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env-llmeval/lib/python3.10/site-packages/scipy/fft/tests/test_fftlog.py

@@ -0,0 +1,169 @@
+import warnings
+import numpy as np
+import pytest
+
+from scipy.fft._fftlog import fht, ifht, fhtoffset
+from scipy.special import poch
+
+from scipy.conftest import array_api_compatible
+from scipy._lib._array_api import xp_assert_close
+
+pytestmark = array_api_compatible
+
+
+def test_fht_agrees_with_fftlog(xp):
+    # check that fht numerically agrees with the output from Fortran FFTLog,
+    # the results were generated with the provided `fftlogtest` program,
+    # after fixing how the k array is generated (divide range by n-1, not n)
+
+    # test function, analytical Hankel transform is of the same form
+    def f(r, mu):
+        return r**(mu+1)*np.exp(-r**2/2)
+
+    r = np.logspace(-4, 4, 16)
+
+    dln = np.log(r[1]/r[0])
+    mu = 0.3
+    offset = 0.0
+    bias = 0.0
+
+    a = xp.asarray(f(r, mu))
+
+    # test 1: compute as given
+    ours = fht(a, dln, mu, offset=offset, bias=bias)
+    theirs = [-0.1159922613593045E-02, +0.1625822618458832E-02,
+              -0.1949518286432330E-02, +0.3789220182554077E-02,
+              +0.5093959119952945E-03, +0.2785387803618774E-01,
+              +0.9944952700848897E-01, +0.4599202164586588E+00,
+              +0.3157462160881342E+00, -0.8201236844404755E-03,
+              -0.7834031308271878E-03, +0.3931444945110708E-03,
+              -0.2697710625194777E-03, +0.3568398050238820E-03,
+              -0.5554454827797206E-03, +0.8286331026468585E-03]
+    theirs = xp.asarray(theirs, dtype=xp.float64)
+    xp_assert_close(ours, theirs)
+
+    # test 2: change to optimal offset
+    offset = fhtoffset(dln, mu, bias=bias)
+    ours = fht(a, dln, mu, offset=offset, bias=bias)
+    theirs = [+0.4353768523152057E-04, -0.9197045663594285E-05,
+              +0.3150140927838524E-03, +0.9149121960963704E-03,
+              +0.5808089753959363E-02, +0.2548065256377240E-01,
+              +0.1339477692089897E+00, +0.4821530509479356E+00,
+              +0.2659899781579785E+00, -0.1116475278448113E-01,
+              +0.1791441617592385E-02, -0.4181810476548056E-03,
+              +0.1314963536765343E-03, -0.5422057743066297E-04,
+              +0.3208681804170443E-04, -0.2696849476008234E-04]
+    theirs = xp.asarray(theirs, dtype=xp.float64)
+    xp_assert_close(ours, theirs)
+
+    # test 3: positive bias
+    bias = 0.8
+    offset = fhtoffset(dln, mu, bias=bias)
+    ours = fht(a, dln, mu, offset=offset, bias=bias)
+    theirs = [-7.3436673558316850E+00, +0.1710271207817100E+00,
+              +0.1065374386206564E+00, -0.5121739602708132E-01,
+              +0.2636649319269470E-01, +0.1697209218849693E-01,
+              +0.1250215614723183E+00, +0.4739583261486729E+00,
+              +0.2841149874912028E+00, -0.8312764741645729E-02,
+              +0.1024233505508988E-02, -0.1644902767389120E-03,
+              +0.3305775476926270E-04, -0.7786993194882709E-05,
+              +0.1962258449520547E-05, -0.8977895734909250E-06]
+    theirs = xp.asarray(theirs, dtype=xp.float64)
+    xp_assert_close(ours, theirs)
+
+    # test 4: negative bias
+    bias = -0.8
+    offset = fhtoffset(dln, mu, bias=bias)
+    ours = fht(a, dln, mu, offset=offset, bias=bias)
+    theirs = [+0.8985777068568745E-05, +0.4074898209936099E-04,
+              +0.2123969254700955E-03, +0.1009558244834628E-02,
+              +0.5131386375222176E-02, +0.2461678673516286E-01,
+              +0.1235812845384476E+00, +0.4719570096404403E+00,
+              +0.2893487490631317E+00, -0.1686570611318716E-01,
+              +0.2231398155172505E-01, -0.1480742256379873E-01,
+              +0.1692387813500801E+00, +0.3097490354365797E+00,
+              +2.7593607182401860E+00, 10.5251075070045800E+00]
+    theirs = xp.asarray(theirs, dtype=xp.float64)
+    xp_assert_close(ours, theirs)
+
+
+@pytest.mark.parametrize('optimal', [True, False])
+@pytest.mark.parametrize('offset', [0.0, 1.0, -1.0])
+@pytest.mark.parametrize('bias', [0, 0.1, -0.1])
+@pytest.mark.parametrize('n', [64, 63])
+def test_fht_identity(n, bias, offset, optimal, xp):
+    rng = np.random.RandomState(3491349965)
+
+    a = xp.asarray(rng.standard_normal(n))
+    dln = rng.uniform(-1, 1)
+    mu = rng.uniform(-2, 2)
+
+    if optimal:
+        offset = fhtoffset(dln, mu, initial=offset, bias=bias)
+
+    A = fht(a, dln, mu, offset=offset, bias=bias)
+    a_ = ifht(A, dln, mu, offset=offset, bias=bias)
+
+    xp_assert_close(a_, a)
+
+
+def test_fht_special_cases(xp):
+    rng = np.random.RandomState(3491349965)
+
+    a = xp.asarray(rng.standard_normal(64))
+    dln = rng.uniform(-1, 1)
+
+    # let x = (mu+1+q)/2, y = (mu+1-q)/2, M = {0, -1, -2, ...}
+
+    # case 1: x in M, y in M => well-defined transform
+    mu, bias = -4.0, 1.0
+    with warnings.catch_warnings(record=True) as record:
+        fht(a, dln, mu, bias=bias)
+        assert not record, 'fht warned about a well-defined transform'
+
+    # case 2: x not in M, y in M => well-defined transform
+    mu, bias = -2.5, 0.5
+    with warnings.catch_warnings(record=True) as record:
+        fht(a, dln, mu, bias=bias)
+        assert not record, 'fht warned about a well-defined transform'
+
+    # case 3: x in M, y not in M => singular transform
+    mu, bias = -3.5, 0.5
+    with pytest.warns(Warning) as record:
+        fht(a, dln, mu, bias=bias)
+        assert record, 'fht did not warn about a singular transform'
+
+    # case 4: x not in M, y in M => singular inverse transform
+    mu, bias = -2.5, 0.5
+    with pytest.warns(Warning) as record:
+        ifht(a, dln, mu, bias=bias)
+        assert record, 'ifht did not warn about a singular transform'
+
+
+@pytest.mark.parametrize('n', [64, 63])
+def test_fht_exact(n, xp):
+    rng = np.random.RandomState(3491349965)
+
+    # for a(r) a power law r^\gamma, the fast Hankel transform produces the
+    # exact continuous Hankel transform if biased with q = \gamma
+
+    mu = rng.uniform(0, 3)
+
+    # convergence of HT: -1-mu < gamma < 1/2
+    gamma = rng.uniform(-1-mu, 1/2)
+
+    r = np.logspace(-2, 2, n)
+    a = xp.asarray(r**gamma)
+
+    dln = np.log(r[1]/r[0])
+
+    offset = fhtoffset(dln, mu, initial=0.0, bias=gamma)
+
+    A = fht(a, dln, mu, offset=offset, bias=gamma)
+
+    k = np.exp(offset)/r[::-1]
+
+    # analytical result
+    At = xp.asarray((2/k)**gamma * poch((mu+1-gamma)/2, gamma))
+
+    xp_assert_close(A, At)

env-llmeval/lib/python3.10/site-packages/scipy/fft/tests/test_helper.py

@@ -0,0 +1,445 @@
+"""Includes test functions for fftpack.helper module
+
+Copied from fftpack.helper by Pearu Peterson, October 2005
+Modified for Array API, 2023
+
+"""
+from scipy.fft._helper import next_fast_len, _init_nd_shape_and_axes
+from numpy.testing import assert_equal
+from pytest import raises as assert_raises
+import pytest
+import numpy as np
+import sys
+from scipy.conftest import array_api_compatible
+from scipy._lib._array_api import xp_assert_close, SCIPY_DEVICE
+from scipy import fft
+
+pytestmark = [array_api_compatible, pytest.mark.usefixtures("skip_if_array_api")]
+skip_if_array_api = pytest.mark.skip_if_array_api
+
+_5_smooth_numbers = [
+    2, 3, 4, 5, 6, 8, 9, 10,
+    2 * 3 * 5,
+    2**3 * 3**5,
+    2**3 * 3**3 * 5**2,
+]
+
+def test_next_fast_len():
+    for n in _5_smooth_numbers:
+        assert_equal(next_fast_len(n), n)
+
+
+def _assert_n_smooth(x, n):
+    x_orig = x
+    if n < 2:
+        assert False
+
+    while True:
+        q, r = divmod(x, 2)
+        if r != 0:
+            break
+        x = q
+
+    for d in range(3, n+1, 2):
+        while True:
+            q, r = divmod(x, d)
+            if r != 0:
+                break
+            x = q
+
+    assert x == 1, \
+           f'x={x_orig} is not {n}-smooth, remainder={x}'
+
+
+@skip_if_array_api(np_only=True)
+class TestNextFastLen:
+
+    def test_next_fast_len(self):
+        np.random.seed(1234)
+
+        def nums():
+            yield from range(1, 1000)
+            yield 2**5 * 3**5 * 4**5 + 1
+
+        for n in nums():
+            m = next_fast_len(n)
+            _assert_n_smooth(m, 11)
+            assert m == next_fast_len(n, False)
+
+            m = next_fast_len(n, True)
+            _assert_n_smooth(m, 5)
+
+    def test_np_integers(self):
+        ITYPES = [np.int16, np.int32, np.int64, np.uint16, np.uint32, np.uint64]
+        for ityp in ITYPES:
+            x = ityp(12345)
+            testN = next_fast_len(x)
+            assert_equal(testN, next_fast_len(int(x)))
+
+    def testnext_fast_len_small(self):
+        hams = {
+            1: 1, 2: 2, 3: 3, 4: 4, 5: 5, 6: 6, 7: 8, 8: 8, 14: 15, 15: 15,
+            16: 16, 17: 18, 1021: 1024, 1536: 1536, 51200000: 51200000
+        }
+        for x, y in hams.items():
+            assert_equal(next_fast_len(x, True), y)
+
+    @pytest.mark.xfail(sys.maxsize < 2**32,
+                       reason="Hamming Numbers too large for 32-bit",
+                       raises=ValueError, strict=True)
+    def testnext_fast_len_big(self):
+        hams = {
+            510183360: 510183360, 510183360 + 1: 512000000,
+            511000000: 512000000,
+            854296875: 854296875, 854296875 + 1: 859963392,
+            196608000000: 196608000000, 196608000000 + 1: 196830000000,
+            8789062500000: 8789062500000, 8789062500000 + 1: 8796093022208,
+            206391214080000: 206391214080000,
+            206391214080000 + 1: 206624260800000,
+            470184984576000: 470184984576000,
+            470184984576000 + 1: 470715894135000,
+            7222041363087360: 7222041363087360,
+            7222041363087360 + 1: 7230196133913600,
+            # power of 5    5**23
+            11920928955078125: 11920928955078125,
+            11920928955078125 - 1: 11920928955078125,
+            # power of 3    3**34
+            16677181699666569: 16677181699666569,
+            16677181699666569 - 1: 16677181699666569,
+            # power of 2   2**54
+            18014398509481984: 18014398509481984,
+            18014398509481984 - 1: 18014398509481984,
+            # above this, int(ceil(n)) == int(ceil(n+1))
+            19200000000000000: 19200000000000000,
+            19200000000000000 + 1: 19221679687500000,
+            288230376151711744: 288230376151711744,
+            288230376151711744 + 1: 288325195312500000,
+            288325195312500000 - 1: 288325195312500000,
+            288325195312500000: 288325195312500000,
+            288325195312500000 + 1: 288555831593533440,
+        }
+        for x, y in hams.items():
+            assert_equal(next_fast_len(x, True), y)
+
+    def test_keyword_args(self):
+        assert next_fast_len(11, real=True) == 12
+        assert next_fast_len(target=7, real=False) == 7
+
+
+@skip_if_array_api(cpu_only=True)
+class Test_init_nd_shape_and_axes:
+
+    def test_py_0d_defaults(self, xp):
+        x = xp.asarray(4)
+        shape = None
+        axes = None
+
+        shape_expected = ()
+        axes_expected = []
+
+        shape_res, axes_res = _init_nd_shape_and_axes(x, shape, axes)
+
+        assert shape_res == shape_expected
+        assert axes_res == axes_expected
+
+    def test_xp_0d_defaults(self, xp):
+        x = xp.asarray(7.)
+        shape = None
+        axes = None
+
+        shape_expected = ()
+        axes_expected = []
+
+        shape_res, axes_res = _init_nd_shape_and_axes(x, shape, axes)
+
+        assert shape_res == shape_expected
+        assert axes_res == axes_expected
+
+    def test_py_1d_defaults(self, xp):
+        x = xp.asarray([1, 2, 3])
+        shape = None
+        axes = None
+
+        shape_expected = (3,)
+        axes_expected = [0]
+
+        shape_res, axes_res = _init_nd_shape_and_axes(x, shape, axes)
+
+        assert shape_res == shape_expected
+        assert axes_res == axes_expected
+
+    def test_xp_1d_defaults(self, xp):
+        x = xp.arange(0, 1, .1)
+        shape = None
+        axes = None
+
+        shape_expected = (10,)
+        axes_expected = [0]
+
+        shape_res, axes_res = _init_nd_shape_and_axes(x, shape, axes)
+
+        assert shape_res == shape_expected
+        assert axes_res == axes_expected
+
+    def test_py_2d_defaults(self, xp):
+        x = xp.asarray([[1, 2, 3, 4],
+                        [5, 6, 7, 8]])
+        shape = None
+        axes = None
+
+        shape_expected = (2, 4)
+        axes_expected = [0, 1]
+
+        shape_res, axes_res = _init_nd_shape_and_axes(x, shape, axes)
+
+        assert shape_res == shape_expected
+        assert axes_res == axes_expected
+
+    def test_xp_2d_defaults(self, xp):
+        x = xp.arange(0, 1, .1)
+        x = xp.reshape(x, (5, 2))
+        shape = None
+        axes = None
+
+        shape_expected = (5, 2)
+        axes_expected = [0, 1]
+
+        shape_res, axes_res = _init_nd_shape_and_axes(x, shape, axes)
+
+        assert shape_res == shape_expected
+        assert axes_res == axes_expected
+
+    def test_xp_5d_defaults(self, xp):
+        x = xp.zeros([6, 2, 5, 3, 4])
+        shape = None
+        axes = None
+
+        shape_expected = (6, 2, 5, 3, 4)
+        axes_expected = [0, 1, 2, 3, 4]
+
+        shape_res, axes_res = _init_nd_shape_and_axes(x, shape, axes)
+
+        assert shape_res == shape_expected
+        assert axes_res == axes_expected
+
+    def test_xp_5d_set_shape(self, xp):
+        x = xp.zeros([6, 2, 5, 3, 4])
+        shape = [10, -1, -1, 1, 4]
+        axes = None
+
+        shape_expected = (10, 2, 5, 1, 4)
+        axes_expected = [0, 1, 2, 3, 4]
+
+        shape_res, axes_res = _init_nd_shape_and_axes(x, shape, axes)
+
+        assert shape_res == shape_expected
+        assert axes_res == axes_expected
+
+    def test_xp_5d_set_axes(self, xp):
+        x = xp.zeros([6, 2, 5, 3, 4])
+        shape = None
+        axes = [4, 1, 2]
+
+        shape_expected = (4, 2, 5)
+        axes_expected = [4, 1, 2]
+
+        shape_res, axes_res = _init_nd_shape_and_axes(x, shape, axes)
+
+        assert shape_res == shape_expected
+        assert axes_res == axes_expected
+
+    def test_xp_5d_set_shape_axes(self, xp):
+        x = xp.zeros([6, 2, 5, 3, 4])
+        shape = [10, -1, 2]
+        axes = [1, 0, 3]
+
+        shape_expected = (10, 6, 2)
+        axes_expected = [1, 0, 3]
+
+        shape_res, axes_res = _init_nd_shape_and_axes(x, shape, axes)
+
+        assert shape_res == shape_expected
+        assert axes_res == axes_expected
+
+    def test_shape_axes_subset(self, xp):
+        x = xp.zeros((2, 3, 4, 5))
+        shape, axes = _init_nd_shape_and_axes(x, shape=(5, 5, 5), axes=None)
+
+        assert shape == (5, 5, 5)
+        assert axes == [1, 2, 3]
+
+    def test_errors(self, xp):
+        x = xp.zeros(1)
+        with assert_raises(ValueError, match="axes must be a scalar or "
+                           "iterable of integers"):
+            _init_nd_shape_and_axes(x, shape=None, axes=[[1, 2], [3, 4]])
+
+        with assert_raises(ValueError, match="axes must be a scalar or "
+                           "iterable of integers"):
+            _init_nd_shape_and_axes(x, shape=None, axes=[1., 2., 3., 4.])
+
+        with assert_raises(ValueError,
+                           match="axes exceeds dimensionality of input"):
+            _init_nd_shape_and_axes(x, shape=None, axes=[1])
+
+        with assert_raises(ValueError,
+                           match="axes exceeds dimensionality of input"):
+            _init_nd_shape_and_axes(x, shape=None, axes=[-2])
+
+        with assert_raises(ValueError,
+                           match="all axes must be unique"):
+            _init_nd_shape_and_axes(x, shape=None, axes=[0, 0])
+
+        with assert_raises(ValueError, match="shape must be a scalar or "
+                           "iterable of integers"):
+            _init_nd_shape_and_axes(x, shape=[[1, 2], [3, 4]], axes=None)
+
+        with assert_raises(ValueError, match="shape must be a scalar or "
+                           "iterable of integers"):
+            _init_nd_shape_and_axes(x, shape=[1., 2., 3., 4.], axes=None)
+
+        with assert_raises(ValueError,
+                           match="when given, axes and shape arguments"
+                           " have to be of the same length"):
+            _init_nd_shape_and_axes(xp.zeros([1, 1, 1, 1]),
+                                    shape=[1, 2, 3], axes=[1])
+
+        with assert_raises(ValueError,
+                           match="invalid number of data points"
+                           r" \(\[0\]\) specified"):
+            _init_nd_shape_and_axes(x, shape=[0], axes=None)
+
+        with assert_raises(ValueError,
+                           match="invalid number of data points"
+                           r" \(\[-2\]\) specified"):
+            _init_nd_shape_and_axes(x, shape=-2, axes=None)
+
+
+@skip_if_array_api('torch',
+                   reasons=['torch.fft not yet implemented by array-api-compat'])
+class TestFFTShift:
+
+    def test_definition(self, xp):
+        x = xp.asarray([0., 1, 2, 3, 4, -4, -3, -2, -1])
+        y = xp.asarray([-4., -3, -2, -1, 0, 1, 2, 3, 4])
+        xp_assert_close(fft.fftshift(x), y)
+        xp_assert_close(fft.ifftshift(y), x)
+        x = xp.asarray([0., 1, 2, 3, 4, -5, -4, -3, -2, -1])
+        y = xp.asarray([-5., -4, -3, -2, -1, 0, 1, 2, 3, 4])
+        xp_assert_close(fft.fftshift(x), y)
+        xp_assert_close(fft.ifftshift(y), x)
+
+    def test_inverse(self, xp):
+        for n in [1, 4, 9, 100, 211]:
+            x = xp.asarray(np.random.random((n,)))
+            xp_assert_close(fft.ifftshift(fft.fftshift(x)), x)
+
+    def test_axes_keyword(self, xp):
+        freqs = xp.asarray([[0., 1, 2], [3, 4, -4], [-3, -2, -1]])
+        shifted = xp.asarray([[-1., -3, -2], [2, 0, 1], [-4, 3, 4]])
+        xp_assert_close(fft.fftshift(freqs, axes=(0, 1)), shifted)
+        xp_assert_close(fft.fftshift(freqs, axes=0), fft.fftshift(freqs, axes=(0,)))
+        xp_assert_close(fft.ifftshift(shifted, axes=(0, 1)), freqs)
+        xp_assert_close(fft.ifftshift(shifted, axes=0),
+                        fft.ifftshift(shifted, axes=(0,)))
+        xp_assert_close(fft.fftshift(freqs), shifted)
+        xp_assert_close(fft.ifftshift(shifted), freqs)
+    
+    def test_uneven_dims(self, xp):
+        """ Test 2D input, which has uneven dimension sizes """
+        freqs = xp.asarray([
+            [0, 1],
+            [2, 3],
+            [4, 5]
+        ], dtype=xp.float64)
+
+        # shift in dimension 0
+        shift_dim0 = xp.asarray([
+            [4, 5],
+            [0, 1],
+            [2, 3]
+        ], dtype=xp.float64)
+        xp_assert_close(fft.fftshift(freqs, axes=0), shift_dim0)
+        xp_assert_close(fft.ifftshift(shift_dim0, axes=0), freqs)
+        xp_assert_close(fft.fftshift(freqs, axes=(0,)), shift_dim0)
+        xp_assert_close(fft.ifftshift(shift_dim0, axes=[0]), freqs)
+
+        # shift in dimension 1
+        shift_dim1 = xp.asarray([
+            [1, 0],
+            [3, 2],
+            [5, 4]
+        ], dtype=xp.float64)
+        xp_assert_close(fft.fftshift(freqs, axes=1), shift_dim1)
+        xp_assert_close(fft.ifftshift(shift_dim1, axes=1), freqs)
+
+        # shift in both dimensions
+        shift_dim_both = xp.asarray([
+            [5, 4],
+            [1, 0],
+            [3, 2]
+        ], dtype=xp.float64)
+        xp_assert_close(fft.fftshift(freqs, axes=(0, 1)), shift_dim_both)
+        xp_assert_close(fft.ifftshift(shift_dim_both, axes=(0, 1)), freqs)
+        xp_assert_close(fft.fftshift(freqs, axes=[0, 1]), shift_dim_both)
+        xp_assert_close(fft.ifftshift(shift_dim_both, axes=[0, 1]), freqs)
+
+        # axes=None (default) shift in all dimensions
+        xp_assert_close(fft.fftshift(freqs, axes=None), shift_dim_both)
+        xp_assert_close(fft.ifftshift(shift_dim_both, axes=None), freqs)
+        xp_assert_close(fft.fftshift(freqs), shift_dim_both)
+        xp_assert_close(fft.ifftshift(shift_dim_both), freqs)
+
+
+@skip_if_array_api('array_api_strict', 'cupy',
+                   reasons=['fft not yet implemented by array-api-strict',
+                            'cupy.fft not yet implemented by array-api-compat'])
+class TestFFTFreq:
+
+    def test_definition(self, xp):
+        device = SCIPY_DEVICE
+        try:
+            x = xp.asarray([0, 1, 2, 3, 4, -4, -3, -2, -1],
+                           dtype=xp.float64, device=device)
+            x2 = xp.asarray([0, 1, 2, 3, 4, -5, -4, -3, -2, -1],
+                            dtype=xp.float64, device=device)
+        except TypeError:
+            x = xp.asarray([0, 1, 2, 3, 4, -4, -3, -2, -1], dtype=xp.float64)
+            x2 = xp.asarray([0, 1, 2, 3, 4, -5, -4, -3, -2, -1],
+                            dtype=xp.float64)
+
+        y = xp.asarray(9 * fft.fftfreq(9, xp=xp), dtype=xp.float64)
+        xp_assert_close(y, x)
+        y = xp.asarray(9 * xp.pi * fft.fftfreq(9, xp.pi, xp=xp), dtype=xp.float64)
+        xp_assert_close(y, x)
+
+        y = xp.asarray(10 * fft.fftfreq(10, xp=xp), dtype=xp.float64)
+        xp_assert_close(y, x2)
+        y = xp.asarray(10 * xp.pi * fft.fftfreq(10, xp.pi, xp=xp), dtype=xp.float64)
+        xp_assert_close(y, x2)
+
+
+@skip_if_array_api('array_api_strict', 'cupy',
+                   reasons=['fft not yet implemented by array-api-strict',
+                            'cupy.fft not yet implemented by array-api-compat'])
+class TestRFFTFreq:
+
+    def test_definition(self, xp):
+        device = SCIPY_DEVICE
+        try:
+            x = xp.asarray([0, 1, 2, 3, 4], dtype=xp.float64, device=device)
+            x2 = xp.asarray([0, 1, 2, 3, 4, 5], dtype=xp.float64, device=device)
+        except TypeError:
+            # work around the `device` keyword not being implemented in numpy yet
+            x = xp.asarray([0, 1, 2, 3, 4], dtype=xp.float64)
+            x2 = xp.asarray([0, 1, 2, 3, 4, 5], dtype=xp.float64)
+
+        y = xp.asarray(9 * fft.rfftfreq(9, xp=xp), dtype=xp.float64)
+        xp_assert_close(y, x)
+        y = xp.asarray(9 * xp.pi * fft.rfftfreq(9, xp.pi, xp=xp), dtype=xp.float64)
+        xp_assert_close(y, x)
+
+        y = xp.asarray(10 * fft.rfftfreq(10, xp=xp), dtype=xp.float64)
+        xp_assert_close(y, x2)
+        y = xp.asarray(10 * xp.pi * fft.rfftfreq(10, xp.pi, xp=xp), dtype=xp.float64)
+        xp_assert_close(y, x2)

