', 'lo']:
+        if f0 * f1 <= 0.0:
+            raise ValueError("For a logarithmic chirp, f0 and f1 must be "
+                             "nonzero and have the same sign.")
+        if f0 == f1:
+            phase = 2 * pi * f0 * t
+        else:
+            beta = t1 / log(f1 / f0)
+            phase = 2 * pi * beta * f0 * (pow(f1 / f0, t / t1) - 1.0)
+
+    elif method in ['hyperbolic', 'hyp']:
+        if f0 == 0 or f1 == 0:
+            raise ValueError("For a hyperbolic chirp, f0 and f1 must be "
+                             "nonzero.")
+        if f0 == f1:
+            # Degenerate case: constant frequency.
+            phase = 2 * pi * f0 * t
+        else:
+            # Singular point: the instantaneous frequency blows up
+            # when t == sing.
+            sing = -f1 * t1 / (f0 - f1)
+            phase = 2 * pi * (-sing * f0) * log(np.abs(1 - t/sing))
+
+    else:
+        raise ValueError("method must be 'linear', 'quadratic', 'logarithmic',"
+                         " or 'hyperbolic', but a value of %r was given."
+                         % method)
+
+    return phase
+
+
+def sweep_poly(t, poly, phi=0):
+    """
+    Frequency-swept cosine generator, with a time-dependent frequency.
+
+    This function generates a sinusoidal function whose instantaneous
+    frequency varies with time.  The frequency at time `t` is given by
+    the polynomial `poly`.
+
+    Parameters
+    ----------
+    t : ndarray
+        Times at which to evaluate the waveform.
+    poly : 1-D array_like or instance of numpy.poly1d
+        The desired frequency expressed as a polynomial.  If `poly` is
+        a list or ndarray of length n, then the elements of `poly` are
+        the coefficients of the polynomial, and the instantaneous
+        frequency is
+
+          ``f(t) = poly[0]*t**(n-1) + poly[1]*t**(n-2) + ... + poly[n-1]``
+
+        If `poly` is an instance of numpy.poly1d, then the
+        instantaneous frequency is
+
+          ``f(t) = poly(t)``
+
+    phi : float, optional
+        Phase offset, in degrees, Default: 0.
+
+    Returns
+    -------
+    sweep_poly : ndarray
+        A numpy array containing the signal evaluated at `t` with the
+        requested time-varying frequency.  More precisely, the function
+        returns ``cos(phase + (pi/180)*phi)``, where `phase` is the integral
+        (from 0 to t) of ``2 * pi * f(t)``; ``f(t)`` is defined above.
+
+    See Also
+    --------
+    chirp
+
+    Notes
+    -----
+    .. versionadded:: 0.8.0
+
+    If `poly` is a list or ndarray of length `n`, then the elements of
+    `poly` are the coefficients of the polynomial, and the instantaneous
+    frequency is:
+
+        ``f(t) = poly[0]*t**(n-1) + poly[1]*t**(n-2) + ... + poly[n-1]``
+
+    If `poly` is an instance of `numpy.poly1d`, then the instantaneous
+    frequency is:
+
+          ``f(t) = poly(t)``
+
+    Finally, the output `s` is:
+
+        ``cos(phase + (pi/180)*phi)``
+
+    where `phase` is the integral from 0 to `t` of ``2 * pi * f(t)``,
+    ``f(t)`` as defined above.
+
+    Examples
+    --------
+    Compute the waveform with instantaneous frequency::
+
+        f(t) = 0.025*t**3 - 0.36*t**2 + 1.25*t + 2
+
+    over the interval 0 <= t <= 10.
+
+    >>> import numpy as np
+    >>> from scipy.signal import sweep_poly
+    >>> p = np.poly1d([0.025, -0.36, 1.25, 2.0])
+    >>> t = np.linspace(0, 10, 5001)
+    >>> w = sweep_poly(t, p)
+
+    Plot it:
+
+    >>> import matplotlib.pyplot as plt
+    >>> plt.subplot(2, 1, 1)
+    >>> plt.plot(t, w)
+    >>> plt.title("Sweep Poly\\nwith frequency " +
+    ...           "$f(t) = 0.025t^3 - 0.36t^2 + 1.25t + 2$")
+    >>> plt.subplot(2, 1, 2)
+    >>> plt.plot(t, p(t), 'r', label='f(t)')
+    >>> plt.legend()
+    >>> plt.xlabel('t')
+    >>> plt.tight_layout()
+    >>> plt.show()
+
+    """
+    # 'phase' is computed in _sweep_poly_phase, to make testing easier.
+    phase = _sweep_poly_phase(t, poly)
+    # Convert to radians.
+    phi *= pi / 180
+    return cos(phase + phi)
+
+
+def _sweep_poly_phase(t, poly):
+    """
+    Calculate the phase used by sweep_poly to generate its output.
+
+    See `sweep_poly` for a description of the arguments.
+
+    """
+    # polyint handles lists, ndarrays and instances of poly1d automatically.
+    intpoly = polyint(poly)
+    phase = 2 * pi * polyval(intpoly, t)
+    return phase
+
+
+def unit_impulse(shape, idx=None, dtype=float):
+    """
+    Unit impulse signal (discrete delta function) or unit basis vector.