env-llmeval/lib/python3.10/site-packages/scipy/fft/tests/test_multithreading.py

@@ -0,0 +1,83 @@
+from scipy import fft
+import numpy as np
+import pytest
+from numpy.testing import assert_allclose
+import multiprocessing
+import os
+
+
+@pytest.fixture(scope='module')
+def x():
+    return np.random.randn(512, 128)  # Must be large enough to qualify for mt
+
+
+@pytest.mark.parametrize("func", [
+    fft.fft, fft.ifft, fft.fft2, fft.ifft2, fft.fftn, fft.ifftn,
+    fft.rfft, fft.irfft, fft.rfft2, fft.irfft2, fft.rfftn, fft.irfftn,
+    fft.hfft, fft.ihfft, fft.hfft2, fft.ihfft2, fft.hfftn, fft.ihfftn,
+    fft.dct, fft.idct, fft.dctn, fft.idctn,
+    fft.dst, fft.idst, fft.dstn, fft.idstn,
+])
+@pytest.mark.parametrize("workers", [2, -1])
+def test_threaded_same(x, func, workers):
+    expected = func(x, workers=1)
+    actual = func(x, workers=workers)
+    assert_allclose(actual, expected)
+
+
+def _mt_fft(x):
+    return fft.fft(x, workers=2)
+
+
+def test_mixed_threads_processes(x):
+    # Test that the fft threadpool is safe to use before & after fork
+
+    expect = fft.fft(x, workers=2)
+
+    with multiprocessing.Pool(2) as p:
+        res = p.map(_mt_fft, [x for _ in range(4)])
+
+    for r in res:
+        assert_allclose(r, expect)
+
+    fft.fft(x, workers=2)
+
+
+def test_invalid_workers(x):
+    cpus = os.cpu_count()
+
+    fft.ifft([1], workers=-cpus)
+
+    with pytest.raises(ValueError, match='workers must not be zero'):
+        fft.fft(x, workers=0)
+
+    with pytest.raises(ValueError, match='workers value out of range'):
+        fft.ifft(x, workers=-cpus-1)
+
+
+def test_set_get_workers():
+    cpus = os.cpu_count()
+    assert fft.get_workers() == 1
+    with fft.set_workers(4):
+        assert fft.get_workers() == 4
+
+        with fft.set_workers(-1):
+            assert fft.get_workers() == cpus
+
+        assert fft.get_workers() == 4
+
+    assert fft.get_workers() == 1
+
+    with fft.set_workers(-cpus):
+        assert fft.get_workers() == 1
+
+
+def test_set_workers_invalid():
+
+    with pytest.raises(ValueError, match='workers must not be zero'):
+        with fft.set_workers(0):
+            pass
+
+    with pytest.raises(ValueError, match='workers value out of range'):
+        with fft.set_workers(-os.cpu_count()-1):
+            pass

env-llmeval/lib/python3.10/site-packages/scipy/optimize/_basinhopping.py

@@ -0,0 +1,753 @@
+"""
+basinhopping: The basinhopping global optimization algorithm
+"""
+import numpy as np
+import math
+import inspect
+import scipy.optimize
+from scipy._lib._util import check_random_state
+
+__all__ = ['basinhopping']
+
+
+_params = (inspect.Parameter('res_new', kind=inspect.Parameter.KEYWORD_ONLY),
+           inspect.Parameter('res_old', kind=inspect.Parameter.KEYWORD_ONLY))
+_new_accept_test_signature = inspect.Signature(parameters=_params)
+
+
+class Storage:
+    """
+    Class used to store the lowest energy structure
+    """
+    def __init__(self, minres):
+        self._add(minres)
+
+    def _add(self, minres):
+        self.minres = minres
+        self.minres.x = np.copy(minres.x)
+
+    def update(self, minres):
+        if minres.success and (minres.fun < self.minres.fun
+                               or not self.minres.success):
+            self._add(minres)
+            return True
+        else:
+            return False
+
+    def get_lowest(self):
+        return self.minres
+
+
+class BasinHoppingRunner:
+    """This class implements the core of the basinhopping algorithm.
+
+    x0 : ndarray
+        The starting coordinates.
+    minimizer : callable
+        The local minimizer, with signature ``result = minimizer(x)``.
+        The return value is an `optimize.OptimizeResult` object.
+    step_taking : callable
+        This function displaces the coordinates randomly. Signature should
+        be ``x_new = step_taking(x)``. Note that `x` may be modified in-place.
+    accept_tests : list of callables
+        Each test is passed the kwargs `f_new`, `x_new`, `f_old` and
+        `x_old`. These tests will be used to judge whether or not to accept
+        the step. The acceptable return values are True, False, or ``"force
+        accept"``. If any of the tests return False then the step is rejected.
+        If ``"force accept"``, then this will override any other tests in
+        order to accept the step. This can be used, for example, to forcefully
+        escape from a local minimum that ``basinhopping`` is trapped in.
+    disp : bool, optional
+        Display status messages.
+
+    """
+    def __init__(self, x0, minimizer, step_taking, accept_tests, disp=False):
+        self.x = np.copy(x0)
+        self.minimizer = minimizer
+        self.step_taking = step_taking
+        self.accept_tests = accept_tests
+        self.disp = disp
+
+        self.nstep = 0
+
+        # initialize return object
+        self.res = scipy.optimize.OptimizeResult()
+        self.res.minimization_failures = 0
+
+        # do initial minimization
+        minres = minimizer(self.x)
+        if not minres.success:
+            self.res.minimization_failures += 1
+            if self.disp:
+                print("warning: basinhopping: local minimization failure")
+        self.x = np.copy(minres.x)
+        self.energy = minres.fun
+        self.incumbent_minres = minres  # best minimize result found so far
+        if self.disp:
+            print("basinhopping step %d: f %g" % (self.nstep, self.energy))
+
+        # initialize storage class
+        self.storage = Storage(minres)
+
+        if hasattr(minres, "nfev"):
+            self.res.nfev = minres.nfev
+        if hasattr(minres, "njev"):
+            self.res.njev = minres.njev
+        if hasattr(minres, "nhev"):
+            self.res.nhev = minres.nhev
+
+    def _monte_carlo_step(self):
+        """Do one Monte Carlo iteration
+
+        Randomly displace the coordinates, minimize, and decide whether
+        or not to accept the new coordinates.
+        """
+        # Take a random step.  Make a copy of x because the step_taking
+        # algorithm might change x in place
+        x_after_step = np.copy(self.x)
+        x_after_step = self.step_taking(x_after_step)
+
+        # do a local minimization
+        minres = self.minimizer(x_after_step)
+        x_after_quench = minres.x
+        energy_after_quench = minres.fun
+        if not minres.success:
+            self.res.minimization_failures += 1
+            if self.disp:
+                print("warning: basinhopping: local minimization failure")
+        if hasattr(minres, "nfev"):
+            self.res.nfev += minres.nfev
+        if hasattr(minres, "njev"):
+            self.res.njev += minres.njev
+        if hasattr(minres, "nhev"):
+            self.res.nhev += minres.nhev
+
+        # accept the move based on self.accept_tests. If any test is False,
+        # then reject the step.  If any test returns the special string
+        # 'force accept', then accept the step regardless. This can be used
+        # to forcefully escape from a local minimum if normal basin hopping
+        # steps are not sufficient.
+        accept = True
+        for test in self.accept_tests:
+            if inspect.signature(test) == _new_accept_test_signature:
+                testres = test(res_new=minres, res_old=self.incumbent_minres)
+            else:
+                testres = test(f_new=energy_after_quench, x_new=x_after_quench,
+                               f_old=self.energy, x_old=self.x)
+
+            if testres == 'force accept':
+                accept = True
+                break
+            elif testres is None:
+                raise ValueError("accept_tests must return True, False, or "
+                                 "'force accept'")
+            elif not testres:
+                accept = False
+
+        # Report the result of the acceptance test to the take step class.
+        # This is for adaptive step taking
+        if hasattr(self.step_taking, "report"):
+            self.step_taking.report(accept, f_new=energy_after_quench,
+                                    x_new=x_after_quench, f_old=self.energy,
+                                    x_old=self.x)
+
+        return accept, minres
+
+    def one_cycle(self):
+        """Do one cycle of the basinhopping algorithm
+        """
+        self.nstep += 1
+        new_global_min = False
+
+        accept, minres = self._monte_carlo_step()
+
+        if accept:
+            self.energy = minres.fun
+            self.x = np.copy(minres.x)
+            self.incumbent_minres = minres  # best minimize result found so far
+            new_global_min = self.storage.update(minres)
+
+        # print some information
+        if self.disp:
+            self.print_report(minres.fun, accept)
+            if new_global_min:
+                print("found new global minimum on step %d with function"
+                      " value %g" % (self.nstep, self.energy))
+
+        # save some variables as BasinHoppingRunner attributes
+        self.xtrial = minres.x
+        self.energy_trial = minres.fun
+        self.accept = accept
+
+        return new_global_min
+
+    def print_report(self, energy_trial, accept):
+        """print a status update"""
+        minres = self.storage.get_lowest()
+        print("basinhopping step %d: f %g trial_f %g accepted %d "
+              " lowest_f %g" % (self.nstep, self.energy, energy_trial,
+                                accept, minres.fun))
+
+
+class AdaptiveStepsize:
+    """
+    Class to implement adaptive stepsize.
+
+    This class wraps the step taking class and modifies the stepsize to
+    ensure the true acceptance rate is as close as possible to the target.
+
+    Parameters
+    ----------
+    takestep : callable
+        The step taking routine.  Must contain modifiable attribute
+        takestep.stepsize
+    accept_rate : float, optional
+        The target step acceptance rate
+    interval : int, optional
+        Interval for how often to update the stepsize
+    factor : float, optional
+        The step size is multiplied or divided by this factor upon each
+        update.
+    verbose : bool, optional
+        Print information about each update
+
+    """
+    def __init__(self, takestep, accept_rate=0.5, interval=50, factor=0.9,
+                 verbose=True):
+        self.takestep = takestep
+        self.target_accept_rate = accept_rate
+        self.interval = interval
+        self.factor = factor
+        self.verbose = verbose
+
+        self.nstep = 0
+        self.nstep_tot = 0
+        self.naccept = 0
+
+    def __call__(self, x):
+        return self.take_step(x)
+
+    def _adjust_step_size(self):
+        old_stepsize = self.takestep.stepsize
+        accept_rate = float(self.naccept) / self.nstep
+        if accept_rate > self.target_accept_rate:
+            # We're accepting too many steps. This generally means we're
+            # trapped in a basin. Take bigger steps.
+            self.takestep.stepsize /= self.factor
+        else:
+            # We're not accepting enough steps. Take smaller steps.
+            self.takestep.stepsize *= self.factor
+        if self.verbose:
+            print("adaptive stepsize: acceptance rate {:f} target {:f} new "
+                  "stepsize {:g} old stepsize {:g}".format(accept_rate,
+                  self.target_accept_rate, self.takestep.stepsize,
+                  old_stepsize))
+
+    def take_step(self, x):
+        self.nstep += 1
+        self.nstep_tot += 1
+        if self.nstep % self.interval == 0:
+            self._adjust_step_size()
+        return self.takestep(x)
+
+    def report(self, accept, **kwargs):
+        "called by basinhopping to report the result of the step"
+        if accept:
+            self.naccept += 1
+
+
+class RandomDisplacement:
+    """Add a random displacement of maximum size `stepsize` to each coordinate.
+
+    Calling this updates `x` in-place.
+
+    Parameters
+    ----------
+    stepsize : float, optional
+        Maximum stepsize in any dimension
+    random_gen : {None, int, `numpy.random.Generator`,
+                  `numpy.random.RandomState`}, optional
+
+        If `seed` is None (or `np.random`), the `numpy.random.RandomState`
+        singleton is used.
+        If `seed` is an int, a new ``RandomState`` instance is used,
+        seeded with `seed`.
+        If `seed` is already a ``Generator`` or ``RandomState`` instance then
+        that instance is used.
+
+    """
+
+    def __init__(self, stepsize=0.5, random_gen=None):
+        self.stepsize = stepsize
+        self.random_gen = check_random_state(random_gen)
+
+    def __call__(self, x):
+        x += self.random_gen.uniform(-self.stepsize, self.stepsize,
+                                     np.shape(x))
+        return x
+
+
+class MinimizerWrapper:
+    """
+    wrap a minimizer function as a minimizer class
+    """
+    def __init__(self, minimizer, func=None, **kwargs):
+        self.minimizer = minimizer
+        self.func = func
+        self.kwargs = kwargs
+
+    def __call__(self, x0):
+        if self.func is None:
+            return self.minimizer(x0, **self.kwargs)
+        else:
+            return self.minimizer(self.func, x0, **self.kwargs)
+
+
+class Metropolis:
+    """Metropolis acceptance criterion.
+
+    Parameters
+    ----------
+    T : float
+        The "temperature" parameter for the accept or reject criterion.
+    random_gen : {None, int, `numpy.random.Generator`,
+                  `numpy.random.RandomState`}, optional
+
+        If `seed` is None (or `np.random`), the `numpy.random.RandomState`
+        singleton is used.
+        If `seed` is an int, a new ``RandomState`` instance is used,
+        seeded with `seed`.
+        If `seed` is already a ``Generator`` or ``RandomState`` instance then
+        that instance is used.
+        Random number generator used for acceptance test.
+
+    """
+
+    def __init__(self, T, random_gen=None):
+        # Avoid ZeroDivisionError since "MBH can be regarded as a special case
+        # of the BH framework with the Metropolis criterion, where temperature
+        # T = 0." (Reject all steps that increase energy.)
+        self.beta = 1.0 / T if T != 0 else float('inf')
+        self.random_gen = check_random_state(random_gen)
+
+    def accept_reject(self, res_new, res_old):
+        """
+        Assuming the local search underlying res_new was successful:
+        If new energy is lower than old, it will always be accepted.
+        If new is higher than old, there is a chance it will be accepted,
+        less likely for larger differences.
+        """
+        with np.errstate(invalid='ignore'):
+            # The energy values being fed to Metropolis are 1-length arrays, and if
+            # they are equal, their difference is 0, which gets multiplied by beta,
+            # which is inf, and array([0]) * float('inf') causes
+            #
+            # RuntimeWarning: invalid value encountered in multiply
+            #
+            # Ignore this warning so when the algorithm is on a flat plane, it always
+            # accepts the step, to try to move off the plane.
+            prod = -(res_new.fun - res_old.fun) * self.beta
+            w = math.exp(min(0, prod))
+
+        rand = self.random_gen.uniform()
+        return w >= rand and (res_new.success or not res_old.success)
+
+    def __call__(self, *, res_new, res_old):
+        """
+        f_new and f_old are mandatory in kwargs
+        """
+        return bool(self.accept_reject(res_new, res_old))
+
+
+def basinhopping(func, x0, niter=100, T=1.0, stepsize=0.5,
+                 minimizer_kwargs=None, take_step=None, accept_test=None,
+                 callback=None, interval=50, disp=False, niter_success=None,
+                 seed=None, *, target_accept_rate=0.5, stepwise_factor=0.9):
+    """Find the global minimum of a function using the basin-hopping algorithm.
+
+    Basin-hopping is a two-phase method that combines a global stepping
+    algorithm with local minimization at each step. Designed to mimic
+    the natural process of energy minimization of clusters of atoms, it works
+    well for similar problems with "funnel-like, but rugged" energy landscapes
+    [5]_.
+
+    As the step-taking, step acceptance, and minimization methods are all
+    customizable, this function can also be used to implement other two-phase
+    methods.
+
+    Parameters
+    ----------
+    func : callable ``f(x, *args)``
+        Function to be optimized.  ``args`` can be passed as an optional item
+        in the dict `minimizer_kwargs`
+    x0 : array_like
+        Initial guess.
+    niter : integer, optional
+        The number of basin-hopping iterations. There will be a total of
+        ``niter + 1`` runs of the local minimizer.
+    T : float, optional
+        The "temperature" parameter for the acceptance or rejection criterion.
+        Higher "temperatures" mean that larger jumps in function value will be
+        accepted.  For best results `T` should be comparable to the
+        separation (in function value) between local minima.
+    stepsize : float, optional
+        Maximum step size for use in the random displacement.
+    minimizer_kwargs : dict, optional
+        Extra keyword arguments to be passed to the local minimizer
+        `scipy.optimize.minimize` Some important options could be:
+
+            method : str
+                The minimization method (e.g. ``"L-BFGS-B"``)
+            args : tuple
+                Extra arguments passed to the objective function (`func`) and
+                its derivatives (Jacobian, Hessian).
+
+    take_step : callable ``take_step(x)``, optional
+        Replace the default step-taking routine with this routine. The default
+        step-taking routine is a random displacement of the coordinates, but
+        other step-taking algorithms may be better for some systems.
+        `take_step` can optionally have the attribute ``take_step.stepsize``.
+        If this attribute exists, then `basinhopping` will adjust
+        ``take_step.stepsize`` in order to try to optimize the global minimum
+        search.
+    accept_test : callable, ``accept_test(f_new=f_new, x_new=x_new, f_old=fold, x_old=x_old)``, optional
+        Define a test which will be used to judge whether to accept the
+        step. This will be used in addition to the Metropolis test based on
+        "temperature" `T`. The acceptable return values are True,
+        False, or ``"force accept"``. If any of the tests return False
+        then the step is rejected. If the latter, then this will override any
+        other tests in order to accept the step. This can be used, for example,
+        to forcefully escape from a local minimum that `basinhopping` is
+        trapped in.
+    callback : callable, ``callback(x, f, accept)``, optional
+        A callback function which will be called for all minima found. ``x``
+        and ``f`` are the coordinates and function value of the trial minimum,
+        and ``accept`` is whether that minimum was accepted. This can
+        be used, for example, to save the lowest N minima found. Also,
+        `callback` can be used to specify a user defined stop criterion by
+        optionally returning True to stop the `basinhopping` routine.
+    interval : integer, optional
+        interval for how often to update the `stepsize`
+    disp : bool, optional
+        Set to True to print status messages
+    niter_success : integer, optional
+        Stop the run if the global minimum candidate remains the same for this
+        number of iterations.
+    seed : {None, int, `numpy.random.Generator`, `numpy.random.RandomState`}, optional
+
+        If `seed` is None (or `np.random`), the `numpy.random.RandomState`
+        singleton is used.
+        If `seed` is an int, a new ``RandomState`` instance is used,
+        seeded with `seed`.
+        If `seed` is already a ``Generator`` or ``RandomState`` instance then
+        that instance is used.
+        Specify `seed` for repeatable minimizations. The random numbers
+        generated with this seed only affect the default Metropolis
+        `accept_test` and the default `take_step`. If you supply your own
+        `take_step` and `accept_test`, and these functions use random
+        number generation, then those functions are responsible for the state
+        of their random number generator.
+    target_accept_rate : float, optional
+        The target acceptance rate that is used to adjust the `stepsize`.
+        If the current acceptance rate is greater than the target,
+        then the `stepsize` is increased. Otherwise, it is decreased.
+        Range is (0, 1). Default is 0.5.
+
+        .. versionadded:: 1.8.0
+
+    stepwise_factor : float, optional
+        The `stepsize` is multiplied or divided by this stepwise factor upon
+        each update. Range is (0, 1). Default is 0.9.
+
+        .. versionadded:: 1.8.0
+
+    Returns
+    -------
+    res : OptimizeResult
+        The optimization result represented as a `OptimizeResult` object.
+        Important attributes are: ``x`` the solution array, ``fun`` the value
+        of the function at the solution, and ``message`` which describes the
+        cause of the termination. The ``OptimizeResult`` object returned by the
+        selected minimizer at the lowest minimum is also contained within this
+        object and can be accessed through the ``lowest_optimization_result``
+        attribute.  See `OptimizeResult` for a description of other attributes.
+
+    See Also
+    --------
+    minimize :
+        The local minimization function called once for each basinhopping step.
+        `minimizer_kwargs` is passed to this routine.
+
+    Notes
+    -----
+    Basin-hopping is a stochastic algorithm which attempts to find the global
+    minimum of a smooth scalar function of one or more variables [1]_ [2]_ [3]_
+    [4]_. The algorithm in its current form was described by David Wales and
+    Jonathan Doye [2]_ http://www-wales.ch.cam.ac.uk/.
+
+    The algorithm is iterative with each cycle composed of the following
+    features
+
+    1) random perturbation of the coordinates
+
+    2) local minimization
+
+    3) accept or reject the new coordinates based on the minimized function
+       value
+
+    The acceptance test used here is the Metropolis criterion of standard Monte
+    Carlo algorithms, although there are many other possibilities [3]_.
+
+    This global minimization method has been shown to be extremely efficient
+    for a wide variety of problems in physics and chemistry. It is
+    particularly useful when the function has many minima separated by large
+    barriers. See the `Cambridge Cluster Database
+    <https://www-wales.ch.cam.ac.uk/CCD.html>`_ for databases of molecular
+    systems that have been optimized primarily using basin-hopping. This
+    database includes minimization problems exceeding 300 degrees of freedom.
+
+    See the free software program `GMIN <https://www-wales.ch.cam.ac.uk/GMIN>`_
+    for a Fortran implementation of basin-hopping. This implementation has many
+    variations of the procedure described above, including more
+    advanced step taking algorithms and alternate acceptance criterion.
+
+    For stochastic global optimization there is no way to determine if the true
+    global minimum has actually been found. Instead, as a consistency check,
+    the algorithm can be run from a number of different random starting points
+    to ensure the lowest minimum found in each example has converged to the
+    global minimum. For this reason, `basinhopping` will by default simply
+    run for the number of iterations `niter` and return the lowest minimum
+    found. It is left to the user to ensure that this is in fact the global
+    minimum.
+
+    Choosing `stepsize`:  This is a crucial parameter in `basinhopping` and
+    depends on the problem being solved. The step is chosen uniformly in the
+    region from x0-stepsize to x0+stepsize, in each dimension. Ideally, it
+    should be comparable to the typical separation (in argument values) between
+    local minima of the function being optimized. `basinhopping` will, by
+    default, adjust `stepsize` to find an optimal value, but this may take
+    many iterations. You will get quicker results if you set a sensible
+    initial value for ``stepsize``.
+
+    Choosing `T`: The parameter `T` is the "temperature" used in the
+    Metropolis criterion. Basinhopping steps are always accepted if
+    ``func(xnew) < func(xold)``. Otherwise, they are accepted with
+    probability::
+
+        exp( -(func(xnew) - func(xold)) / T )
+
+    So, for best results, `T` should to be comparable to the typical
+    difference (in function values) between local minima. (The height of
+    "walls" between local minima is irrelevant.)
+
+    If `T` is 0, the algorithm becomes Monotonic Basin-Hopping, in which all
+    steps that increase energy are rejected.
+
+    .. versionadded:: 0.12.0
+
+    References
+    ----------
+    .. [1] Wales, David J. 2003, Energy Landscapes, Cambridge University Press,
+        Cambridge, UK.
+    .. [2] Wales, D J, and Doye J P K, Global Optimization by Basin-Hopping and
+        the Lowest Energy Structures of Lennard-Jones Clusters Containing up to
+        110 Atoms.  Journal of Physical Chemistry A, 1997, 101, 5111.
+    .. [3] Li, Z. and Scheraga, H. A., Monte Carlo-minimization approach to the
+        multiple-minima problem in protein folding, Proc. Natl. Acad. Sci. USA,
+        1987, 84, 6611.
+    .. [4] Wales, D. J. and Scheraga, H. A., Global optimization of clusters,
+        crystals, and biomolecules, Science, 1999, 285, 1368.
+    .. [5] Olson, B., Hashmi, I., Molloy, K., and Shehu1, A., Basin Hopping as
+        a General and Versatile Optimization Framework for the Characterization
+        of Biological Macromolecules, Advances in Artificial Intelligence,
+        Volume 2012 (2012), Article ID 674832, :doi:`10.1155/2012/674832`
+
+    Examples
+    --------
+    The following example is a 1-D minimization problem, with many
+    local minima superimposed on a parabola.
+
+    >>> import numpy as np
+    >>> from scipy.optimize import basinhopping
+    >>> func = lambda x: np.cos(14.5 * x - 0.3) + (x + 0.2) * x
+    >>> x0 = [1.]
+
+    Basinhopping, internally, uses a local minimization algorithm. We will use
+    the parameter `minimizer_kwargs` to tell basinhopping which algorithm to
+    use and how to set up that minimizer. This parameter will be passed to
+    `scipy.optimize.minimize`.
+
+    >>> minimizer_kwargs = {"method": "BFGS"}
+    >>> ret = basinhopping(func, x0, minimizer_kwargs=minimizer_kwargs,
+    ...                    niter=200)
+    >>> print("global minimum: x = %.4f, f(x) = %.4f" % (ret.x, ret.fun))
+    global minimum: x = -0.1951, f(x) = -1.0009
+
+    Next consider a 2-D minimization problem. Also, this time, we
+    will use gradient information to significantly speed up the search.
+
+    >>> def func2d(x):
+    ...     f = np.cos(14.5 * x[0] - 0.3) + (x[1] + 0.2) * x[1] + (x[0] +
+    ...                                                            0.2) * x[0]
+    ...     df = np.zeros(2)
+    ...     df[0] = -14.5 * np.sin(14.5 * x[0] - 0.3) + 2. * x[0] + 0.2
+    ...     df[1] = 2. * x[1] + 0.2
+    ...     return f, df
+
+    We'll also use a different local minimization algorithm. Also, we must tell
+    the minimizer that our function returns both energy and gradient (Jacobian).
+
+    >>> minimizer_kwargs = {"method":"L-BFGS-B", "jac":True}
+    >>> x0 = [1.0, 1.0]
+    >>> ret = basinhopping(func2d, x0, minimizer_kwargs=minimizer_kwargs,
+    ...                    niter=200)
+    >>> print("global minimum: x = [%.4f, %.4f], f(x) = %.4f" % (ret.x[0],
+    ...                                                           ret.x[1],
+    ...                                                           ret.fun))
+    global minimum: x = [-0.1951, -0.1000], f(x) = -1.0109
+
+    Here is an example using a custom step-taking routine. Imagine you want
+    the first coordinate to take larger steps than the rest of the coordinates.
+    This can be implemented like so:
+
+    >>> class MyTakeStep:
+    ...    def __init__(self, stepsize=0.5):
+    ...        self.stepsize = stepsize
+    ...        self.rng = np.random.default_rng()
+    ...    def __call__(self, x):
+    ...        s = self.stepsize
+    ...        x[0] += self.rng.uniform(-2.*s, 2.*s)
+    ...        x[1:] += self.rng.uniform(-s, s, x[1:].shape)
+    ...        return x
+
+    Since ``MyTakeStep.stepsize`` exists basinhopping will adjust the magnitude
+    of `stepsize` to optimize the search. We'll use the same 2-D function as
+    before
+
+    >>> mytakestep = MyTakeStep()
+    >>> ret = basinhopping(func2d, x0, minimizer_kwargs=minimizer_kwargs,
+    ...                    niter=200, take_step=mytakestep)
+    >>> print("global minimum: x = [%.4f, %.4f], f(x) = %.4f" % (ret.x[0],
+    ...                                                           ret.x[1],
+    ...                                                           ret.fun))
+    global minimum: x = [-0.1951, -0.1000], f(x) = -1.0109
+
+    Now, let's do an example using a custom callback function which prints the
+    value of every minimum found
+
+    >>> def print_fun(x, f, accepted):
+    ...         print("at minimum %.4f accepted %d" % (f, int(accepted)))
+
+    We'll run it for only 10 basinhopping steps this time.
+
+    >>> rng = np.random.default_rng()
+    >>> ret = basinhopping(func2d, x0, minimizer_kwargs=minimizer_kwargs,
+    ...                    niter=10, callback=print_fun, seed=rng)
+    at minimum 0.4159 accepted 1
+    at minimum -0.4317 accepted 1
+    at minimum -1.0109 accepted 1
+    at minimum -0.9073 accepted 1
+    at minimum -0.4317 accepted 0
+    at minimum -0.1021 accepted 1
+    at minimum -0.7425 accepted 1
+    at minimum -0.9073 accepted 1
+    at minimum -0.4317 accepted 0
+    at minimum -0.7425 accepted 1
+    at minimum -0.9073 accepted 1
+
+    The minimum at -1.0109 is actually the global minimum, found already on the
+    8th iteration.
+
+    """ # numpy/numpydoc#87  # noqa: E501
+    if target_accept_rate <= 0. or target_accept_rate >= 1.:
+        raise ValueError('target_accept_rate has to be in range (0, 1)')
+    if stepwise_factor <= 0. or stepwise_factor >= 1.:
+        raise ValueError('stepwise_factor has to be in range (0, 1)')
+
+    x0 = np.array(x0)
+
+    # set up the np.random generator
+    rng = check_random_state(seed)
+
+    # set up minimizer
+    if minimizer_kwargs is None:
+        minimizer_kwargs = dict()
+    wrapped_minimizer = MinimizerWrapper(scipy.optimize.minimize, func,
+                                         **minimizer_kwargs)
+
+    # set up step-taking algorithm
+    if take_step is not None:
+        if not callable(take_step):
+            raise TypeError("take_step must be callable")
+        # if take_step.stepsize exists then use AdaptiveStepsize to control
+        # take_step.stepsize
+        if hasattr(take_step, "stepsize"):
+            take_step_wrapped = AdaptiveStepsize(
+                take_step, interval=interval,
+                accept_rate=target_accept_rate,
+                factor=stepwise_factor,
+                verbose=disp)
+        else:
+            take_step_wrapped = take_step
+    else:
+        # use default
+        displace = RandomDisplacement(stepsize=stepsize, random_gen=rng)
+        take_step_wrapped = AdaptiveStepsize(displace, interval=interval,
+                                             accept_rate=target_accept_rate,
+                                             factor=stepwise_factor,
+                                             verbose=disp)
+
+    # set up accept tests
+    accept_tests = []
+    if accept_test is not None:
+        if not callable(accept_test):
+            raise TypeError("accept_test must be callable")
+        accept_tests = [accept_test]
+
+    # use default
+    metropolis = Metropolis(T, random_gen=rng)
+    accept_tests.append(metropolis)
+
+    if niter_success is None:
+        niter_success = niter + 2
+
+    bh = BasinHoppingRunner(x0, wrapped_minimizer, take_step_wrapped,
+                            accept_tests, disp=disp)
+
+    # The wrapped minimizer is called once during construction of
+    # BasinHoppingRunner, so run the callback
+    if callable(callback):
+        callback(bh.storage.minres.x, bh.storage.minres.fun, True)
+
+    # start main iteration loop
+    count, i = 0, 0
+    message = ["requested number of basinhopping iterations completed"
+               " successfully"]
+    for i in range(niter):
+        new_global_min = bh.one_cycle()
+
+        if callable(callback):
+            # should we pass a copy of x?
+            val = callback(bh.xtrial, bh.energy_trial, bh.accept)
+            if val is not None:
+                if val:
+                    message = ["callback function requested stop early by"
+                               "returning True"]
+                    break
+
+        count += 1
+        if new_global_min:
+            count = 0
+        elif count > niter_success:
+            message = ["success condition satisfied"]
+            break
+
+    # prepare return object
+    res = bh.res
+    res.lowest_optimization_result = bh.storage.get_lowest()
+    res.x = np.copy(res.lowest_optimization_result.x)
+    res.fun = res.lowest_optimization_result.fun
+    res.message = message
+    res.nit = i + 1
+    res.success = res.lowest_optimization_result.success
+    return res