+
+    Parameters
+    ----------
+    shape : int or tuple of int
+        Number of samples in the output (1-D), or a tuple that represents the
+        shape of the output (N-D).
+    idx : None or int or tuple of int or 'mid', optional
+        Index at which the value is 1.  If None, defaults to the 0th element.
+        If ``idx='mid'``, the impulse will be centered at ``shape // 2`` in
+        all dimensions.  If an int, the impulse will be at `idx` in all
+        dimensions.
+    dtype : data-type, optional
+        The desired data-type for the array, e.g., ``numpy.int8``.  Default is
+        ``numpy.float64``.
+
+    Returns
+    -------
+    y : ndarray
+        Output array containing an impulse signal.
+
+    Notes
+    -----
+    The 1D case is also known as the Kronecker delta.
+
+    .. versionadded:: 0.19.0
+
+    Examples
+    --------
+    An impulse at the 0th element (:math:`\\delta[n]`):
+
+    >>> from scipy import signal
+    >>> signal.unit_impulse(8)
+    array([ 1.,  0.,  0.,  0.,  0.,  0.,  0.,  0.])
+
+    Impulse offset by 2 samples (:math:`\\delta[n-2]`):
+
+    >>> signal.unit_impulse(7, 2)
+    array([ 0.,  0.,  1.,  0.,  0.,  0.,  0.])
+
+    2-dimensional impulse, centered:
+
+    >>> signal.unit_impulse((3, 3), 'mid')
+    array([[ 0.,  0.,  0.],
+           [ 0.,  1.,  0.],
+           [ 0.,  0.,  0.]])
+
+    Impulse at (2, 2), using broadcasting:
+
+    >>> signal.unit_impulse((4, 4), 2)
+    array([[ 0.,  0.,  0.,  0.],
+           [ 0.,  0.,  0.,  0.],
+           [ 0.,  0.,  1.,  0.],
+           [ 0.,  0.,  0.,  0.]])
+
+    Plot the impulse response of a 4th-order Butterworth lowpass filter:
+
+    >>> imp = signal.unit_impulse(100, 'mid')
+    >>> b, a = signal.butter(4, 0.2)
+    >>> response = signal.lfilter(b, a, imp)
+
+    >>> import numpy as np
+    >>> import matplotlib.pyplot as plt
+    >>> plt.plot(np.arange(-50, 50), imp)
+    >>> plt.plot(np.arange(-50, 50), response)
+    >>> plt.margins(0.1, 0.1)
+    >>> plt.xlabel('Time [samples]')
+    >>> plt.ylabel('Amplitude')
+    >>> plt.grid(True)
+    >>> plt.show()
+
+    """
+    out = zeros(shape, dtype)
+
+    shape = np.atleast_1d(shape)
+
+    if idx is None:
+        idx = (0,) * len(shape)
+    elif idx == 'mid':
+        idx = tuple(shape // 2)
+    elif not hasattr(idx, "__iter__"):
+        idx = (idx,) * len(shape)
+
+    out[idx] = 1
+    return out

venv/lib/python3.10/site-packages/scipy/signal/filter_design.py

@@ -0,0 +1,34 @@
+# This file is not meant for public use and will be removed in SciPy v2.0.0.
+# Use the `scipy.signal` namespace for importing the functions
+# included below.
+
+from scipy._lib.deprecation import _sub_module_deprecation
+
+__all__ = [  # noqa: F822
+    'findfreqs', 'freqs', 'freqz', 'tf2zpk', 'zpk2tf', 'normalize',
+    'lp2lp', 'lp2hp', 'lp2bp', 'lp2bs', 'bilinear', 'iirdesign',
+    'iirfilter', 'butter', 'cheby1', 'cheby2', 'ellip', 'bessel',
+    'band_stop_obj', 'buttord', 'cheb1ord', 'cheb2ord', 'ellipord',
+    'buttap', 'cheb1ap', 'cheb2ap', 'ellipap', 'besselap',
+    'BadCoefficients', 'freqs_zpk', 'freqz_zpk',
+    'tf2sos', 'sos2tf', 'zpk2sos', 'sos2zpk', 'group_delay',
+    'sosfreqz', 'iirnotch', 'iirpeak', 'bilinear_zpk',
+    'lp2lp_zpk', 'lp2hp_zpk', 'lp2bp_zpk', 'lp2bs_zpk',
+    'gammatone', 'iircomb',
+    'atleast_1d', 'poly', 'polyval', 'roots', 'resize', 'absolute',
+    'tan', 'log10', 'arcsinh', 'exp', 'arccosh',
+    'ceil', 'conjugate', 'append', 'prod', 'full', 'array', 'mintypecode',
+    'npp_polyval', 'polyvalfromroots', 'optimize', 'sp_fft', 'comb',
+    'float_factorial', 'abs', 'maxflat', 'yulewalk',
+    'EPSILON', 'filter_dict', 'band_dict', 'bessel_norms'
+]
+
+
+def __dir__():
+    return __all__
+
+
+def __getattr__(name):
+    return _sub_module_deprecation(sub_package="signal", module="filter_design",
+                                   private_modules=["_filter_design"], all=__all__,
+                                   attribute=name)