env-llmeval/lib/python3.10/site-packages/scipy/optimize/_bracket.py

@@ -0,0 +1,663 @@
+import numpy as np
+import scipy._lib._elementwise_iterative_method as eim
+from scipy._lib._util import _RichResult
+
+_ELIMITS = -1  # used in _bracket_root
+_ESTOPONESIDE = 2  # used in _bracket_root
+
+def _bracket_root_iv(func, xl0, xr0, xmin, xmax, factor, args, maxiter):
+
+    if not callable(func):
+        raise ValueError('`func` must be callable.')
+
+    if not np.iterable(args):
+        args = (args,)
+
+    xl0 = np.asarray(xl0)[()]
+    if not np.issubdtype(xl0.dtype, np.number) or np.iscomplex(xl0).any():
+        raise ValueError('`xl0` must be numeric and real.')
+
+    xr0 = xl0 + 1 if xr0 is None else xr0
+    xmin = -np.inf if xmin is None else xmin
+    xmax = np.inf if xmax is None else xmax
+    factor = 2. if factor is None else factor
+    xl0, xr0, xmin, xmax, factor = np.broadcast_arrays(xl0, xr0, xmin, xmax, factor)
+
+    if not np.issubdtype(xr0.dtype, np.number) or np.iscomplex(xr0).any():
+        raise ValueError('`xr0` must be numeric and real.')
+
+    if not np.issubdtype(xmin.dtype, np.number) or np.iscomplex(xmin).any():
+        raise ValueError('`xmin` must be numeric and real.')
+
+    if not np.issubdtype(xmax.dtype, np.number) or np.iscomplex(xmax).any():
+        raise ValueError('`xmax` must be numeric and real.')
+
+    if not np.issubdtype(factor.dtype, np.number) or np.iscomplex(factor).any():
+        raise ValueError('`factor` must be numeric and real.')
+    if not np.all(factor > 1):
+        raise ValueError('All elements of `factor` must be greater than 1.')
+
+    maxiter = np.asarray(maxiter)
+    message = '`maxiter` must be a non-negative integer.'
+    if (not np.issubdtype(maxiter.dtype, np.number) or maxiter.shape != tuple()
+            or np.iscomplex(maxiter)):
+        raise ValueError(message)
+    maxiter_int = int(maxiter[()])
+    if not maxiter == maxiter_int or maxiter < 0:
+        raise ValueError(message)
+
+    if not np.all((xmin <= xl0) & (xl0 < xr0) & (xr0 <= xmax)):
+        raise ValueError('`xmin <= xl0 < xr0 <= xmax` must be True (elementwise).')
+
+    return func, xl0, xr0, xmin, xmax, factor, args, maxiter
+
+
+def _bracket_root(func, xl0, xr0=None, *, xmin=None, xmax=None, factor=None,
+                  args=(), maxiter=1000):
+    """Bracket the root of a monotonic scalar function of one variable
+
+    This function works elementwise when `xl0`, `xr0`, `xmin`, `xmax`, `factor`, and
+    the elements of `args` are broadcastable arrays.
+
+    Parameters
+    ----------
+    func : callable
+        The function for which the root is to be bracketed.
+        The signature must be::
+
+            func(x: ndarray, *args) -> ndarray
+
+        where each element of ``x`` is a finite real and ``args`` is a tuple,
+        which may contain an arbitrary number of arrays that are broadcastable
+        with `x`. ``func`` must be an elementwise function: each element
+        ``func(x)[i]`` must equal ``func(x[i])`` for all indices ``i``.
+    xl0, xr0: float array_like
+        Starting guess of bracket, which need not contain a root. If `xr0` is
+        not provided, ``xr0 = xl0 + 1``. Must be broadcastable with one another.
+    xmin, xmax : float array_like, optional
+        Minimum and maximum allowable endpoints of the bracket, inclusive. Must
+        be broadcastable with `xl0` and `xr0`.
+    factor : float array_like, default: 2
+        The factor used to grow the bracket. See notes for details.
+    args : tuple, optional
+        Additional positional arguments to be passed to `func`.  Must be arrays
+        broadcastable with `xl0`, `xr0`, `xmin`, and `xmax`. If the callable to be
+        bracketed requires arguments that are not broadcastable with these
+        arrays, wrap that callable with `func` such that `func` accepts
+        only `x` and broadcastable arrays.
+    maxiter : int, optional
+        The maximum number of iterations of the algorithm to perform.
+
+    Returns
+    -------
+    res : _RichResult
+        An instance of `scipy._lib._util._RichResult` with the following
+        attributes. The descriptions are written as though the values will be
+        scalars; however, if `func` returns an array, the outputs will be
+        arrays of the same shape.
+
+        xl, xr : float
+            The lower and upper ends of the bracket, if the algorithm
+            terminated successfully.
+        fl, fr : float
+            The function value at the lower and upper ends of the bracket.
+        nfev : int
+            The number of function evaluations required to find the bracket.
+            This is distinct from the number of times `func` is *called*
+            because the function may evaluated at multiple points in a single
+            call.
+        nit : int
+            The number of iterations of the algorithm that were performed.
+        status : int
+            An integer representing the exit status of the algorithm.
+
+            - ``0`` : The algorithm produced a valid bracket.
+            - ``-1`` : The bracket expanded to the allowable limits without finding a bracket.
+            - ``-2`` : The maximum number of iterations was reached.
+            - ``-3`` : A non-finite value was encountered.
+            - ``-4`` : Iteration was terminated by `callback`.
+            - ``1`` : The algorithm is proceeding normally (in `callback` only).
+            - ``2`` : A bracket was found in the opposite search direction (in `callback` only).
+
+        success : bool
+            ``True`` when the algorithm terminated successfully (status ``0``).
+
+    Notes
+    -----
+    This function generalizes an algorithm found in pieces throughout
+    `scipy.stats`. The strategy is to iteratively grow the bracket `(l, r)`
+     until ``func(l) < 0 < func(r)``. The bracket grows to the left as follows.
+
+    - If `xmin` is not provided, the distance between `xl0` and `l` is iteratively
+      increased by `factor`.
+    - If `xmin` is provided, the distance between `xmin` and `l` is iteratively
+      decreased by `factor`. Note that this also *increases* the bracket size.
+
+    Growth of the bracket to the right is analogous.
+
+    Growth of the bracket in one direction stops when the endpoint is no longer
+    finite, the function value at the endpoint is no longer finite, or the
+    endpoint reaches its limiting value (`xmin` or `xmax`). Iteration terminates
+    when the bracket stops growing in both directions, the bracket surrounds
+    the root, or a root is found (accidentally).
+
+    If two brackets are found - that is, a bracket is found on both sides in
+    the same iteration, the smaller of the two is returned.
+    If roots of the function are found, both `l` and `r` are set to the
+    leftmost root.
+
+    """  # noqa: E501
+    # Todo:
+    # - find bracket with sign change in specified direction
+    # - Add tolerance
+    # - allow factor < 1?
+
+    callback = None  # works; I just don't want to test it
+    temp = _bracket_root_iv(func, xl0, xr0, xmin, xmax, factor, args, maxiter)
+    func, xl0, xr0, xmin, xmax, factor, args, maxiter = temp
+
+    xs = (xl0, xr0)
+    temp = eim._initialize(func, xs, args)
+    func, xs, fs, args, shape, dtype = temp  # line split for PEP8
+
+    # The approach is to treat the left and right searches as though they were
+    # (almost) totally independent one-sided bracket searches. (The interaction
+    # is considered when checking for termination and preparing the result
+    # object.)
+    # `x` is the "moving" end of the bracket
+    x = np.concatenate(xs)
+    f = np.concatenate(fs)
+    n = len(x) // 2
+
+    # `x_last` is the previous location of the moving end of the bracket. If
+    # the signs of `f` and `f_last` are different, `x` and `x_last` form a
+    # bracket.
+    x_last = np.concatenate((x[n:], x[:n]))
+    f_last = np.concatenate((f[n:], f[:n]))
+    # `x0` is the "fixed" end of the bracket.
+    x0 = x_last
+    # We don't need to retain the corresponding function value, since the
+    # fixed end of the bracket is only needed to compute the new value of the
+    # moving end; it is never returned.
+
+    xmin = np.broadcast_to(xmin, shape).astype(dtype, copy=False).ravel()
+    xmax = np.broadcast_to(xmax, shape).astype(dtype, copy=False).ravel()
+    limit = np.concatenate((xmin, xmax))
+
+    factor = np.broadcast_to(factor, shape).astype(dtype, copy=False).ravel()
+    factor = np.concatenate((factor, factor))
+
+    active = np.arange(2*n)
+    args = [np.concatenate((arg, arg)) for arg in args]
+
+    # This is needed due to inner workings of `eim._loop`.
+    # We're abusing it a tiny bit.
+    shape = shape + (2,)
+
+    # `d` is for "distance".
+    # For searches without a limit, the distance between the fixed end of the
+    # bracket `x0` and the moving end `x` will grow by `factor` each iteration.
+    # For searches with a limit, the distance between the `limit` and moving
+    # end of the bracket `x` will shrink by `factor` each iteration.
+    i = np.isinf(limit)
+    ni = ~i
+    d = np.zeros_like(x)
+    d[i] = x[i] - x0[i]
+    d[ni] = limit[ni] - x[ni]
+
+    status = np.full_like(x, eim._EINPROGRESS, dtype=int)  # in progress
+    nit, nfev = 0, 1  # one function evaluation per side performed above
+
+    work = _RichResult(x=x, x0=x0, f=f, limit=limit, factor=factor,
+                       active=active, d=d, x_last=x_last, f_last=f_last,
+                       nit=nit, nfev=nfev, status=status, args=args,
+                       xl=None, xr=None, fl=None, fr=None, n=n)
+    res_work_pairs = [('status', 'status'), ('xl', 'xl'), ('xr', 'xr'),
+                      ('nit', 'nit'), ('nfev', 'nfev'), ('fl', 'fl'),
+                      ('fr', 'fr'), ('x', 'x'), ('f', 'f'),
+                      ('x_last', 'x_last'), ('f_last', 'f_last')]
+
+    def pre_func_eval(work):
+        # Initialize moving end of bracket
+        x = np.zeros_like(work.x)
+
+        # Unlimited brackets grow by `factor` by increasing distance from fixed
+        # end to moving end.
+        i = np.isinf(work.limit)  # indices of unlimited brackets
+        work.d[i] *= work.factor[i]
+        x[i] = work.x0[i] + work.d[i]
+
+        # Limited brackets grow by decreasing the distance from the limit to
+        # the moving end.
+        ni = ~i  # indices of limited brackets
+        work.d[ni] /= work.factor[ni]
+        x[ni] = work.limit[ni] - work.d[ni]
+
+        return x
+
+    def post_func_eval(x, f, work):
+        # Keep track of the previous location of the moving end so that we can
+        # return a narrower bracket. (The alternative is to remember the
+        # original fixed end, but then the bracket would be wider than needed.)
+        work.x_last = work.x
+        work.f_last = work.f
+        work.x = x
+        work.f = f
+
+    def check_termination(work):
+        stop = np.zeros_like(work.x, dtype=bool)
+
+        # Condition 1: a valid bracket (or the root itself) has been found
+        sf = np.sign(work.f)
+        sf_last = np.sign(work.f_last)
+        i = (sf_last == -sf) | (sf_last == 0) | (sf == 0)
+        work.status[i] = eim._ECONVERGED
+        stop[i] = True
+
+        # Condition 2: the other side's search found a valid bracket.
+        # (If we just found a bracket with the rightward search, we can stop
+        #  the leftward search, and vice-versa.)
+        # To do this, we need to set the status of the other side's search;
+        # this is tricky because `work.status` contains only the *active*
+        # elements, so we don't immediately know the index of the element we
+        # need to set - or even if it's still there. (That search may have
+        # terminated already, e.g. by reaching its `limit`.)
+        # To facilitate this, `work.active` contains a unit integer index of
+        # each search. Index `k` (`k < n)` and `k + n` correspond with a
+        # leftward and rightward search, respectively. Elements are removed
+        # from `work.active` just as they are removed from `work.status`, so
+        # we use `work.active` to help find the right location in
+        # `work.status`.
+        # Get the integer indices of the elements that can also stop
+        also_stop = (work.active[i] + work.n) % (2*work.n)
+        # Check whether they are still active.
+        # To start, we need to find out where in `work.active` they would
+        # appear if they are indeed there.
+        j = np.searchsorted(work.active, also_stop)
+        # If the location exceeds the length of the `work.active`, they are
+        # not there.
+        j = j[j < len(work.active)]
+        # Check whether they are still there.
+        j = j[also_stop == work.active[j]]
+        # Now convert these to boolean indices to use with `work.status`.
+        i = np.zeros_like(stop)
+        i[j] = True  # boolean indices of elements that can also stop
+        i = i & ~stop
+        work.status[i] = _ESTOPONESIDE
+        stop[i] = True
+
+        # Condition 3: moving end of bracket reaches limit
+        i = (work.x == work.limit) & ~stop
+        work.status[i] = _ELIMITS
+        stop[i] = True
+
+        # Condition 4: non-finite value encountered
+        i = ~(np.isfinite(work.x) & np.isfinite(work.f)) & ~stop
+        work.status[i] = eim._EVALUEERR
+        stop[i] = True
+
+        return stop
+
+    def post_termination_check(work):
+        pass
+
+    def customize_result(res, shape):
+        n = len(res['x']) // 2
+
+        # To avoid ambiguity, below we refer to `xl0`, the initial left endpoint
+        # as `a` and `xr0`, the initial right endpoint, as `b`.
+        # Because we treat the two one-sided searches as though they were
+        # independent, what we keep track of in `work` and what we want to
+        # return in `res` look quite different. Combine the results from the
+        # two one-sided searches before reporting the results to the user.
+        # - "a" refers to the leftward search (the moving end started at `a`)
+        # - "b" refers to the rightward search (the moving end started at `b`)
+        # - "l" refers to the left end of the bracket (closer to -oo)
+        # - "r" refers to the right end of the bracket (closer to +oo)
+        xal = res['x'][:n]
+        xar = res['x_last'][:n]
+        xbl = res['x_last'][n:]
+        xbr = res['x'][n:]
+
+        fal = res['f'][:n]
+        far = res['f_last'][:n]
+        fbl = res['f_last'][n:]
+        fbr = res['f'][n:]
+
+        # Initialize the brackets and corresponding function values to return
+        # to the user. Brackets may not be valid (e.g. there is no root,
+        # there weren't enough iterations, NaN encountered), but we still need
+        # to return something. One option would be all NaNs, but what I've
+        # chosen here is the left- and right-most points at which the function
+        # has been evaluated. This gives the user some information about what
+        # interval of the real line has been searched and shows that there is
+        # no sign change between the two ends.
+        xl = xal.copy()
+        fl = fal.copy()
+        xr = xbr.copy()
+        fr = fbr.copy()
+
+        # `status` indicates whether the bracket is valid or not. If so,
+        # we want to adjust the bracket we return to be the narrowest possible
+        # given the points at which we evaluated the function.
+        # For example if bracket "a" is valid and smaller than bracket "b" OR
+        # if bracket "a" is valid and bracket "b" is not valid, we want to
+        # return bracket "a" (and vice versa).
+        sa = res['status'][:n]
+        sb = res['status'][n:]
+
+        da = xar - xal
+        db = xbr - xbl
+
+        i1 = ((da <= db) & (sa == 0)) | ((sa == 0) & (sb != 0))
+        i2 = ((db <= da) & (sb == 0)) | ((sb == 0) & (sa != 0))
+
+        xr[i1] = xar[i1]
+        fr[i1] = far[i1]
+        xl[i2] = xbl[i2]
+        fl[i2] = fbl[i2]
+
+        # Finish assembling the result object
+        res['xl'] = xl
+        res['xr'] = xr
+        res['fl'] = fl
+        res['fr'] = fr
+
+        res['nit'] = np.maximum(res['nit'][:n], res['nit'][n:])
+        res['nfev'] = res['nfev'][:n] + res['nfev'][n:]
+        # If the status on one side is zero, the status is zero. In any case,
+        # report the status from one side only.
+        res['status'] = np.choose(sa == 0, (sb, sa))
+        res['success'] = (res['status'] == 0)
+
+        del res['x']
+        del res['f']
+        del res['x_last']
+        del res['f_last']
+
+        return shape[:-1]
+
+    return eim._loop(work, callback, shape, maxiter, func, args, dtype,
+                     pre_func_eval, post_func_eval, check_termination,
+                     post_termination_check, customize_result, res_work_pairs)
+
+
+def _bracket_minimum_iv(func, xm0, xl0, xr0, xmin, xmax, factor, args, maxiter):
+
+    if not callable(func):
+        raise ValueError('`func` must be callable.')
+
+    if not np.iterable(args):
+        args = (args,)
+
+    xm0 = np.asarray(xm0)[()]
+    if not np.issubdtype(xm0.dtype, np.number) or np.iscomplex(xm0).any():
+        raise ValueError('`xm0` must be numeric and real.')
+
+    xmin = -np.inf if xmin is None else xmin
+    xmax = np.inf if xmax is None else xmax
+
+    xl0_not_supplied = False
+    if xl0 is None:
+        xl0 = xm0 - 0.5
+        xl0_not_supplied = True
+
+    xr0_not_supplied = False
+    if xr0 is None:
+        xr0 = xm0 + 0.5
+        xr0_not_supplied = True
+
+    factor = 2.0 if factor is None else factor
+    xl0, xm0, xr0, xmin, xmax, factor = np.broadcast_arrays(
+        xl0, xm0, xr0, xmin, xmax, factor
+    )
+
+    if not np.issubdtype(xl0.dtype, np.number) or np.iscomplex(xl0).any():
+        raise ValueError('`xl0` must be numeric and real.')
+
+    if not np.issubdtype(xr0.dtype, np.number) or np.iscomplex(xr0).any():
+        raise ValueError('`xr0` must be numeric and real.')
+
+    if not np.issubdtype(xmin.dtype, np.number) or np.iscomplex(xmin).any():
+        raise ValueError('`xmin` must be numeric and real.')
+
+    if not np.issubdtype(xmax.dtype, np.number) or np.iscomplex(xmax).any():
+        raise ValueError('`xmax` must be numeric and real.')
+
+    if not np.issubdtype(factor.dtype, np.number) or np.iscomplex(factor).any():
+        raise ValueError('`factor` must be numeric and real.')
+    if not np.all(factor > 1):
+        raise ValueError('All elements of `factor` must be greater than 1.')
+
+    # Default choices for xl or xr might have exceeded xmin or xmax. Adjust
+    # to make sure this doesn't happen. We replace with copies because xl, and xr
+    # are read-only views produced by broadcast_arrays.
+    if xl0_not_supplied:
+        xl0 = xl0.copy()
+        cond = ~np.isinf(xmin) & (xl0 < xmin)
+        xl0[cond] = (
+            xm0[cond] - xmin[cond]
+        ) / np.array(16, dtype=xl0.dtype)
+    if xr0_not_supplied:
+        xr0 = xr0.copy()
+        cond = ~np.isinf(xmax) & (xmax < xr0)
+        xr0[cond] = (
+            xmax[cond] - xm0[cond]
+        ) / np.array(16, dtype=xr0.dtype)
+
+    maxiter = np.asarray(maxiter)
+    message = '`maxiter` must be a non-negative integer.'
+    if (not np.issubdtype(maxiter.dtype, np.number) or maxiter.shape != tuple()
+            or np.iscomplex(maxiter)):
+        raise ValueError(message)
+    maxiter_int = int(maxiter[()])
+    if not maxiter == maxiter_int or maxiter < 0:
+        raise ValueError(message)
+
+    if not np.all((xmin <= xl0) & (xl0 < xm0) & (xm0 < xr0) & (xr0 <= xmax)):
+        raise ValueError(
+            '`xmin <= xl0 < xm0 < xr0 <= xmax` must be True (elementwise).'
+        )
+
+    return func, xm0, xl0, xr0, xmin, xmax, factor, args, maxiter
+
+
+def _bracket_minimum(func, xm0, *, xl0=None, xr0=None, xmin=None, xmax=None,
+                     factor=None, args=(), maxiter=1000):
+    """Bracket the minimum of a unimodal scalar function of one variable
+
+    This function works elementwise when `xm0`, `xl0`, `xr0`, `xmin`, `xmax`,
+    and the elements of `args` are broadcastable arrays.
+
+    Parameters
+    ----------
+    func : callable
+        The function for which the minimum is to be bracketed.
+        The signature must be::
+
+            func(x: ndarray, *args) -> ndarray
+
+        where each element of ``x`` is a finite real and ``args`` is a tuple,
+        which may contain an arbitrary number of arrays that are broadcastable
+        with ``x``. `func` must be an elementwise function: each element
+        ``func(x)[i]`` must equal ``func(x[i])`` for all indices `i`.
+    xm0: float array_like
+        Starting guess for middle point of bracket.
+    xl0, xr0: float array_like, optional
+        Starting guesses for left and right endpoints of the bracket. Must be
+        broadcastable with one another and with `xm0`.
+    xmin, xmax : float array_like, optional
+        Minimum and maximum allowable endpoints of the bracket, inclusive. Must
+        be broadcastable with `xl0`, `xm0`, and `xr0`.
+    factor : float array_like, optional
+        Controls expansion of bracket endpoint in downhill direction. Works
+        differently in the cases where a limit is set in the downhill direction
+        with `xmax` or `xmin`. See Notes.
+    args : tuple, optional
+        Additional positional arguments to be passed to `func`.  Must be arrays
+        broadcastable with `xl0`, `xm0`, `xr0`, `xmin`, and `xmax`. If the
+        callable to be bracketed requires arguments that are not broadcastable
+        with these arrays, wrap that callable with `func` such that `func`
+        accepts only ``x`` and broadcastable arrays.
+    maxiter : int, optional
+        The maximum number of iterations of the algorithm to perform. The number
+        of function evaluations is three greater than the number of iterations.
+
+    Returns
+    -------
+    res : _RichResult
+        An instance of `scipy._lib._util._RichResult` with the following
+        attributes. The descriptions are written as though the values will be
+        scalars; however, if `func` returns an array, the outputs will be
+        arrays of the same shape.
+
+        xl, xm, xr : float
+            The left, middle, and right points of the bracket, if the algorithm
+            terminated successfully.
+        fl, fm, fr : float
+            The function value at the left, middle, and right points of the bracket.
+        nfev : int
+            The number of function evaluations required to find the bracket.
+        nit : int
+            The number of iterations of the algorithm that were performed.
+        status : int
+            An integer representing the exit status of the algorithm.
+
+            - ``0`` : The algorithm produced a valid bracket.
+            - ``-1`` : The bracket expanded to the allowable limits. Assuming
+                       unimodality, this implies the endpoint at the limit is a
+                       minimizer.
+            - ``-2`` : The maximum number of iterations was reached.
+            - ``-3`` : A non-finite value was encountered.
+
+        success : bool
+            ``True`` when the algorithm terminated successfully (status ``0``).
+
+    Notes
+    -----
+    Similar to `scipy.optimize.bracket`, this function seeks to find real
+    points ``xl < xm < xr`` such that ``f(xl) >= f(xm)`` and ``f(xr) >= f(xm)``,
+    where at least one of the inequalities is strict. Unlike `scipy.optimize.bracket`,
+    this function can operate in a vectorized manner on array input, so long as
+    the input arrays are broadcastable with each other. Also unlike
+    `scipy.optimize.bracket`, users may specify minimum and maximum endpoints
+    for the desired bracket.
+
+    Given an initial trio of points ``xl = xl0``, ``xm = xm0``, ``xr = xr0``,
+    the algorithm checks if these points already give a valid bracket. If not,
+    a new endpoint, ``w`` is chosen in the "downhill" direction, ``xm`` becomes the new
+    opposite endpoint, and either `xl` or `xr` becomes the new middle point,
+    depending on which direction is downhill. The algorithm repeats from here.
+
+    The new endpoint `w` is chosen differently depending on whether or not a
+    boundary `xmin` or `xmax` has been set in the downhill direction. Without
+    loss of generality, suppose the downhill direction is to the right, so that
+    ``f(xl) > f(xm) > f(xr)``. If there is no boundary to the right, then `w`
+    is chosen to be ``xr + factor * (xr - xm)`` where `factor` is controlled by
+    the user (defaults to 2.0) so that step sizes increase in geometric proportion.
+    If there is a boundary, `xmax` in this case, then `w` is chosen to be
+    ``xmax - (xmax - xr)/factor``, with steps slowing to a stop at
+    `xmax`. This cautious approach ensures that a minimum near but distinct from
+    the boundary isn't missed while also detecting whether or not the `xmax` is
+    a minimizer when `xmax` is reached after a finite number of steps.
+    """  # noqa: E501
+    callback = None  # works; I just don't want to test it
+
+    temp = _bracket_minimum_iv(func, xm0, xl0, xr0, xmin, xmax, factor, args, maxiter)
+    func, xm0, xl0, xr0, xmin, xmax, factor, args, maxiter = temp
+
+    xs = (xl0, xm0, xr0)
+    func, xs, fs, args, shape, dtype = eim._initialize(func, xs, args)
+
+    xl0, xm0, xr0 = xs
+    fl0, fm0, fr0 = fs
+    xmin = np.broadcast_to(xmin, shape).astype(dtype, copy=False).ravel()
+    xmax = np.broadcast_to(xmax, shape).astype(dtype, copy=False).ravel()
+    # We will modify factor later on so make a copy. np.broadcast_to returns
+    # a read-only view.
+    factor = np.broadcast_to(factor, shape).astype(dtype, copy=True).ravel()
+
+    # To simplify the logic, swap xl and xr if f(xl) < f(xr). We should always be
+    # marching downhill in the direction from xl to xr.
+    comp = fl0 < fr0
+    xl0[comp], xr0[comp] = xr0[comp], xl0[comp]
+    fl0[comp], fr0[comp] = fr0[comp], fl0[comp]
+    # We only need the boundary in the direction we're traveling.
+    limit = np.where(comp, xmin, xmax)
+
+    unlimited = np.isinf(limit)
+    limited = ~unlimited
+    step = np.empty_like(xl0)
+
+    step[unlimited] = (xr0[unlimited] - xm0[unlimited])
+    step[limited] = (limit[limited] - xr0[limited])
+
+    # Step size is divided by factor for case where there is a limit.
+    factor[limited] = 1 / factor[limited]
+
+    status = np.full_like(xl0, eim._EINPROGRESS, dtype=int)
+    nit, nfev = 0, 3
+
+    work = _RichResult(xl=xl0, xm=xm0, xr=xr0, xr0=xr0, fl=fl0, fm=fm0, fr=fr0,
+                       step=step, limit=limit, limited=limited, factor=factor, nit=nit,
+                       nfev=nfev, status=status, args=args)
+
+    res_work_pairs = [('status', 'status'), ('xl', 'xl'), ('xm', 'xm'), ('xr', 'xr'),
+                      ('nit', 'nit'), ('nfev', 'nfev'), ('fl', 'fl'), ('fm', 'fm'),
+                      ('fr', 'fr')]
+
+    def pre_func_eval(work):
+        work.step *= work.factor
+        x = np.empty_like(work.xr)
+        x[~work.limited] = work.xr0[~work.limited] + work.step[~work.limited]
+        x[work.limited] = work.limit[work.limited] - work.step[work.limited]
+        # Since the new bracket endpoint is calculated from an offset with the
+        # limit, it may be the case that the new endpoint equals the old endpoint,
+        # when the old endpoint is sufficiently close to the limit. We use the
+        # limit itself as the new endpoint in these cases.
+        x[work.limited] = np.where(
+            x[work.limited] == work.xr[work.limited],
+            work.limit[work.limited],
+            x[work.limited],
+        )
+        return x
+
+    def post_func_eval(x, f, work):
+        work.xl, work.xm, work.xr = work.xm, work.xr, x
+        work.fl, work.fm, work.fr = work.fm, work.fr, f
+
+    def check_termination(work):
+        # Condition 1: A valid bracket has been found.
+        stop = (
+            (work.fl >= work.fm) & (work.fr > work.fm)
+            | (work.fl > work.fm) & (work.fr >= work.fm)
+        )
+        work.status[stop] = eim._ECONVERGED
+
+        # Condition 2: Moving end of bracket reaches limit.
+        i = (work.xr == work.limit) & ~stop
+        work.status[i] = _ELIMITS
+        stop[i] = True
+
+        # Condition 3: non-finite value encountered
+        i = ~(np.isfinite(work.xr) & np.isfinite(work.fr)) & ~stop
+        work.status[i] = eim._EVALUEERR
+        stop[i] = True
+
+        return stop
+
+    def post_termination_check(work):
+        pass
+
+    def customize_result(res, shape):
+        # Reorder entries of xl and xr if they were swapped due to f(xl0) < f(xr0).
+        comp = res['xl'] > res['xr']
+        res['xl'][comp], res['xr'][comp] = res['xr'][comp], res['xl'][comp]
+        res['fl'][comp], res['fr'][comp] = res['fr'][comp], res['fl'][comp]
+        return shape
+
+    return eim._loop(work, callback, shape,
+                     maxiter, func, args, dtype,
+                     pre_func_eval, post_func_eval,
+                     check_termination, post_termination_check,
+                     customize_result, res_work_pairs)

env-llmeval/lib/python3.10/site-packages/scipy/optimize/_chandrupatla.py

@@ -0,0 +1,524 @@
+import numpy as np
+from ._zeros_py import _xtol, _rtol, _iter
+import scipy._lib._elementwise_iterative_method as eim
+from scipy._lib._util import _RichResult
+
+def _chandrupatla(func, a, b, *, args=(), xatol=_xtol, xrtol=_rtol,
+                  fatol=None, frtol=0, maxiter=_iter, callback=None):
+    """Find the root of an elementwise function using Chandrupatla's algorithm.
+
+    For each element of the output of `func`, `chandrupatla` seeks the scalar
+    root that makes the element 0. This function allows for `a`, `b`, and the
+    output of `func` to be of any broadcastable shapes.
+
+    Parameters
+    ----------
+    func : callable
+        The function whose root is desired. The signature must be::
+
+            func(x: ndarray, *args) -> ndarray
+
+         where each element of ``x`` is a finite real and ``args`` is a tuple,
+         which may contain an arbitrary number of components of any type(s).
+         ``func`` must be an elementwise function: each element ``func(x)[i]``
+         must equal ``func(x[i])`` for all indices ``i``. `_chandrupatla`
+         seeks an array ``x`` such that ``func(x)`` is an array of zeros.
+    a, b : array_like
+        The lower and upper bounds of the root of the function. Must be
+        broadcastable with one another.
+    args : tuple, optional
+        Additional positional arguments to be passed to `func`.
+    xatol, xrtol, fatol, frtol : float, optional
+        Absolute and relative tolerances on the root and function value.
+        See Notes for details.
+    maxiter : int, optional
+        The maximum number of iterations of the algorithm to perform.
+    callback : callable, optional
+        An optional user-supplied function to be called before the first
+        iteration and after each iteration.
+        Called as ``callback(res)``, where ``res`` is a ``_RichResult``
+        similar to that returned by `_chandrupatla` (but containing the current
+        iterate's values of all variables). If `callback` raises a
+        ``StopIteration``, the algorithm will terminate immediately and
+        `_chandrupatla` will return a result.
+
+    Returns
+    -------
+    res : _RichResult
+        An instance of `scipy._lib._util._RichResult` with the following
+        attributes. The descriptions are written as though the values will be
+        scalars; however, if `func` returns an array, the outputs will be
+        arrays of the same shape.
+
+        x : float
+            The root of the function, if the algorithm terminated successfully.
+        nfev : int
+            The number of times the function was called to find the root.
+        nit : int
+            The number of iterations of Chandrupatla's algorithm performed.
+        status : int
+            An integer representing the exit status of the algorithm.
+            ``0`` : The algorithm converged to the specified tolerances.
+            ``-1`` : The algorithm encountered an invalid bracket.
+            ``-2`` : The maximum number of iterations was reached.
+            ``-3`` : A non-finite value was encountered.
+            ``-4`` : Iteration was terminated by `callback`.
+            ``1`` : The algorithm is proceeding normally (in `callback` only).
+        success : bool
+            ``True`` when the algorithm terminated successfully (status ``0``).
+        fun : float
+            The value of `func` evaluated at `x`.
+        xl, xr : float
+            The lower and upper ends of the bracket.
+        fl, fr : float
+            The function value at the lower and upper ends of the bracket.
+
+    Notes
+    -----
+    Implemented based on Chandrupatla's original paper [1]_.
+
+    If ``xl`` and ``xr`` are the left and right ends of the bracket,
+    ``xmin = xl if abs(func(xl)) <= abs(func(xr)) else xr``,
+    and ``fmin0 = min(func(a), func(b))``, then the algorithm is considered to
+    have converged when ``abs(xr - xl) < xatol + abs(xmin) * xrtol`` or
+    ``fun(xmin) <= fatol + abs(fmin0) * frtol``. This is equivalent to the
+    termination condition described in [1]_ with ``xrtol = 4e-10``,
+    ``xatol = 1e-5``, and ``fatol = frtol = 0``. The default values are
+    ``xatol = 2e-12``, ``xrtol = 4 * np.finfo(float).eps``, ``frtol = 0``,
+    and ``fatol`` is the smallest normal number of the ``dtype`` returned
+    by ``func``.
+
+    References
+    ----------
+
+    .. [1] Chandrupatla, Tirupathi R.
+        "A new hybrid quadratic/bisection algorithm for finding the zero of a
+        nonlinear function without using derivatives".
+        Advances in Engineering Software, 28(3), 145-149.
+        https://doi.org/10.1016/s0965-9978(96)00051-8
+
+    See Also
+    --------
+    brentq, brenth, ridder, bisect, newton
+
+    Examples
+    --------
+    >>> from scipy import optimize
+    >>> def f(x, c):
+    ...     return x**3 - 2*x - c
+    >>> c = 5
+    >>> res = optimize._chandrupatla._chandrupatla(f, 0, 3, args=(c,))
+    >>> res.x
+    2.0945514818937463
+
+    >>> c = [3, 4, 5]
+    >>> res = optimize._chandrupatla._chandrupatla(f, 0, 3, args=(c,))
+    >>> res.x
+    array([1.8932892 , 2.        , 2.09455148])
+
+    """
+    res = _chandrupatla_iv(func, args, xatol, xrtol,
+                           fatol, frtol, maxiter, callback)
+    func, args, xatol, xrtol, fatol, frtol, maxiter, callback = res
+
+    # Initialization
+    temp = eim._initialize(func, (a, b), args)
+    func, xs, fs, args, shape, dtype = temp
+    x1, x2 = xs
+    f1, f2 = fs
+    status = np.full_like(x1, eim._EINPROGRESS, dtype=int)  # in progress
+    nit, nfev = 0, 2  # two function evaluations performed above
+    xatol = _xtol if xatol is None else xatol
+    xrtol = _rtol if xrtol is None else xrtol
+    fatol = np.finfo(dtype).tiny if fatol is None else fatol
+    frtol = frtol * np.minimum(np.abs(f1), np.abs(f2))
+    work = _RichResult(x1=x1, f1=f1, x2=x2, f2=f2, x3=None, f3=None, t=0.5,
+                       xatol=xatol, xrtol=xrtol, fatol=fatol, frtol=frtol,
+                       nit=nit, nfev=nfev, status=status)
+    res_work_pairs = [('status', 'status'), ('x', 'xmin'), ('fun', 'fmin'),
+                      ('nit', 'nit'), ('nfev', 'nfev'), ('xl', 'x1'),
+                      ('fl', 'f1'), ('xr', 'x2'), ('fr', 'f2')]
+
+    def pre_func_eval(work):
+        # [1] Figure 1 (first box)
+        x = work.x1 + work.t * (work.x2 - work.x1)
+        return x
+
+    def post_func_eval(x, f, work):
+        # [1] Figure 1 (first diamond and boxes)
+        # Note: y/n are reversed in figure; compare to BASIC in appendix
+        work.x3, work.f3 = work.x2.copy(), work.f2.copy()
+        j = np.sign(f) == np.sign(work.f1)
+        nj = ~j
+        work.x3[j], work.f3[j] = work.x1[j], work.f1[j]
+        work.x2[nj], work.f2[nj] = work.x1[nj], work.f1[nj]
+        work.x1, work.f1 = x, f
+
+    def check_termination(work):
+        # [1] Figure 1 (second diamond)
+        # Check for all terminal conditions and record statuses.
+
+        # See [1] Section 4 (first two sentences)
+        i = np.abs(work.f1) < np.abs(work.f2)
+        work.xmin = np.choose(i, (work.x2, work.x1))
+        work.fmin = np.choose(i, (work.f2, work.f1))
+        stop = np.zeros_like(work.x1, dtype=bool)  # termination condition met
+
+        # This is the convergence criterion used in bisect. Chandrupatla's
+        # criterion is equivalent to this except with a factor of 4 on `xrtol`.
+        work.dx = abs(work.x2 - work.x1)
+        work.tol = abs(work.xmin) * work.xrtol + work.xatol
+        i = work.dx < work.tol
+        # Modify in place to incorporate tolerance on function value. Note that
+        # `frtol` has been redefined as `frtol = frtol * np.minimum(f1, f2)`,
+        # where `f1` and `f2` are the function evaluated at the original ends of
+        # the bracket.
+        i |= np.abs(work.fmin) <= work.fatol + work.frtol
+        work.status[i] = eim._ECONVERGED
+        stop[i] = True
+
+        i = (np.sign(work.f1) == np.sign(work.f2)) & ~stop
+        work.xmin[i], work.fmin[i], work.status[i] = np.nan, np.nan, eim._ESIGNERR
+        stop[i] = True
+
+        i = ~((np.isfinite(work.x1) & np.isfinite(work.x2)
+               & np.isfinite(work.f1) & np.isfinite(work.f2)) | stop)
+        work.xmin[i], work.fmin[i], work.status[i] = np.nan, np.nan, eim._EVALUEERR
+        stop[i] = True
+
+        return stop
+
+    def post_termination_check(work):
+        # [1] Figure 1 (third diamond and boxes / Equation 1)
+        xi1 = (work.x1 - work.x2) / (work.x3 - work.x2)
+        phi1 = (work.f1 - work.f2) / (work.f3 - work.f2)
+        alpha = (work.x3 - work.x1) / (work.x2 - work.x1)
+        j = ((1 - np.sqrt(1 - xi1)) < phi1) & (phi1 < np.sqrt(xi1))
+
+        f1j, f2j, f3j, alphaj = work.f1[j], work.f2[j], work.f3[j], alpha[j]
+        t = np.full_like(alpha, 0.5)
+        t[j] = (f1j / (f1j - f2j) * f3j / (f3j - f2j)
+                - alphaj * f1j / (f3j - f1j) * f2j / (f2j - f3j))
+
+        # [1] Figure 1 (last box; see also BASIC in appendix with comment
+        # "Adjust T Away from the Interval Boundary")
+        tl = 0.5 * work.tol / work.dx
+        work.t = np.clip(t, tl, 1 - tl)
+
+    def customize_result(res, shape):
+        xl, xr, fl, fr = res['xl'], res['xr'], res['fl'], res['fr']
+        i = res['xl'] < res['xr']
+        res['xl'] = np.choose(i, (xr, xl))
+        res['xr'] = np.choose(i, (xl, xr))
+        res['fl'] = np.choose(i, (fr, fl))
+        res['fr'] = np.choose(i, (fl, fr))
+        return shape
+
+    return eim._loop(work, callback, shape, maxiter, func, args, dtype,
+                     pre_func_eval, post_func_eval, check_termination,
+                     post_termination_check, customize_result, res_work_pairs)
+
+
+def _chandrupatla_iv(func, args, xatol, xrtol,
+                     fatol, frtol, maxiter, callback):
+    # Input validation for `_chandrupatla`
+
+    if not callable(func):
+        raise ValueError('`func` must be callable.')
+
+    if not np.iterable(args):
+        args = (args,)
+
+    tols = np.asarray([xatol if xatol is not None else 1,
+                       xrtol if xrtol is not None else 1,
+                       fatol if fatol is not None else 1,
+                       frtol if frtol is not None else 1])
+    if (not np.issubdtype(tols.dtype, np.number) or np.any(tols < 0)
+            or np.any(np.isnan(tols)) or tols.shape != (4,)):
+        raise ValueError('Tolerances must be non-negative scalars.')
+
+    maxiter_int = int(maxiter)
+    if maxiter != maxiter_int or maxiter < 0:
+        raise ValueError('`maxiter` must be a non-negative integer.')
+
+    if callback is not None and not callable(callback):
+        raise ValueError('`callback` must be callable.')
+
+    return func, args, xatol, xrtol, fatol, frtol, maxiter, callback
+
+
+def _chandrupatla_minimize(func, x1, x2, x3, *, args=(), xatol=None,
+                           xrtol=None, fatol=None, frtol=None, maxiter=100,
+                           callback=None):
+    """Find the minimizer of an elementwise function.
+
+    For each element of the output of `func`, `_chandrupatla_minimize` seeks
+    the scalar minimizer that minimizes the element. This function allows for
+    `x1`, `x2`, `x3`, and the elements of `args` to be arrays of any
+    broadcastable shapes.
+
+    Parameters
+    ----------
+    func : callable
+        The function whose minimizer is desired. The signature must be::
+
+            func(x: ndarray, *args) -> ndarray
+
+         where each element of ``x`` is a finite real and ``args`` is a tuple,
+         which may contain an arbitrary number of arrays that are broadcastable
+         with `x`. ``func`` must be an elementwise function: each element
+         ``func(x)[i]`` must equal ``func(x[i])`` for all indices ``i``.
+         `_chandrupatla` seeks an array ``x`` such that ``func(x)`` is an array
+         of minima.
+    x1, x2, x3 : array_like
+        The abscissae of a standard scalar minimization bracket. A bracket is
+        valid if ``x1 < x2 < x3`` and ``func(x1) > func(x2) <= func(x3)``.
+        Must be broadcastable with one another and `args`.
+    args : tuple, optional
+        Additional positional arguments to be passed to `func`.  Must be arrays
+        broadcastable with `x1`, `x2`, and `x3`. If the callable to be
+        differentiated requires arguments that are not broadcastable with `x`,
+        wrap that callable with `func` such that `func` accepts only `x` and
+        broadcastable arrays.
+    xatol, xrtol, fatol, frtol : float, optional
+        Absolute and relative tolerances on the minimizer and function value.
+        See Notes for details.
+    maxiter : int, optional
+        The maximum number of iterations of the algorithm to perform.
+    callback : callable, optional
+        An optional user-supplied function to be called before the first
+        iteration and after each iteration.
+        Called as ``callback(res)``, where ``res`` is a ``_RichResult``
+        similar to that returned by `_chandrupatla_minimize` (but containing
+        the current iterate's values of all variables). If `callback` raises a
+        ``StopIteration``, the algorithm will terminate immediately and
+        `_chandrupatla_minimize` will return a result.
+
+    Returns
+    -------
+    res : _RichResult
+        An instance of `scipy._lib._util._RichResult` with the following
+        attributes. (The descriptions are written as though the values will be
+        scalars; however, if `func` returns an array, the outputs will be
+        arrays of the same shape.)
+
+        success : bool
+            ``True`` when the algorithm terminated successfully (status ``0``).
+        status : int
+            An integer representing the exit status of the algorithm.
+            ``0`` : The algorithm converged to the specified tolerances.
+            ``-1`` : The algorithm encountered an invalid bracket.
+            ``-2`` : The maximum number of iterations was reached.
+            ``-3`` : A non-finite value was encountered.
+            ``-4`` : Iteration was terminated by `callback`.
+            ``1`` : The algorithm is proceeding normally (in `callback` only).
+        x : float
+            The minimizer of the function, if the algorithm terminated
+            successfully.
+        fun : float
+            The value of `func` evaluated at `x`.
+        nfev : int
+            The number of points at which `func` was evaluated.
+        nit : int
+            The number of iterations of the algorithm that were performed.
+        xl, xm, xr : float
+            The final three-point bracket.
+        fl, fm, fr : float
+            The function value at the bracket points.
+
+    Notes
+    -----
+    Implemented based on Chandrupatla's original paper [1]_.
+
+    If ``x1 < x2 < x3`` are the points of the bracket and ``f1 > f2 <= f3``
+    are the values of ``func`` at those points, then the algorithm is
+    considered to have converged when ``x3 - x1 <= abs(x2)*xrtol + xatol``
+    or ``(f1 - 2*f2 + f3)/2 <= abs(f2)*frtol + fatol``. Note that first of
+    these differs from the termination conditions described in [1]_. The
+    default values of `xrtol` is the square root of the precision of the
+    appropriate dtype, and ``xatol=fatol = frtol`` is the smallest normal
+    number of the appropriate dtype.
+
+    References
+    ----------
+    .. [1] Chandrupatla, Tirupathi R. (1998).
+        "An efficient quadratic fit-sectioning algorithm for minimization
+        without derivatives".
+        Computer Methods in Applied Mechanics and Engineering, 152 (1-2),
+        211-217. https://doi.org/10.1016/S0045-7825(97)00190-4
+
+    See Also
+    --------
+    golden, brent, bounded
+
+    Examples
+    --------
+    >>> from scipy.optimize._chandrupatla import _chandrupatla_minimize
+    >>> def f(x, args=1):
+    ...     return (x - args)**2
+    >>> res = _chandrupatla_minimize(f, -5, 0, 5)
+    >>> res.x
+    1.0
+    >>> c = [1, 1.5, 2]
+    >>> res = _chandrupatla_minimize(f, -5, 0, 5, args=(c,))
+    >>> res.x
+    array([1. , 1.5, 2. ])
+    """
+    res = _chandrupatla_iv(func, args, xatol, xrtol,
+                           fatol, frtol, maxiter, callback)
+    func, args, xatol, xrtol, fatol, frtol, maxiter, callback = res
+
+    # Initialization
+    xs = (x1, x2, x3)
+    temp = eim._initialize(func, xs, args)
+    func, xs, fs, args, shape, dtype = temp  # line split for PEP8
+    x1, x2, x3 = xs
+    f1, f2, f3 = fs
+    phi = dtype.type(0.5 + 0.5*5**0.5)  # golden ratio
+    status = np.full_like(x1, eim._EINPROGRESS, dtype=int)  # in progress
+    nit, nfev = 0, 3  # three function evaluations performed above
+    fatol = np.finfo(dtype).tiny if fatol is None else fatol
+    frtol = np.finfo(dtype).tiny if frtol is None else frtol
+    xatol = np.finfo(dtype).tiny if xatol is None else xatol
+    xrtol = np.sqrt(np.finfo(dtype).eps) if xrtol is None else xrtol
+
+    # Ensure that x1 < x2 < x3 initially.
+    xs, fs = np.vstack((x1, x2, x3)), np.vstack((f1, f2, f3))
+    i = np.argsort(xs, axis=0)
+    x1, x2, x3 = np.take_along_axis(xs, i, axis=0)
+    f1, f2, f3 = np.take_along_axis(fs, i, axis=0)
+    q0 = x3.copy()  # "At the start, q0 is set at x3..." ([1] after (7))
+
+    work = _RichResult(x1=x1, f1=f1, x2=x2, f2=f2, x3=x3, f3=f3, phi=phi,
+                       xatol=xatol, xrtol=xrtol, fatol=fatol, frtol=frtol,
+                       nit=nit, nfev=nfev, status=status, q0=q0, args=args)
+    res_work_pairs = [('status', 'status'),
+                      ('x', 'x2'), ('fun', 'f2'),
+                      ('nit', 'nit'), ('nfev', 'nfev'),
+                      ('xl', 'x1'), ('xm', 'x2'), ('xr', 'x3'),
+                      ('fl', 'f1'), ('fm', 'f2'), ('fr', 'f3')]
+
+    def pre_func_eval(work):
+        # `_check_termination` is called first -> `x3 - x2 > x2 - x1`
+        # But let's calculate a few terms that we'll reuse
+        x21 = work.x2 - work.x1
+        x32 = work.x3 - work.x2
+
+        # [1] Section 3. "The quadratic minimum point Q1 is calculated using
+        # the relations developed in the previous section." [1] Section 2 (5/6)
+        A = x21 * (work.f3 - work.f2)
+        B = x32 * (work.f1 - work.f2)
+        C = A / (A + B)
+        # q1 = C * (work.x1 + work.x2) / 2 + (1 - C) * (work.x2 + work.x3) / 2
+        q1 = 0.5 * (C*(work.x1 - work.x3) + work.x2 + work.x3)  # much faster
+        # this is an array, so multiplying by 0.5 does not change dtype
+
+        # "If Q1 and Q0 are sufficiently close... Q1 is accepted if it is
+        # sufficiently away from the inside point x2"
+        i = abs(q1 - work.q0) < 0.5 * abs(x21)  # [1] (7)
+        xi = q1[i]
+        # Later, after (9), "If the point Q1 is in a +/- xtol neighborhood of
+        # x2, the new point is chosen in the larger interval at a distance
+        # tol away from x2."
+        # See also QBASIC code after "Accept Ql adjust if close to X2".
+        j = abs(q1[i] - work.x2[i]) <= work.xtol[i]
+        xi[j] = work.x2[i][j] + np.sign(x32[i][j]) * work.xtol[i][j]
+
+        # "If condition (7) is not satisfied, golden sectioning of the larger
+        # interval is carried out to introduce the new point."
+        # (For simplicity, we go ahead and calculate it for all points, but we
+        # change the elements for which the condition was satisfied.)
+        x = work.x2 + (2 - work.phi) * x32
+        x[i] = xi
+
+        # "We define Q0 as the value of Q1 at the previous iteration."
+        work.q0 = q1
+        return x
+
+    def post_func_eval(x, f, work):
+        # Standard logic for updating a three-point bracket based on a new
+        # point. In QBASIC code, see "IF SGN(X-X2) = SGN(X3-X2) THEN...".
+        # There is an awful lot of data copying going on here; this would
+        # probably benefit from code optimization or implementation in Pythran.
+        i = np.sign(x - work.x2) == np.sign(work.x3 - work.x2)
+        xi, x1i, x2i, x3i = x[i], work.x1[i], work.x2[i], work.x3[i],
+        fi, f1i, f2i, f3i = f[i], work.f1[i], work.f2[i], work.f3[i]
+        j = fi > f2i
+        x3i[j], f3i[j] = xi[j], fi[j]
+        j = ~j
+        x1i[j], f1i[j], x2i[j], f2i[j] = x2i[j], f2i[j], xi[j], fi[j]
+
+        ni = ~i
+        xni, x1ni, x2ni, x3ni = x[ni], work.x1[ni], work.x2[ni], work.x3[ni],
+        fni, f1ni, f2ni, f3ni = f[ni], work.f1[ni], work.f2[ni], work.f3[ni]
+        j = fni > f2ni
+        x1ni[j], f1ni[j] = xni[j], fni[j]
+        j = ~j
+        x3ni[j], f3ni[j], x2ni[j], f2ni[j] = x2ni[j], f2ni[j], xni[j], fni[j]
+
+        work.x1[i], work.x2[i], work.x3[i] = x1i, x2i, x3i
+        work.f1[i], work.f2[i], work.f3[i] = f1i, f2i, f3i
+        work.x1[ni], work.x2[ni], work.x3[ni] = x1ni, x2ni, x3ni,
+        work.f1[ni], work.f2[ni], work.f3[ni] = f1ni, f2ni, f3ni
+
+    def check_termination(work):
+        # Check for all terminal conditions and record statuses.
+        stop = np.zeros_like(work.x1, dtype=bool)  # termination condition met
+
+        # Bracket is invalid; stop and don't return minimizer/minimum
+        i = ((work.f2 > work.f1) | (work.f2 > work.f3))
+        work.x2[i], work.f2[i] = np.nan, np.nan
+        stop[i], work.status[i] = True, eim._ESIGNERR
+
+        # Non-finite values; stop and don't return minimizer/minimum
+        finite = np.isfinite(work.x1+work.x2+work.x3+work.f1+work.f2+work.f3)
+        i = ~(finite | stop)
+        work.x2[i], work.f2[i] = np.nan, np.nan
+        stop[i], work.status[i] = True, eim._EVALUEERR
+
+        # [1] Section 3 "Points 1 and 3 are interchanged if necessary to make
+        # the (x2, x3) the larger interval."
+        # Note: I had used np.choose; this is much faster. This would be a good
+        # place to save e.g. `work.x3 - work.x2` for reuse, but I tried and
+        # didn't notice a speed boost, so let's keep it simple.
+        i = abs(work.x3 - work.x2) < abs(work.x2 - work.x1)
+        temp = work.x1[i]
+        work.x1[i] = work.x3[i]
+        work.x3[i] = temp
+        temp = work.f1[i]
+        work.f1[i] = work.f3[i]
+        work.f3[i] = temp
+
+        # [1] Section 3 (bottom of page 212)
+        # "We set a tolerance value xtol..."
+        work.xtol = abs(work.x2) * work.xrtol + work.xatol  # [1] (8)
+        # "The convergence based on interval is achieved when..."
+        # Note: Equality allowed in case of `xtol=0`
+        i = abs(work.x3 - work.x2) <= 2 * work.xtol  # [1] (9)
+
+        # "We define ftol using..."
+        ftol = abs(work.f2) * work.frtol + work.fatol  # [1] (10)
+        # "The convergence based on function values is achieved when..."
+        # Note 1: modify in place to incorporate tolerance on function value.
+        # Note 2: factor of 2 is not in the text; see QBASIC start of DO loop
+        i |= (work.f1 - 2 * work.f2 + work.f3) <= 2*ftol  # [1] (11)
+        i &= ~stop
+        stop[i], work.status[i] = True, eim._ECONVERGED
+
+        return stop
+
+    def post_termination_check(work):
+        pass
+
+    def customize_result(res, shape):
+        xl, xr, fl, fr = res['xl'], res['xr'], res['fl'], res['fr']
+        i = res['xl'] < res['xr']
+        res['xl'] = np.choose(i, (xr, xl))
+        res['xr'] = np.choose(i, (xl, xr))
+        res['fl'] = np.choose(i, (fr, fl))
+        res['fr'] = np.choose(i, (fl, fr))
+        return shape
+
+    return eim._loop(work, callback, shape, maxiter, func, args, dtype,
+                     pre_func_eval, post_func_eval, check_termination,
+                     post_termination_check, customize_result, res_work_pairs)

env-llmeval/lib/python3.10/site-packages/scipy/optimize/_cobyla_py.py

@@ -0,0 +1,316 @@
+"""
+Interface to Constrained Optimization By Linear Approximation
+
+Functions
+---------
+.. autosummary::
+   :toctree: generated/
+
+    fmin_cobyla
+
+"""
+
+import functools
+from threading import RLock
+
+import numpy as np
+from scipy.optimize import _cobyla as cobyla
+from ._optimize import (OptimizeResult, _check_unknown_options,
+    _prepare_scalar_function)
+try:
+    from itertools import izip
+except ImportError:
+    izip = zip
+
+__all__ = ['fmin_cobyla']
+
+# Workaround as _cobyla.minimize is not threadsafe
+# due to an unknown f2py bug and can segfault,
+# see gh-9658.
+_module_lock = RLock()
+def synchronized(func):
+    @functools.wraps(func)
+    def wrapper(*args, **kwargs):
+        with _module_lock:
+            return func(*args, **kwargs)
+    return wrapper
+
+@synchronized
+def fmin_cobyla(func, x0, cons, args=(), consargs=None, rhobeg=1.0,
+                rhoend=1e-4, maxfun=1000, disp=None, catol=2e-4,
+                *, callback=None):
+    """
+    Minimize a function using the Constrained Optimization By Linear
+    Approximation (COBYLA) method. This method wraps a FORTRAN
+    implementation of the algorithm.
+
+    Parameters
+    ----------
+    func : callable
+        Function to minimize. In the form func(x, \\*args).
+    x0 : ndarray
+        Initial guess.
+    cons : sequence
+        Constraint functions; must all be ``>=0`` (a single function
+        if only 1 constraint). Each function takes the parameters `x`
+        as its first argument, and it can return either a single number or
+        an array or list of numbers.
+    args : tuple, optional
+        Extra arguments to pass to function.
+    consargs : tuple, optional
+        Extra arguments to pass to constraint functions (default of None means
+        use same extra arguments as those passed to func).
+        Use ``()`` for no extra arguments.
+    rhobeg : float, optional
+        Reasonable initial changes to the variables.
+    rhoend : float, optional
+        Final accuracy in the optimization (not precisely guaranteed). This
+        is a lower bound on the size of the trust region.
+    disp : {0, 1, 2, 3}, optional
+        Controls the frequency of output; 0 implies no output.
+    maxfun : int, optional
+        Maximum number of function evaluations.
+    catol : float, optional
+        Absolute tolerance for constraint violations.
+    callback : callable, optional
+        Called after each iteration, as ``callback(x)``, where ``x`` is the
+        current parameter vector.
+
+    Returns
+    -------
+    x : ndarray
+        The argument that minimises `f`.
+
+    See also
+    --------
+    minimize: Interface to minimization algorithms for multivariate
+        functions. See the 'COBYLA' `method` in particular.
+
+    Notes
+    -----
+    This algorithm is based on linear approximations to the objective
+    function and each constraint. We briefly describe the algorithm.
+
+    Suppose the function is being minimized over k variables. At the
+    jth iteration the algorithm has k+1 points v_1, ..., v_(k+1),
+    an approximate solution x_j, and a radius RHO_j.
+    (i.e., linear plus a constant) approximations to the objective
+    function and constraint functions such that their function values
+    agree with the linear approximation on the k+1 points v_1,.., v_(k+1).
+    This gives a linear program to solve (where the linear approximations
+    of the constraint functions are constrained to be non-negative).
+
+    However, the linear approximations are likely only good
+    approximations near the current simplex, so the linear program is
+    given the further requirement that the solution, which
+    will become x_(j+1), must be within RHO_j from x_j. RHO_j only
+    decreases, never increases. The initial RHO_j is rhobeg and the
+    final RHO_j is rhoend. In this way COBYLA's iterations behave
+    like a trust region algorithm.
+
+    Additionally, the linear program may be inconsistent, or the
+    approximation may give poor improvement. For details about
+    how these issues are resolved, as well as how the points v_i are
+    updated, refer to the source code or the references below.
+
+
+    References
+    ----------
+    Powell M.J.D. (1994), "A direct search optimization method that models
+    the objective and constraint functions by linear interpolation.", in
+    Advances in Optimization and Numerical Analysis, eds. S. Gomez and
+    J-P Hennart, Kluwer Academic (Dordrecht), pp. 51-67
+
+    Powell M.J.D. (1998), "Direct search algorithms for optimization
+    calculations", Acta Numerica 7, 287-336
+
+    Powell M.J.D. (2007), "A view of algorithms for optimization without
+    derivatives", Cambridge University Technical Report DAMTP 2007/NA03
+
+
+    Examples
+    --------
+    Minimize the objective function f(x,y) = x*y subject
+    to the constraints x**2 + y**2 < 1 and y > 0::
+
+        >>> def objective(x):
+        ...     return x[0]*x[1]
+        ...
+        >>> def constr1(x):
+        ...     return 1 - (x[0]**2 + x[1]**2)
+        ...
+        >>> def constr2(x):
+        ...     return x[1]
+        ...
+        >>> from scipy.optimize import fmin_cobyla
+        >>> fmin_cobyla(objective, [0.0, 0.1], [constr1, constr2], rhoend=1e-7)
+        array([-0.70710685,  0.70710671])
+
+    The exact solution is (-sqrt(2)/2, sqrt(2)/2).
+
+
+
+    """
+    err = "cons must be a sequence of callable functions or a single"\
+          " callable function."
+    try:
+        len(cons)
+    except TypeError as e:
+        if callable(cons):
+            cons = [cons]
+        else:
+            raise TypeError(err) from e
+    else:
+        for thisfunc in cons:
+            if not callable(thisfunc):
+                raise TypeError(err)
+
+    if consargs is None:
+        consargs = args
+
+    # build constraints
+    con = tuple({'type': 'ineq', 'fun': c, 'args': consargs} for c in cons)
+
+    # options
+    opts = {'rhobeg': rhobeg,
+            'tol': rhoend,
+            'disp': disp,
+            'maxiter': maxfun,
+            'catol': catol,
+            'callback': callback}
+
+    sol = _minimize_cobyla(func, x0, args, constraints=con,
+                           **opts)
+    if disp and not sol['success']:
+        print(f"COBYLA failed to find a solution: {sol.message}")
+    return sol['x']
+
+
+@synchronized
+def _minimize_cobyla(fun, x0, args=(), constraints=(),
+                     rhobeg=1.0, tol=1e-4, maxiter=1000,
+                     disp=False, catol=2e-4, callback=None, bounds=None,
+                     **unknown_options):
+    """
+    Minimize a scalar function of one or more variables using the
+    Constrained Optimization BY Linear Approximation (COBYLA) algorithm.
+
+    Options
+    -------
+    rhobeg : float
+        Reasonable initial changes to the variables.
+    tol : float
+        Final accuracy in the optimization (not precisely guaranteed).
+        This is a lower bound on the size of the trust region.
+    disp : bool
+        Set to True to print convergence messages. If False,
+        `verbosity` is ignored as set to 0.
+    maxiter : int
+        Maximum number of function evaluations.
+    catol : float
+        Tolerance (absolute) for constraint violations
+
+    """
+    _check_unknown_options(unknown_options)
+    maxfun = maxiter
+    rhoend = tol
+    iprint = int(bool(disp))
+
+    # check constraints
+    if isinstance(constraints, dict):
+        constraints = (constraints, )
+
+    if bounds:
+        i_lb = np.isfinite(bounds.lb)
+        if np.any(i_lb):
+            def lb_constraint(x, *args, **kwargs):
+                return x[i_lb] - bounds.lb[i_lb]
+
+            constraints.append({'type': 'ineq', 'fun': lb_constraint})
+
+        i_ub = np.isfinite(bounds.ub)
+        if np.any(i_ub):
+            def ub_constraint(x):
+                return bounds.ub[i_ub] - x[i_ub]
+
+            constraints.append({'type': 'ineq', 'fun': ub_constraint})
+
+    for ic, con in enumerate(constraints):
+        # check type
+        try:
+            ctype = con['type'].lower()
+        except KeyError as e:
+            raise KeyError('Constraint %d has no type defined.' % ic) from e
+        except TypeError as e:
+            raise TypeError('Constraints must be defined using a '
+                            'dictionary.') from e
+        except AttributeError as e:
+            raise TypeError("Constraint's type must be a string.") from e
+        else:
+            if ctype != 'ineq':
+                raise ValueError("Constraints of type '%s' not handled by "
+                                 "COBYLA." % con['type'])
+
+        # check function
+        if 'fun' not in con:
+            raise KeyError('Constraint %d has no function defined.' % ic)
+
+        # check extra arguments
+        if 'args' not in con:
+            con['args'] = ()
+
+    # m is the total number of constraint values
+    # it takes into account that some constraints may be vector-valued
+    cons_lengths = []
+    for c in constraints:
+        f = c['fun'](x0, *c['args'])
+        try:
+            cons_length = len(f)
+        except TypeError:
+            cons_length = 1
+        cons_lengths.append(cons_length)
+    m = sum(cons_lengths)
+
+    # create the ScalarFunction, cobyla doesn't require derivative function
+    def _jac(x, *args):
+        return None
+
+    sf = _prepare_scalar_function(fun, x0, args=args, jac=_jac)
+
+    def calcfc(x, con):
+        f = sf.fun(x)
+        i = 0
+        for size, c in izip(cons_lengths, constraints):
+            con[i: i + size] = c['fun'](x, *c['args'])
+            i += size
+        return f
+
+    def wrapped_callback(x):
+        if callback is not None:
+            callback(np.copy(x))
+
+    info = np.zeros(4, np.float64)
+    xopt, info = cobyla.minimize(calcfc, m=m, x=np.copy(x0), rhobeg=rhobeg,
+                                  rhoend=rhoend, iprint=iprint, maxfun=maxfun,
+                                  dinfo=info, callback=wrapped_callback)
+
+    if info[3] > catol:
+        # Check constraint violation
+        info[0] = 4
+
+    return OptimizeResult(x=xopt,
+                          status=int(info[0]),
+                          success=info[0] == 1,
+                          message={1: 'Optimization terminated successfully.',
+                                   2: 'Maximum number of function evaluations '
+                                      'has been exceeded.',
+                                   3: 'Rounding errors are becoming damaging '
+                                      'in COBYLA subroutine.',
+                                   4: 'Did not converge to a solution '
+                                      'satisfying the constraints. See '
+                                      '`maxcv` for magnitude of violation.',
+                                   5: 'NaN result encountered.'
+                                   }.get(info[0], 'Unknown exit status.'),
+                          nfev=int(info[1]),
+                          fun=info[2],
+                          maxcv=info[3])

env-llmeval/lib/python3.10/site-packages/scipy/optimize/_constraints.py

@@ -0,0 +1,590 @@
+"""Constraints definition for minimize."""
+import numpy as np
+from ._hessian_update_strategy import BFGS
+from ._differentiable_functions import (
+    VectorFunction, LinearVectorFunction, IdentityVectorFunction)
+from ._optimize import OptimizeWarning
+from warnings import warn, catch_warnings, simplefilter, filterwarnings
+from scipy.sparse import issparse
+
+
+def _arr_to_scalar(x):
+    # If x is a numpy array, return x.item().  This will
+    # fail if the array has more than one element.
+    return x.item() if isinstance(x, np.ndarray) else x
+
+
+class NonlinearConstraint:
+    """Nonlinear constraint on the variables.
+
+    The constraint has the general inequality form::
+
+        lb <= fun(x) <= ub
+
+    Here the vector of independent variables x is passed as ndarray of shape
+    (n,) and ``fun`` returns a vector with m components.
+
+    It is possible to use equal bounds to represent an equality constraint or
+    infinite bounds to represent a one-sided constraint.
+
+    Parameters
+    ----------
+    fun : callable
+        The function defining the constraint.
+        The signature is ``fun(x) -> array_like, shape (m,)``.
+    lb, ub : array_like
+        Lower and upper bounds on the constraint. Each array must have the
+        shape (m,) or be a scalar, in the latter case a bound will be the same
+        for all components of the constraint. Use ``np.inf`` with an
+        appropriate sign to specify a one-sided constraint.
+        Set components of `lb` and `ub` equal to represent an equality
+        constraint. Note that you can mix constraints of different types:
+        interval, one-sided or equality, by setting different components of
+        `lb` and `ub` as  necessary.
+    jac : {callable,  '2-point', '3-point', 'cs'}, optional
+        Method of computing the Jacobian matrix (an m-by-n matrix,
+        where element (i, j) is the partial derivative of f[i] with
+        respect to x[j]).  The keywords {'2-point', '3-point',
+        'cs'} select a finite difference scheme for the numerical estimation.
+        A callable must have the following signature:
+        ``jac(x) -> {ndarray, sparse matrix}, shape (m, n)``.
+        Default is '2-point'.
+    hess : {callable, '2-point', '3-point', 'cs', HessianUpdateStrategy, None}, optional
+        Method for computing the Hessian matrix. The keywords
+        {'2-point', '3-point', 'cs'} select a finite difference scheme for
+        numerical  estimation.  Alternatively, objects implementing
+        `HessianUpdateStrategy` interface can be used to approximate the
+        Hessian. Currently available implementations are:
+
+            - `BFGS` (default option)
+            - `SR1`
+
+        A callable must return the Hessian matrix of ``dot(fun, v)`` and
+        must have the following signature:
+        ``hess(x, v) -> {LinearOperator, sparse matrix, array_like}, shape (n, n)``.
+        Here ``v`` is ndarray with shape (m,) containing Lagrange multipliers.
+    keep_feasible : array_like of bool, optional
+        Whether to keep the constraint components feasible throughout
+        iterations. A single value set this property for all components.
+        Default is False. Has no effect for equality constraints.
+    finite_diff_rel_step: None or array_like, optional
+        Relative step size for the finite difference approximation. Default is
+        None, which will select a reasonable value automatically depending
+        on a finite difference scheme.
+    finite_diff_jac_sparsity: {None, array_like, sparse matrix}, optional
+        Defines the sparsity structure of the Jacobian matrix for finite
+        difference estimation, its shape must be (m, n). If the Jacobian has
+        only few non-zero elements in *each* row, providing the sparsity
+        structure will greatly speed up the computations. A zero entry means
+        that a corresponding element in the Jacobian is identically zero.
+        If provided, forces the use of 'lsmr' trust-region solver.
+        If None (default) then dense differencing will be used.
+
+    Notes
+    -----
+    Finite difference schemes {'2-point', '3-point', 'cs'} may be used for
+    approximating either the Jacobian or the Hessian. We, however, do not allow
+    its use for approximating both simultaneously. Hence whenever the Jacobian
+    is estimated via finite-differences, we require the Hessian to be estimated
+    using one of the quasi-Newton strategies.
+
+    The scheme 'cs' is potentially the most accurate, but requires the function
+    to correctly handles complex inputs and be analytically continuable to the
+    complex plane. The scheme '3-point' is more accurate than '2-point' but
+    requires twice as many operations.
+
+    Examples
+    --------
+    Constrain ``x[0] < sin(x[1]) + 1.9``
+
+    >>> from scipy.optimize import NonlinearConstraint
+    >>> import numpy as np
+    >>> con = lambda x: x[0] - np.sin(x[1])
+    >>> nlc = NonlinearConstraint(con, -np.inf, 1.9)
+
+    """
+    def __init__(self, fun, lb, ub, jac='2-point', hess=BFGS(),
+                 keep_feasible=False, finite_diff_rel_step=None,
+                 finite_diff_jac_sparsity=None):
+        self.fun = fun
+        self.lb = lb
+        self.ub = ub
+        self.finite_diff_rel_step = finite_diff_rel_step
+        self.finite_diff_jac_sparsity = finite_diff_jac_sparsity
+        self.jac = jac
+        self.hess = hess
+        self.keep_feasible = keep_feasible
+
+
+class LinearConstraint:
+    """Linear constraint on the variables.
+
+    The constraint has the general inequality form::
+
+        lb <= A.dot(x) <= ub
+
+    Here the vector of independent variables x is passed as ndarray of shape
+    (n,) and the matrix A has shape (m, n).
+
+    It is possible to use equal bounds to represent an equality constraint or
+    infinite bounds to represent a one-sided constraint.
+
+    Parameters
+    ----------
+    A : {array_like, sparse matrix}, shape (m, n)
+        Matrix defining the constraint.
+    lb, ub : dense array_like, optional
+        Lower and upper limits on the constraint. Each array must have the
+        shape (m,) or be a scalar, in the latter case a bound will be the same
+        for all components of the constraint. Use ``np.inf`` with an
+        appropriate sign to specify a one-sided constraint.
+        Set components of `lb` and `ub` equal to represent an equality
+        constraint. Note that you can mix constraints of different types:
+        interval, one-sided or equality, by setting different components of
+        `lb` and `ub` as  necessary. Defaults to ``lb = -np.inf``
+        and ``ub = np.inf`` (no limits).
+    keep_feasible : dense array_like of bool, optional
+        Whether to keep the constraint components feasible throughout
+        iterations. A single value set this property for all components.
+        Default is False. Has no effect for equality constraints.
+    """
+    def _input_validation(self):
+        if self.A.ndim != 2:
+            message = "`A` must have exactly two dimensions."
+            raise ValueError(message)
+
+        try:
+            shape = self.A.shape[0:1]
+            self.lb = np.broadcast_to(self.lb, shape)
+            self.ub = np.broadcast_to(self.ub, shape)
+            self.keep_feasible = np.broadcast_to(self.keep_feasible, shape)
+        except ValueError:
+            message = ("`lb`, `ub`, and `keep_feasible` must be broadcastable "
+                       "to shape `A.shape[0:1]`")
+            raise ValueError(message)
+
+    def __init__(self, A, lb=-np.inf, ub=np.inf, keep_feasible=False):
+        if not issparse(A):
+            # In some cases, if the constraint is not valid, this emits a
+            # VisibleDeprecationWarning about ragged nested sequences
+            # before eventually causing an error. `scipy.optimize.milp` would
+            # prefer that this just error out immediately so it can handle it
+            # rather than concerning the user.
+            with catch_warnings():
+                simplefilter("error")
+                self.A = np.atleast_2d(A).astype(np.float64)
+        else:
+            self.A = A
+        if issparse(lb) or issparse(ub):
+            raise ValueError("Constraint limits must be dense arrays.")
+        self.lb = np.atleast_1d(lb).astype(np.float64)
+        self.ub = np.atleast_1d(ub).astype(np.float64)
+
+        if issparse(keep_feasible):
+            raise ValueError("`keep_feasible` must be a dense array.")
+        self.keep_feasible = np.atleast_1d(keep_feasible).astype(bool)
+        self._input_validation()
+
+    def residual(self, x):
+        """
+        Calculate the residual between the constraint function and the limits
+
+        For a linear constraint of the form::
+
+            lb <= A@x <= ub
+
+        the lower and upper residuals between ``A@x`` and the limits are values
+        ``sl`` and ``sb`` such that::
+
+            lb + sl == A@x == ub - sb
+
+        When all elements of ``sl`` and ``sb`` are positive, all elements of
+        the constraint are satisfied; a negative element in ``sl`` or ``sb``
+        indicates that the corresponding element of the constraint is not
+        satisfied.
+
+        Parameters
+        ----------
+        x: array_like
+            Vector of independent variables
+
+        Returns
+        -------
+        sl, sb : array-like
+            The lower and upper residuals
+        """
+        return self.A@x - self.lb, self.ub - self.A@x
+
+
+class Bounds:
+    """Bounds constraint on the variables.
+
+    The constraint has the general inequality form::
+
+        lb <= x <= ub
+
+    It is possible to use equal bounds to represent an equality constraint or
+    infinite bounds to represent a one-sided constraint.
+
+    Parameters
+    ----------
+    lb, ub : dense array_like, optional
+        Lower and upper bounds on independent variables. `lb`, `ub`, and
+        `keep_feasible` must be the same shape or broadcastable.
+        Set components of `lb` and `ub` equal
+        to fix a variable. Use ``np.inf`` with an appropriate sign to disable
+        bounds on all or some variables. Note that you can mix constraints of
+        different types: interval, one-sided or equality, by setting different
+        components of `lb` and `ub` as necessary. Defaults to ``lb = -np.inf``
+        and ``ub = np.inf`` (no bounds).
+    keep_feasible : dense array_like of bool, optional
+        Whether to keep the constraint components feasible throughout
+        iterations. Must be broadcastable with `lb` and `ub`.
+        Default is False. Has no effect for equality constraints.
+    """
+    def _input_validation(self):
+        try:
+            res = np.broadcast_arrays(self.lb, self.ub, self.keep_feasible)
+            self.lb, self.ub, self.keep_feasible = res
+        except ValueError:
+            message = "`lb`, `ub`, and `keep_feasible` must be broadcastable."
+            raise ValueError(message)
+
+    def __init__(self, lb=-np.inf, ub=np.inf, keep_feasible=False):
+        if issparse(lb) or issparse(ub):
+            raise ValueError("Lower and upper bounds must be dense arrays.")
+        self.lb = np.atleast_1d(lb)
+        self.ub = np.atleast_1d(ub)
+
+        if issparse(keep_feasible):
+            raise ValueError("`keep_feasible` must be a dense array.")
+        self.keep_feasible = np.atleast_1d(keep_feasible).astype(bool)
+        self._input_validation()
+
+    def __repr__(self):
+        start = f"{type(self).__name__}({self.lb!r}, {self.ub!r}"
+        if np.any(self.keep_feasible):
+            end = f", keep_feasible={self.keep_feasible!r})"
+        else:
+            end = ")"
+        return start + end
+
+    def residual(self, x):
+        """Calculate the residual (slack) between the input and the bounds
+
+        For a bound constraint of the form::
+
+            lb <= x <= ub
+
+        the lower and upper residuals between `x` and the bounds are values
+        ``sl`` and ``sb`` such that::
+
+            lb + sl == x == ub - sb
+
+        When all elements of ``sl`` and ``sb`` are positive, all elements of
+        ``x`` lie within the bounds; a negative element in ``sl`` or ``sb``
+        indicates that the corresponding element of ``x`` is out of bounds.
+
+        Parameters
+        ----------
+        x: array_like
+            Vector of independent variables
+
+        Returns
+        -------
+        sl, sb : array-like
+            The lower and upper residuals
+        """
+        return x - self.lb, self.ub - x
+
+
+class PreparedConstraint:
+    """Constraint prepared from a user defined constraint.
+
+    On creation it will check whether a constraint definition is valid and
+    the initial point is feasible. If created successfully, it will contain
+    the attributes listed below.
+
+    Parameters
+    ----------
+    constraint : {NonlinearConstraint, LinearConstraint`, Bounds}
+        Constraint to check and prepare.
+    x0 : array_like
+        Initial vector of independent variables.
+    sparse_jacobian : bool or None, optional
+        If bool, then the Jacobian of the constraint will be converted
+        to the corresponded format if necessary. If None (default), such
+        conversion is not made.
+    finite_diff_bounds : 2-tuple, optional
+        Lower and upper bounds on the independent variables for the finite
+        difference approximation, if applicable. Defaults to no bounds.
+
+    Attributes
+    ----------
+    fun : {VectorFunction, LinearVectorFunction, IdentityVectorFunction}
+        Function defining the constraint wrapped by one of the convenience
+        classes.
+    bounds : 2-tuple
+        Contains lower and upper bounds for the constraints --- lb and ub.
+        These are converted to ndarray and have a size equal to the number of
+        the constraints.
+    keep_feasible : ndarray
+         Array indicating which components must be kept feasible with a size
+         equal to the number of the constraints.
+    """
+    def __init__(self, constraint, x0, sparse_jacobian=None,
+                 finite_diff_bounds=(-np.inf, np.inf)):
+        if isinstance(constraint, NonlinearConstraint):
+            fun = VectorFunction(constraint.fun, x0,
+                                 constraint.jac, constraint.hess,
+                                 constraint.finite_diff_rel_step,
+                                 constraint.finite_diff_jac_sparsity,
+                                 finite_diff_bounds, sparse_jacobian)
+        elif isinstance(constraint, LinearConstraint):
+            fun = LinearVectorFunction(constraint.A, x0, sparse_jacobian)
+        elif isinstance(constraint, Bounds):
+            fun = IdentityVectorFunction(x0, sparse_jacobian)
+        else:
+            raise ValueError("`constraint` of an unknown type is passed.")
+
+        m = fun.m
+
+        lb = np.asarray(constraint.lb, dtype=float)
+        ub = np.asarray(constraint.ub, dtype=float)
+        keep_feasible = np.asarray(constraint.keep_feasible, dtype=bool)
+
+        lb = np.broadcast_to(lb, m)
+        ub = np.broadcast_to(ub, m)
+        keep_feasible = np.broadcast_to(keep_feasible, m)
+
+        if keep_feasible.shape != (m,):
+            raise ValueError("`keep_feasible` has a wrong shape.")
+
+        mask = keep_feasible & (lb != ub)
+        f0 = fun.f
+        if np.any(f0[mask] < lb[mask]) or np.any(f0[mask] > ub[mask]):
+            raise ValueError("`x0` is infeasible with respect to some "
+                             "inequality constraint with `keep_feasible` "
+                             "set to True.")
+
+        self.fun = fun
+        self.bounds = (lb, ub)
+        self.keep_feasible = keep_feasible
+
+    def violation(self, x):
+        """How much the constraint is exceeded by.
+
+        Parameters
+        ----------
+        x : array-like
+            Vector of independent variables
+
+        Returns
+        -------
+        excess : array-like
+            How much the constraint is exceeded by, for each of the
+            constraints specified by `PreparedConstraint.fun`.
+        """
+        with catch_warnings():
+            # Ignore the following warning, it's not important when
+            # figuring out total violation
+            # UserWarning: delta_grad == 0.0. Check if the approximated
+            # function is linear
+            filterwarnings("ignore", "delta_grad", UserWarning)
+            ev = self.fun.fun(np.asarray(x))
+
+        excess_lb = np.maximum(self.bounds[0] - ev, 0)
+        excess_ub = np.maximum(ev - self.bounds[1], 0)
+
+        return excess_lb + excess_ub
+
+
+def new_bounds_to_old(lb, ub, n):
+    """Convert the new bounds representation to the old one.
+
+    The new representation is a tuple (lb, ub) and the old one is a list
+    containing n tuples, ith containing lower and upper bound on a ith
+    variable.
+    If any of the entries in lb/ub are -np.inf/np.inf they are replaced by
+    None.
+    """
+    lb = np.broadcast_to(lb, n)
+    ub = np.broadcast_to(ub, n)
+
+    lb = [float(x) if x > -np.inf else None for x in lb]
+    ub = [float(x) if x < np.inf else None for x in ub]
+
+    return list(zip(lb, ub))
+
+
+def old_bound_to_new(bounds):
+    """Convert the old bounds representation to the new one.
+
+    The new representation is a tuple (lb, ub) and the old one is a list
+    containing n tuples, ith containing lower and upper bound on a ith
+    variable.
+    If any of the entries in lb/ub are None they are replaced by
+    -np.inf/np.inf.
+    """
+    lb, ub = zip(*bounds)
+
+    # Convert occurrences of None to -inf or inf, and replace occurrences of
+    # any numpy array x with x.item(). Then wrap the results in numpy arrays.
+    lb = np.array([float(_arr_to_scalar(x)) if x is not None else -np.inf
+                   for x in lb])
+    ub = np.array([float(_arr_to_scalar(x)) if x is not None else np.inf
+                   for x in ub])
+
+    return lb, ub
+
+
+def strict_bounds(lb, ub, keep_feasible, n_vars):
+    """Remove bounds which are not asked to be kept feasible."""
+    strict_lb = np.resize(lb, n_vars).astype(float)
+    strict_ub = np.resize(ub, n_vars).astype(float)
+    keep_feasible = np.resize(keep_feasible, n_vars)
+    strict_lb[~keep_feasible] = -np.inf
+    strict_ub[~keep_feasible] = np.inf
+    return strict_lb, strict_ub
+
+
+def new_constraint_to_old(con, x0):
+    """
+    Converts new-style constraint objects to old-style constraint dictionaries.
+    """
+    if isinstance(con, NonlinearConstraint):
+        if (con.finite_diff_jac_sparsity is not None or
+                con.finite_diff_rel_step is not None or
+                not isinstance(con.hess, BFGS) or  # misses user specified BFGS
+                con.keep_feasible):
+            warn("Constraint options `finite_diff_jac_sparsity`, "
+                 "`finite_diff_rel_step`, `keep_feasible`, and `hess`"
+                 "are ignored by this method.",
+                 OptimizeWarning, stacklevel=3)
+
+        fun = con.fun
+        if callable(con.jac):
+            jac = con.jac
+        else:
+            jac = None
+
+    else:  # LinearConstraint
+        if np.any(con.keep_feasible):
+            warn("Constraint option `keep_feasible` is ignored by this method.",
+                 OptimizeWarning, stacklevel=3)
+
+        A = con.A
+        if issparse(A):
+            A = A.toarray()
+        def fun(x):
+            return np.dot(A, x)
+        def jac(x):
+            return A
+
+    # FIXME: when bugs in VectorFunction/LinearVectorFunction are worked out,
+    # use pcon.fun.fun and pcon.fun.jac. Until then, get fun/jac above.
+    pcon = PreparedConstraint(con, x0)
+    lb, ub = pcon.bounds
+
+    i_eq = lb == ub
+    i_bound_below = np.logical_xor(lb != -np.inf, i_eq)
+    i_bound_above = np.logical_xor(ub != np.inf, i_eq)
+    i_unbounded = np.logical_and(lb == -np.inf, ub == np.inf)
+
+    if np.any(i_unbounded):
+        warn("At least one constraint is unbounded above and below. Such "
+             "constraints are ignored.",
+             OptimizeWarning, stacklevel=3)
+
+    ceq = []
+    if np.any(i_eq):
+        def f_eq(x):
+            y = np.array(fun(x)).flatten()
+            return y[i_eq] - lb[i_eq]
+        ceq = [{"type": "eq", "fun": f_eq}]
+
+        if jac is not None:
+            def j_eq(x):
+                dy = jac(x)
+                if issparse(dy):
+                    dy = dy.toarray()
+                dy = np.atleast_2d(dy)
+                return dy[i_eq, :]
+            ceq[0]["jac"] = j_eq
+
+    cineq = []
+    n_bound_below = np.sum(i_bound_below)
+    n_bound_above = np.sum(i_bound_above)
+    if n_bound_below + n_bound_above:
+        def f_ineq(x):
+            y = np.zeros(n_bound_below + n_bound_above)
+            y_all = np.array(fun(x)).flatten()
+            y[:n_bound_below] = y_all[i_bound_below] - lb[i_bound_below]
+            y[n_bound_below:] = -(y_all[i_bound_above] - ub[i_bound_above])
+            return y
+        cineq = [{"type": "ineq", "fun": f_ineq}]
+
+        if jac is not None:
+            def j_ineq(x):
+                dy = np.zeros((n_bound_below + n_bound_above, len(x0)))
+                dy_all = jac(x)
+                if issparse(dy_all):
+                    dy_all = dy_all.toarray()
+                dy_all = np.atleast_2d(dy_all)
+                dy[:n_bound_below, :] = dy_all[i_bound_below]
+                dy[n_bound_below:, :] = -dy_all[i_bound_above]
+                return dy
+            cineq[0]["jac"] = j_ineq
+
+    old_constraints = ceq + cineq
+
+    if len(old_constraints) > 1:
+        warn("Equality and inequality constraints are specified in the same "
+             "element of the constraint list. For efficient use with this "
+             "method, equality and inequality constraints should be specified "
+             "in separate elements of the constraint list. ",
+             OptimizeWarning, stacklevel=3)
+    return old_constraints
+
+
+def old_constraint_to_new(ic, con):
+    """
+    Converts old-style constraint dictionaries to new-style constraint objects.
+    """
+    # check type
+    try:
+        ctype = con['type'].lower()
+    except KeyError as e:
+        raise KeyError('Constraint %d has no type defined.' % ic) from e
+    except TypeError as e:
+        raise TypeError(
+            'Constraints must be a sequence of dictionaries.'
+        ) from e
+    except AttributeError as e:
+        raise TypeError("Constraint's type must be a string.") from e
+    else:
+        if ctype not in ['eq', 'ineq']:
+            raise ValueError("Unknown constraint type '%s'." % con['type'])
+    if 'fun' not in con:
+        raise ValueError('Constraint %d has no function defined.' % ic)
+
+    lb = 0
+    if ctype == 'eq':
+        ub = 0
+    else:
+        ub = np.inf
+
+    jac = '2-point'
+    if 'args' in con:
+        args = con['args']
+        def fun(x):
+            return con["fun"](x, *args)
+        if 'jac' in con:
+            def jac(x):
+                return con["jac"](x, *args)
+    else:
+        fun = con['fun']
+        if 'jac' in con:
+            jac = con['jac']
+
+    return NonlinearConstraint(fun, lb, ub, jac)

env-llmeval/lib/python3.10/site-packages/scipy/optimize/_dcsrch.py

@@ -0,0 +1,728 @@
+import numpy as np
+
+"""
+# 2023 - ported from minpack2.dcsrch, dcstep (Fortran) to Python
+c     MINPACK-1 Project. June 1983.
+c     Argonne National Laboratory.
+c     Jorge J. More' and David J. Thuente.
+c
+c     MINPACK-2 Project. November 1993.
+c     Argonne National Laboratory and University of Minnesota.
+c     Brett M. Averick, Richard G. Carter, and Jorge J. More'.
+"""
+
+# NOTE this file was linted by black on first commit, and can be kept that way.
+
+
+class DCSRCH:
+    """
+    Parameters
+    ----------
+    phi : callable phi(alpha)
+        Function at point `alpha`
+    derphi : callable phi'(alpha)
+        Objective function derivative. Returns a scalar.
+    ftol : float
+        A nonnegative tolerance for the sufficient decrease condition.
+    gtol : float
+        A nonnegative tolerance for the curvature condition.
+    xtol : float
+        A nonnegative relative tolerance for an acceptable step. The
+        subroutine exits with a warning if the relative difference between
+        sty and stx is less than xtol.
+    stpmin : float
+        A nonnegative lower bound for the step.
+    stpmax :
+        A nonnegative upper bound for the step.
+
+    Notes
+    -----
+
+    This subroutine finds a step that satisfies a sufficient
+    decrease condition and a curvature condition.
+
+    Each call of the subroutine updates an interval with
+    endpoints stx and sty. The interval is initially chosen
+    so that it contains a minimizer of the modified function
+
+           psi(stp) = f(stp) - f(0) - ftol*stp*f'(0).
+
+    If psi(stp) <= 0 and f'(stp) >= 0 for some step, then the
+    interval is chosen so that it contains a minimizer of f.
+
+    The algorithm is designed to find a step that satisfies
+    the sufficient decrease condition
+
+           f(stp) <= f(0) + ftol*stp*f'(0),
+
+    and the curvature condition
+
+           abs(f'(stp)) <= gtol*abs(f'(0)).
+
+    If ftol is less than gtol and if, for example, the function
+    is bounded below, then there is always a step which satisfies
+    both conditions.
+
+    If no step can be found that satisfies both conditions, then
+    the algorithm stops with a warning. In this case stp only
+    satisfies the sufficient decrease condition.
+
+    A typical invocation of dcsrch has the following outline:
+
+    Evaluate the function at stp = 0.0d0; store in f.
+    Evaluate the gradient at stp = 0.0d0; store in g.
+    Choose a starting step stp.
+
+    task = 'START'
+    10 continue
+        call dcsrch(stp,f,g,ftol,gtol,xtol,task,stpmin,stpmax,
+                   isave,dsave)
+        if (task .eq. 'FG') then
+           Evaluate the function and the gradient at stp
+           go to 10
+           end if
+
+    NOTE: The user must not alter work arrays between calls.
+
+    The subroutine statement is
+
+        subroutine dcsrch(f,g,stp,ftol,gtol,xtol,stpmin,stpmax,
+                         task,isave,dsave)
+        where
+
+    stp is a double precision variable.
+        On entry stp is the current estimate of a satisfactory
+            step. On initial entry, a positive initial estimate
+            must be provided.
+        On exit stp is the current estimate of a satisfactory step
+            if task = 'FG'. If task = 'CONV' then stp satisfies
+            the sufficient decrease and curvature condition.
+
+    f is a double precision variable.
+        On initial entry f is the value of the function at 0.
+        On subsequent entries f is the value of the
+            function at stp.
+        On exit f is the value of the function at stp.
+
+    g is a double precision variable.
+        On initial entry g is the derivative of the function at 0.
+        On subsequent entries g is the derivative of the
+           function at stp.
+        On exit g is the derivative of the function at stp.
+
+    ftol is a double precision variable.
+        On entry ftol specifies a nonnegative tolerance for the
+           sufficient decrease condition.
+        On exit ftol is unchanged.
+
+    gtol is a double precision variable.
+        On entry gtol specifies a nonnegative tolerance for the
+           curvature condition.
+        On exit gtol is unchanged.
+
+    xtol is a double precision variable.
+        On entry xtol specifies a nonnegative relative tolerance
+          for an acceptable step. The subroutine exits with a
+          warning if the relative difference between sty and stx
+          is less than xtol.
+
+        On exit xtol is unchanged.
+
+    task is a character variable of length at least 60.
+        On initial entry task must be set to 'START'.
+        On exit task indicates the required action:
+
+           If task(1:2) = 'FG' then evaluate the function and
+           derivative at stp and call dcsrch again.
+
+           If task(1:4) = 'CONV' then the search is successful.
+
+           If task(1:4) = 'WARN' then the subroutine is not able
+           to satisfy the convergence conditions. The exit value of
+           stp contains the best point found during the search.
+
+          If task(1:5) = 'ERROR' then there is an error in the
+          input arguments.
+
+        On exit with convergence, a warning or an error, the
+           variable task contains additional information.
+
+    stpmin is a double precision variable.
+        On entry stpmin is a nonnegative lower bound for the step.
+        On exit stpmin is unchanged.
+
+    stpmax is a double precision variable.
+        On entry stpmax is a nonnegative upper bound for the step.
+        On exit stpmax is unchanged.
+
+    isave is an integer work array of dimension 2.
+
+    dsave is a double precision work array of dimension 13.
+
+    Subprograms called
+
+      MINPACK-2 ... dcstep
+    MINPACK-1 Project. June 1983.
+    Argonne National Laboratory.
+    Jorge J. More' and David J. Thuente.
+
+    MINPACK-2 Project. November 1993.
+    Argonne National Laboratory and University of Minnesota.
+    Brett M. Averick, Richard G. Carter, and Jorge J. More'.
+    """
+
+    def __init__(self, phi, derphi, ftol, gtol, xtol, stpmin, stpmax):
+        self.stage = None
+        self.ginit = None
+        self.gtest = None
+        self.gx = None
+        self.gy = None
+        self.finit = None
+        self.fx = None
+        self.fy = None
+        self.stx = None
+        self.sty = None
+        self.stmin = None
+        self.stmax = None
+        self.width = None
+        self.width1 = None
+
+        # leave all assessment of tolerances/limits to the first call of
+        # this object
+        self.ftol = ftol
+        self.gtol = gtol
+        self.xtol = xtol
+        self.stpmin = stpmin
+        self.stpmax = stpmax
+
+        self.phi = phi
+        self.derphi = derphi
+
+    def __call__(self, alpha1, phi0=None, derphi0=None, maxiter=100):
+        """
+        Parameters
+        ----------
+        alpha1 : float
+            alpha1 is the current estimate of a satisfactory
+            step. A positive initial estimate must be provided.
+        phi0 : float
+            the value of `phi` at 0 (if known).
+        derphi0 : float
+            the derivative of `derphi` at 0 (if known).
+        maxiter : int
+
+        Returns
+        -------
+        alpha : float
+            Step size, or None if no suitable step was found.
+        phi : float
+            Value of `phi` at the new point `alpha`.
+        phi0 : float
+            Value of `phi` at `alpha=0`.
+        task : bytes
+            On exit task indicates status information.
+
+           If task[:4] == b'CONV' then the search is successful.
+
+           If task[:4] == b'WARN' then the subroutine is not able
+           to satisfy the convergence conditions. The exit value of
+           stp contains the best point found during the search.
+
+           If task[:5] == b'ERROR' then there is an error in the
+           input arguments.
+        """
+        if phi0 is None:
+            phi0 = self.phi(0.0)
+        if derphi0 is None:
+            derphi0 = self.derphi(0.0)
+
+        phi1 = phi0
+        derphi1 = derphi0
+
+        task = b"START"
+        for i in range(maxiter):
+            stp, phi1, derphi1, task = self._iterate(
+                alpha1, phi1, derphi1, task
+            )
+
+            if not np.isfinite(stp):
+                task = b"WARN"
+                stp = None
+                break
+
+            if task[:2] == b"FG":
+                alpha1 = stp
+                phi1 = self.phi(stp)
+                derphi1 = self.derphi(stp)
+            else:
+                break
+        else:
+            # maxiter reached, the line search did not converge
+            stp = None
+            task = b"WARNING: dcsrch did not converge within max iterations"
+
+        if task[:5] == b"ERROR" or task[:4] == b"WARN":
+            stp = None  # failed
+
+        return stp, phi1, phi0, task
+
+    def _iterate(self, stp, f, g, task):
+        """
+        Parameters
+        ----------
+        stp : float
+            The current estimate of a satisfactory step. On initial entry, a
+            positive initial estimate must be provided.
+        f : float
+            On first call f is the value of the function at 0. On subsequent
+            entries f should be the value of the function at stp.
+        g : float
+            On initial entry g is the derivative of the function at 0. On
+            subsequent entries g is the derivative of the function at stp.
+        task : bytes
+            On initial entry task must be set to 'START'.
+
+        On exit with convergence, a warning or an error, the
+           variable task contains additional information.
+
+
+        Returns
+        -------
+        stp, f, g, task: tuple
+
+            stp : float
+                the current estimate of a satisfactory step if task = 'FG'. If
+                task = 'CONV' then stp satisfies the sufficient decrease and
+                curvature condition.
+            f : float
+                the value of the function at stp.
+            g : float
+                the derivative of the function at stp.
+            task : bytes
+                On exit task indicates the required action:
+
+               If task(1:2) == b'FG' then evaluate the function and
+               derivative at stp and call dcsrch again.
+
+               If task(1:4) == b'CONV' then the search is successful.
+
+               If task(1:4) == b'WARN' then the subroutine is not able
+               to satisfy the convergence conditions. The exit value of
+               stp contains the best point found during the search.
+
+              If task(1:5) == b'ERROR' then there is an error in the
+              input arguments.
+        """
+        p5 = 0.5
+        p66 = 0.66
+        xtrapl = 1.1
+        xtrapu = 4.0
+
+        if task[:5] == b"START":
+            if stp < self.stpmin:
+                task = b"ERROR: STP .LT. STPMIN"
+            if stp > self.stpmax:
+                task = b"ERROR: STP .GT. STPMAX"
+            if g >= 0:
+                task = b"ERROR: INITIAL G .GE. ZERO"
+            if self.ftol < 0:
+                task = b"ERROR: FTOL .LT. ZERO"
+            if self.gtol < 0:
+                task = b"ERROR: GTOL .LT. ZERO"
+            if self.xtol < 0:
+                task = b"ERROR: XTOL .LT. ZERO"
+            if self.stpmin < 0:
+                task = b"ERROR: STPMIN .LT. ZERO"
+            if self.stpmax < self.stpmin:
+                task = b"ERROR: STPMAX .LT. STPMIN"
+
+            if task[:5] == b"ERROR":
+                return stp, f, g, task
+
+            # Initialize local variables.
+
+            self.brackt = False
+            self.stage = 1
+            self.finit = f
+            self.ginit = g
+            self.gtest = self.ftol * self.ginit
+            self.width = self.stpmax - self.stpmin
+            self.width1 = self.width / p5
+
+            # The variables stx, fx, gx contain the values of the step,
+            # function, and derivative at the best step.
+            # The variables sty, fy, gy contain the value of the step,
+            # function, and derivative at sty.
+            # The variables stp, f, g contain the values of the step,
+            # function, and derivative at stp.
+
+            self.stx = 0.0
+            self.fx = self.finit
+            self.gx = self.ginit
+            self.sty = 0.0
+            self.fy = self.finit
+            self.gy = self.ginit
+            self.stmin = 0
+            self.stmax = stp + xtrapu * stp
+            task = b"FG"
+            return stp, f, g, task
+
+        # in the original Fortran this was a location to restore variables
+        # we don't need to do that because they're attributes.
+
+        # If psi(stp) <= 0 and f'(stp) >= 0 for some step, then the
+        # algorithm enters the second stage.
+        ftest = self.finit + stp * self.gtest
+
+        if self.stage == 1 and f <= ftest and g >= 0:
+            self.stage = 2
+
+        # test for warnings
+        if self.brackt and (stp <= self.stmin or stp >= self.stmax):
+            task = b"WARNING: ROUNDING ERRORS PREVENT PROGRESS"
+        if self.brackt and self.stmax - self.stmin <= self.xtol * self.stmax:
+            task = b"WARNING: XTOL TEST SATISFIED"
+        if stp == self.stpmax and f <= ftest and g <= self.gtest:
+            task = b"WARNING: STP = STPMAX"
+        if stp == self.stpmin and (f > ftest or g >= self.gtest):
+            task = b"WARNING: STP = STPMIN"
+
+        # test for convergence
+        if f <= ftest and abs(g) <= self.gtol * -self.ginit:
+            task = b"CONVERGENCE"
+
+        # test for termination
+        if task[:4] == b"WARN" or task[:4] == b"CONV":
+            return stp, f, g, task
+
+        # A modified function is used to predict the step during the
+        # first stage if a lower function value has been obtained but
+        # the decrease is not sufficient.
+        if self.stage == 1 and f <= self.fx and f > ftest:
+            # Define the modified function and derivative values.
+            fm = f - stp * self.gtest
+            fxm = self.fx - self.stx * self.gtest
+            fym = self.fy - self.sty * self.gtest
+            gm = g - self.gtest
+            gxm = self.gx - self.gtest
+            gym = self.gy - self.gtest
+
+            # Call dcstep to update stx, sty, and to compute the new step.
+            # dcstep can have several operations which can produce NaN
+            # e.g. inf/inf. Filter these out.
+            with np.errstate(invalid="ignore", over="ignore"):
+                tup = dcstep(
+                    self.stx,
+                    fxm,
+                    gxm,
+                    self.sty,
+                    fym,
+                    gym,
+                    stp,
+                    fm,
+                    gm,
+                    self.brackt,
+                    self.stmin,
+                    self.stmax,
+                )
+                self.stx, fxm, gxm, self.sty, fym, gym, stp, self.brackt = tup
+
+            # Reset the function and derivative values for f
+            self.fx = fxm + self.stx * self.gtest
+            self.fy = fym + self.sty * self.gtest
+            self.gx = gxm + self.gtest
+            self.gy = gym + self.gtest
+
+        else:
+            # Call dcstep to update stx, sty, and to compute the new step.
+            # dcstep can have several operations which can produce NaN
+            # e.g. inf/inf. Filter these out.
+
+            with np.errstate(invalid="ignore", over="ignore"):
+                tup = dcstep(
+                    self.stx,
+                    self.fx,
+                    self.gx,
+                    self.sty,
+                    self.fy,
+                    self.gy,
+                    stp,
+                    f,
+                    g,
+                    self.brackt,
+                    self.stmin,
+                    self.stmax,
+                )
+            (
+                self.stx,
+                self.fx,
+                self.gx,
+                self.sty,
+                self.fy,
+                self.gy,
+                stp,
+                self.brackt,
+            ) = tup
+
+        # Decide if a bisection step is needed
+        if self.brackt:
+            if abs(self.sty - self.stx) >= p66 * self.width1:
+                stp = self.stx + p5 * (self.sty - self.stx)
+            self.width1 = self.width
+            self.width = abs(self.sty - self.stx)
+
+        # Set the minimum and maximum steps allowed for stp.
+        if self.brackt:
+            self.stmin = min(self.stx, self.sty)
+            self.stmax = max(self.stx, self.sty)
+        else:
+            self.stmin = stp + xtrapl * (stp - self.stx)
+            self.stmax = stp + xtrapu * (stp - self.stx)
+
+        # Force the step to be within the bounds stpmax and stpmin.
+        stp = np.clip(stp, self.stpmin, self.stpmax)
+
+        # If further progress is not possible, let stp be the best
+        # point obtained during the search.
+        if (
+            self.brackt
+            and (stp <= self.stmin or stp >= self.stmax)
+            or (
+                self.brackt
+                and self.stmax - self.stmin <= self.xtol * self.stmax
+            )
+        ):
+            stp = self.stx
+
+        # Obtain another function and derivative
+        task = b"FG"
+        return stp, f, g, task
+
+
+def dcstep(stx, fx, dx, sty, fy, dy, stp, fp, dp, brackt, stpmin, stpmax):
+    """
+    Subroutine dcstep
+
+    This subroutine computes a safeguarded step for a search
+    procedure and updates an interval that contains a step that
+    satisfies a sufficient decrease and a curvature condition.
+
+    The parameter stx contains the step with the least function
+    value. If brackt is set to .true. then a minimizer has
+    been bracketed in an interval with endpoints stx and sty.
+    The parameter stp contains the current step.
+    The subroutine assumes that if brackt is set to .true. then
+
+        min(stx,sty) < stp < max(stx,sty),
+
+    and that the derivative at stx is negative in the direction
+    of the step.
+
+    The subroutine statement is
+
+      subroutine dcstep(stx,fx,dx,sty,fy,dy,stp,fp,dp,brackt,
+                        stpmin,stpmax)
+
+    where
+
+    stx is a double precision variable.
+        On entry stx is the best step obtained so far and is an
+          endpoint of the interval that contains the minimizer.
+        On exit stx is the updated best step.
+
+    fx is a double precision variable.
+        On entry fx is the function at stx.
+        On exit fx is the function at stx.
+
+    dx is a double precision variable.
+        On entry dx is the derivative of the function at
+          stx. The derivative must be negative in the direction of
+          the step, that is, dx and stp - stx must have opposite
+          signs.
+        On exit dx is the derivative of the function at stx.
+
+    sty is a double precision variable.
+        On entry sty is the second endpoint of the interval that
+          contains the minimizer.
+        On exit sty is the updated endpoint of the interval that
+          contains the minimizer.
+
+    fy is a double precision variable.
+        On entry fy is the function at sty.
+        On exit fy is the function at sty.
+
+    dy is a double precision variable.
+        On entry dy is the derivative of the function at sty.
+        On exit dy is the derivative of the function at the exit sty.
+
+    stp is a double precision variable.
+        On entry stp is the current step. If brackt is set to .true.
+          then on input stp must be between stx and sty.
+        On exit stp is a new trial step.
+
+    fp is a double precision variable.
+        On entry fp is the function at stp
+        On exit fp is unchanged.
+
+    dp is a double precision variable.
+        On entry dp is the derivative of the function at stp.
+        On exit dp is unchanged.
+
+    brackt is an logical variable.
+        On entry brackt specifies if a minimizer has been bracketed.
+            Initially brackt must be set to .false.
+        On exit brackt specifies if a minimizer has been bracketed.
+            When a minimizer is bracketed brackt is set to .true.
+
+    stpmin is a double precision variable.
+        On entry stpmin is a lower bound for the step.
+        On exit stpmin is unchanged.
+
+    stpmax is a double precision variable.
+        On entry stpmax is an upper bound for the step.
+        On exit stpmax is unchanged.
+
+    MINPACK-1 Project. June 1983
+    Argonne National Laboratory.
+    Jorge J. More' and David J. Thuente.
+
+    MINPACK-2 Project. November 1993.
+    Argonne National Laboratory and University of Minnesota.
+    Brett M. Averick and Jorge J. More'.
+
+    """
+    sgn_dp = np.sign(dp)
+    sgn_dx = np.sign(dx)
+
+    # sgnd = dp * (dx / abs(dx))
+    sgnd = sgn_dp * sgn_dx
+
+    # First case: A higher function value. The minimum is bracketed.
+    # If the cubic step is closer to stx than the quadratic step, the
+    # cubic step is taken, otherwise the average of the cubic and
+    # quadratic steps is taken.
+    if fp > fx:
+        theta = 3.0 * (fx - fp) / (stp - stx) + dx + dp
+        s = max(abs(theta), abs(dx), abs(dp))
+        gamma = s * np.sqrt((theta / s) ** 2 - (dx / s) * (dp / s))
+        if stp < stx:
+            gamma *= -1
+        p = (gamma - dx) + theta
+        q = ((gamma - dx) + gamma) + dp
+        r = p / q
+        stpc = stx + r * (stp - stx)
+        stpq = stx + ((dx / ((fx - fp) / (stp - stx) + dx)) / 2.0) * (stp - stx)
+        if abs(stpc - stx) <= abs(stpq - stx):
+            stpf = stpc
+        else:
+            stpf = stpc + (stpq - stpc) / 2.0
+        brackt = True
+    elif sgnd < 0.0:
+        # Second case: A lower function value and derivatives of opposite
+        # sign. The minimum is bracketed. If the cubic step is farther from
+        # stp than the secant step, the cubic step is taken, otherwise the
+        # secant step is taken.
+        theta = 3 * (fx - fp) / (stp - stx) + dx + dp
+        s = max(abs(theta), abs(dx), abs(dp))
+        gamma = s * np.sqrt((theta / s) ** 2 - (dx / s) * (dp / s))
+        if stp > stx:
+            gamma *= -1
+        p = (gamma - dp) + theta
+        q = ((gamma - dp) + gamma) + dx
+        r = p / q
+        stpc = stp + r * (stx - stp)
+        stpq = stp + (dp / (dp - dx)) * (stx - stp)
+        if abs(stpc - stp) > abs(stpq - stp):
+            stpf = stpc
+        else:
+            stpf = stpq
+        brackt = True
+    elif abs(dp) < abs(dx):
+        # Third case: A lower function value, derivatives of the same sign,
+        # and the magnitude of the derivative decreases.
+
+        # The cubic step is computed only if the cubic tends to infinity
+        # in the direction of the step or if the minimum of the cubic
+        # is beyond stp. Otherwise the cubic step is defined to be the
+        # secant step.
+        theta = 3 * (fx - fp) / (stp - stx) + dx + dp
+        s = max(abs(theta), abs(dx), abs(dp))
+
+        # The case gamma = 0 only arises if the cubic does not tend
+        # to infinity in the direction of the step.
+        gamma = s * np.sqrt(max(0, (theta / s) ** 2 - (dx / s) * (dp / s)))
+        if stp > stx:
+            gamma = -gamma
+        p = (gamma - dp) + theta
+        q = (gamma + (dx - dp)) + gamma
+        r = p / q
+        if r < 0 and gamma != 0:
+            stpc = stp + r * (stx - stp)
+        elif stp > stx:
+            stpc = stpmax
+        else:
+            stpc = stpmin
+        stpq = stp + (dp / (dp - dx)) * (stx - stp)
+
+        if brackt:
+            # A minimizer has been bracketed. If the cubic step is
+            # closer to stp than the secant step, the cubic step is
+            # taken, otherwise the secant step is taken.
+            if abs(stpc - stp) < abs(stpq - stp):
+                stpf = stpc
+            else:
+                stpf = stpq
+
+            if stp > stx:
+                stpf = min(stp + 0.66 * (sty - stp), stpf)
+            else:
+                stpf = max(stp + 0.66 * (sty - stp), stpf)
+        else:
+            # A minimizer has not been bracketed. If the cubic step is
+            # farther from stp than the secant step, the cubic step is
+            # taken, otherwise the secant step is taken.
+            if abs(stpc - stp) > abs(stpq - stp):
+                stpf = stpc
+            else:
+                stpf = stpq
+            stpf = np.clip(stpf, stpmin, stpmax)
+
+    else:
+        # Fourth case: A lower function value, derivatives of the same sign,
+        # and the magnitude of the derivative does not decrease. If the
+        # minimum is not bracketed, the step is either stpmin or stpmax,
+        # otherwise the cubic step is taken.
+        if brackt:
+            theta = 3.0 * (fp - fy) / (sty - stp) + dy + dp
+            s = max(abs(theta), abs(dy), abs(dp))
+            gamma = s * np.sqrt((theta / s) ** 2 - (dy / s) * (dp / s))
+            if stp > sty:
+                gamma = -gamma
+            p = (gamma - dp) + theta
+            q = ((gamma - dp) + gamma) + dy
+            r = p / q
+            stpc = stp + r * (sty - stp)
+            stpf = stpc
+        elif stp > stx:
+            stpf = stpmax
+        else:
+            stpf = stpmin
+
+    # Update the interval which contains a minimizer.
+    if fp > fx:
+        sty = stp
+        fy = fp
+        dy = dp
+    else:
+        if sgnd < 0:
+            sty = stx
+            fy = fx
+            dy = dx
+        stx = stp
+        fx = fp
+        dx = dp
+
+    # Compute the new step.
+    stp = stpf
+
+    return stx, fx, dx, sty, fy, dy, stp, brackt

env-llmeval/lib/python3.10/site-packages/scipy/optimize/_differentiable_functions.py

@@ -0,0 +1,646 @@
+import numpy as np
+import scipy.sparse as sps
+from ._numdiff import approx_derivative, group_columns
+from ._hessian_update_strategy import HessianUpdateStrategy
+from scipy.sparse.linalg import LinearOperator
+from scipy._lib._array_api import atleast_nd, array_namespace
+
+
+FD_METHODS = ('2-point', '3-point', 'cs')
+
+
+class ScalarFunction:
+    """Scalar function and its derivatives.
+
+    This class defines a scalar function F: R^n->R and methods for
+    computing or approximating its first and second derivatives.
+
+    Parameters
+    ----------
+    fun : callable
+        evaluates the scalar function. Must be of the form ``fun(x, *args)``,
+        where ``x`` is the argument in the form of a 1-D array and ``args`` is
+        a tuple of any additional fixed parameters needed to completely specify
+        the function. Should return a scalar.
+    x0 : array-like
+        Provides an initial set of variables for evaluating fun. Array of real
+        elements of size (n,), where 'n' is the number of independent
+        variables.
+    args : tuple, optional
+        Any additional fixed parameters needed to completely specify the scalar
+        function.
+    grad : {callable, '2-point', '3-point', 'cs'}
+        Method for computing the gradient vector.
+        If it is a callable, it should be a function that returns the gradient
+        vector:
+
+            ``grad(x, *args) -> array_like, shape (n,)``
+
+        where ``x`` is an array with shape (n,) and ``args`` is a tuple with
+        the fixed parameters.
+        Alternatively, the keywords  {'2-point', '3-point', 'cs'} can be used
+        to select a finite difference scheme for numerical estimation of the
+        gradient with a relative step size. These finite difference schemes
+        obey any specified `bounds`.
+    hess : {callable, '2-point', '3-point', 'cs', HessianUpdateStrategy}
+        Method for computing the Hessian matrix. If it is callable, it should
+        return the  Hessian matrix:
+
+            ``hess(x, *args) -> {LinearOperator, spmatrix, array}, (n, n)``
+
+        where x is a (n,) ndarray and `args` is a tuple with the fixed
+        parameters. Alternatively, the keywords {'2-point', '3-point', 'cs'}
+        select a finite difference scheme for numerical estimation. Or, objects
+        implementing `HessianUpdateStrategy` interface can be used to
+        approximate the Hessian.
+        Whenever the gradient is estimated via finite-differences, the Hessian
+        cannot be estimated with options {'2-point', '3-point', 'cs'} and needs
+        to be estimated using one of the quasi-Newton strategies.
+    finite_diff_rel_step : None or array_like
+        Relative step size to use. The absolute step size is computed as
+        ``h = finite_diff_rel_step * sign(x0) * max(1, abs(x0))``, possibly
+        adjusted to fit into the bounds. For ``method='3-point'`` the sign
+        of `h` is ignored. If None then finite_diff_rel_step is selected
+        automatically,
+    finite_diff_bounds : tuple of array_like
+        Lower and upper bounds on independent variables. Defaults to no bounds,
+        (-np.inf, np.inf). Each bound must match the size of `x0` or be a
+        scalar, in the latter case the bound will be the same for all
+        variables. Use it to limit the range of function evaluation.
+    epsilon : None or array_like, optional
+        Absolute step size to use, possibly adjusted to fit into the bounds.
+        For ``method='3-point'`` the sign of `epsilon` is ignored. By default
+        relative steps are used, only if ``epsilon is not None`` are absolute
+        steps used.
+
+    Notes
+    -----
+    This class implements a memoization logic. There are methods `fun`,
+    `grad`, hess` and corresponding attributes `f`, `g` and `H`. The following
+    things should be considered:
+
+        1. Use only public methods `fun`, `grad` and `hess`.
+        2. After one of the methods is called, the corresponding attribute
+           will be set. However, a subsequent call with a different argument
+           of *any* of the methods may overwrite the attribute.
+    """
+    def __init__(self, fun, x0, args, grad, hess, finite_diff_rel_step,
+                 finite_diff_bounds, epsilon=None):
+        if not callable(grad) and grad not in FD_METHODS:
+            raise ValueError(
+                f"`grad` must be either callable or one of {FD_METHODS}."
+            )
+
+        if not (callable(hess) or hess in FD_METHODS
+                or isinstance(hess, HessianUpdateStrategy)):
+            raise ValueError(
+                f"`hess` must be either callable, HessianUpdateStrategy"
+                f" or one of {FD_METHODS}."
+            )
+
+        if grad in FD_METHODS and hess in FD_METHODS:
+            raise ValueError("Whenever the gradient is estimated via "
+                             "finite-differences, we require the Hessian "
+                             "to be estimated using one of the "
+                             "quasi-Newton strategies.")
+
+        self.xp = xp = array_namespace(x0)
+        _x = atleast_nd(x0, ndim=1, xp=xp)
+        _dtype = xp.float64
+        if xp.isdtype(_x.dtype, "real floating"):
+            _dtype = _x.dtype
+
+        # promotes to floating
+        self.x = xp.astype(_x, _dtype)
+        self.x_dtype = _dtype
+        self.n = self.x.size
+        self.nfev = 0
+        self.ngev = 0
+        self.nhev = 0
+        self.f_updated = False
+        self.g_updated = False
+        self.H_updated = False
+
+        self._lowest_x = None
+        self._lowest_f = np.inf
+
+        finite_diff_options = {}
+        if grad in FD_METHODS:
+            finite_diff_options["method"] = grad
+            finite_diff_options["rel_step"] = finite_diff_rel_step
+            finite_diff_options["abs_step"] = epsilon
+            finite_diff_options["bounds"] = finite_diff_bounds
+        if hess in FD_METHODS:
+            finite_diff_options["method"] = hess
+            finite_diff_options["rel_step"] = finite_diff_rel_step
+            finite_diff_options["abs_step"] = epsilon
+            finite_diff_options["as_linear_operator"] = True
+
+        # Function evaluation
+        def fun_wrapped(x):
+            self.nfev += 1
+            # Send a copy because the user may overwrite it.
+            # Overwriting results in undefined behaviour because
+            # fun(self.x) will change self.x, with the two no longer linked.
+            fx = fun(np.copy(x), *args)
+            # Make sure the function returns a true scalar
+            if not np.isscalar(fx):
+                try:
+                    fx = np.asarray(fx).item()
+                except (TypeError, ValueError) as e:
+                    raise ValueError(
+                        "The user-provided objective function "
+                        "must return a scalar value."
+                    ) from e
+
+            if fx < self._lowest_f:
+                self._lowest_x = x
+                self._lowest_f = fx
+
+            return fx
+
+        def update_fun():
+            self.f = fun_wrapped(self.x)
+
+        self._update_fun_impl = update_fun
+        self._update_fun()
+
+        # Gradient evaluation
+        if callable(grad):
+            def grad_wrapped(x):
+                self.ngev += 1
+                return np.atleast_1d(grad(np.copy(x), *args))
+
+            def update_grad():
+                self.g = grad_wrapped(self.x)
+
+        elif grad in FD_METHODS:
+            def update_grad():
+                self._update_fun()
+                self.ngev += 1
+                self.g = approx_derivative(fun_wrapped, self.x, f0=self.f,
+                                           **finite_diff_options)
+
+        self._update_grad_impl = update_grad
+        self._update_grad()
+
+        # Hessian Evaluation
+        if callable(hess):
+            self.H = hess(np.copy(x0), *args)
+            self.H_updated = True
+            self.nhev += 1
+
+            if sps.issparse(self.H):
+                def hess_wrapped(x):
+                    self.nhev += 1
+                    return sps.csr_matrix(hess(np.copy(x), *args))
+                self.H = sps.csr_matrix(self.H)
+
+            elif isinstance(self.H, LinearOperator):
+                def hess_wrapped(x):
+                    self.nhev += 1
+                    return hess(np.copy(x), *args)
+
+            else:
+                def hess_wrapped(x):
+                    self.nhev += 1
+                    return np.atleast_2d(np.asarray(hess(np.copy(x), *args)))
+                self.H = np.atleast_2d(np.asarray(self.H))
+
+            def update_hess():
+                self.H = hess_wrapped(self.x)
+
+        elif hess in FD_METHODS:
+            def update_hess():
+                self._update_grad()
+                self.H = approx_derivative(grad_wrapped, self.x, f0=self.g,
+                                           **finite_diff_options)
+                return self.H
+
+            update_hess()
+            self.H_updated = True
+        elif isinstance(hess, HessianUpdateStrategy):
+            self.H = hess
+            self.H.initialize(self.n, 'hess')
+            self.H_updated = True
+            self.x_prev = None
+            self.g_prev = None
+
+            def update_hess():
+                self._update_grad()
+                self.H.update(self.x - self.x_prev, self.g - self.g_prev)
+
+        self._update_hess_impl = update_hess
+
+        if isinstance(hess, HessianUpdateStrategy):
+            def update_x(x):
+                self._update_grad()
+                self.x_prev = self.x
+                self.g_prev = self.g
+                # ensure that self.x is a copy of x. Don't store a reference
+                # otherwise the memoization doesn't work properly.
+
+                _x = atleast_nd(x, ndim=1, xp=self.xp)
+                self.x = self.xp.astype(_x, self.x_dtype)
+                self.f_updated = False
+                self.g_updated = False
+                self.H_updated = False
+                self._update_hess()
+        else:
+            def update_x(x):
+                # ensure that self.x is a copy of x. Don't store a reference
+                # otherwise the memoization doesn't work properly.
+                _x = atleast_nd(x, ndim=1, xp=self.xp)
+                self.x = self.xp.astype(_x, self.x_dtype)
+                self.f_updated = False
+                self.g_updated = False
+                self.H_updated = False
+        self._update_x_impl = update_x
+
+    def _update_fun(self):
+        if not self.f_updated:
+            self._update_fun_impl()
+            self.f_updated = True
+
+    def _update_grad(self):
+        if not self.g_updated:
+            self._update_grad_impl()
+            self.g_updated = True
+
+    def _update_hess(self):
+        if not self.H_updated:
+            self._update_hess_impl()
+            self.H_updated = True
+
+    def fun(self, x):
+        if not np.array_equal(x, self.x):
+            self._update_x_impl(x)
+        self._update_fun()
+        return self.f
+
+    def grad(self, x):
+        if not np.array_equal(x, self.x):
+            self._update_x_impl(x)
+        self._update_grad()
+        return self.g
+
+    def hess(self, x):
+        if not np.array_equal(x, self.x):
+            self._update_x_impl(x)
+        self._update_hess()
+        return self.H
+
+    def fun_and_grad(self, x):
+        if not np.array_equal(x, self.x):
+            self._update_x_impl(x)
+        self._update_fun()
+        self._update_grad()
+        return self.f, self.g
+
+
+class VectorFunction:
+    """Vector function and its derivatives.
+
+    This class defines a vector function F: R^n->R^m and methods for
+    computing or approximating its first and second derivatives.
+
+    Notes
+    -----
+    This class implements a memoization logic. There are methods `fun`,
+    `jac`, hess` and corresponding attributes `f`, `J` and `H`. The following
+    things should be considered:
+
+        1. Use only public methods `fun`, `jac` and `hess`.
+        2. After one of the methods is called, the corresponding attribute
+           will be set. However, a subsequent call with a different argument
+           of *any* of the methods may overwrite the attribute.
+    """
+    def __init__(self, fun, x0, jac, hess,
+                 finite_diff_rel_step, finite_diff_jac_sparsity,
+                 finite_diff_bounds, sparse_jacobian):
+        if not callable(jac) and jac not in FD_METHODS:
+            raise ValueError(f"`jac` must be either callable or one of {FD_METHODS}.")
+
+        if not (callable(hess) or hess in FD_METHODS
+                or isinstance(hess, HessianUpdateStrategy)):
+            raise ValueError("`hess` must be either callable,"
+                             f"HessianUpdateStrategy or one of {FD_METHODS}.")
+
+        if jac in FD_METHODS and hess in FD_METHODS:
+            raise ValueError("Whenever the Jacobian is estimated via "
+                             "finite-differences, we require the Hessian to "
+                             "be estimated using one of the quasi-Newton "
+                             "strategies.")
+
+        self.xp = xp = array_namespace(x0)
+        _x = atleast_nd(x0, ndim=1, xp=xp)
+        _dtype = xp.float64
+        if xp.isdtype(_x.dtype, "real floating"):
+            _dtype = _x.dtype
+
+        # promotes to floating
+        self.x = xp.astype(_x, _dtype)
+        self.x_dtype = _dtype
+
+        self.n = self.x.size
+        self.nfev = 0
+        self.njev = 0
+        self.nhev = 0
+        self.f_updated = False
+        self.J_updated = False
+        self.H_updated = False
+
+        finite_diff_options = {}
+        if jac in FD_METHODS:
+            finite_diff_options["method"] = jac
+            finite_diff_options["rel_step"] = finite_diff_rel_step
+            if finite_diff_jac_sparsity is not None:
+                sparsity_groups = group_columns(finite_diff_jac_sparsity)
+                finite_diff_options["sparsity"] = (finite_diff_jac_sparsity,
+                                                   sparsity_groups)
+            finite_diff_options["bounds"] = finite_diff_bounds
+            self.x_diff = np.copy(self.x)
+        if hess in FD_METHODS:
+            finite_diff_options["method"] = hess
+            finite_diff_options["rel_step"] = finite_diff_rel_step
+            finite_diff_options["as_linear_operator"] = True
+            self.x_diff = np.copy(self.x)
+        if jac in FD_METHODS and hess in FD_METHODS:
+            raise ValueError("Whenever the Jacobian is estimated via "
+                             "finite-differences, we require the Hessian to "
+                             "be estimated using one of the quasi-Newton "
+                             "strategies.")
+
+        # Function evaluation
+        def fun_wrapped(x):
+            self.nfev += 1
+            return np.atleast_1d(fun(x))
+
+        def update_fun():
+            self.f = fun_wrapped(self.x)
+
+        self._update_fun_impl = update_fun
+        update_fun()
+
+        self.v = np.zeros_like(self.f)
+        self.m = self.v.size
+
+        # Jacobian Evaluation
+        if callable(jac):
+            self.J = jac(self.x)
+            self.J_updated = True
+            self.njev += 1
+
+            if (sparse_jacobian or
+                    sparse_jacobian is None and sps.issparse(self.J)):
+                def jac_wrapped(x):
+                    self.njev += 1
+                    return sps.csr_matrix(jac(x))
+                self.J = sps.csr_matrix(self.J)
+                self.sparse_jacobian = True
+
+            elif sps.issparse(self.J):
+                def jac_wrapped(x):
+                    self.njev += 1
+                    return jac(x).toarray()
+                self.J = self.J.toarray()
+                self.sparse_jacobian = False
+
+            else:
+                def jac_wrapped(x):
+                    self.njev += 1
+                    return np.atleast_2d(jac(x))
+                self.J = np.atleast_2d(self.J)
+                self.sparse_jacobian = False
+
+            def update_jac():
+                self.J = jac_wrapped(self.x)
+
+        elif jac in FD_METHODS:
+            self.J = approx_derivative(fun_wrapped, self.x, f0=self.f,
+                                       **finite_diff_options)
+            self.J_updated = True
+
+            if (sparse_jacobian or
+                    sparse_jacobian is None and sps.issparse(self.J)):
+                def update_jac():
+                    self._update_fun()
+                    self.J = sps.csr_matrix(
+                        approx_derivative(fun_wrapped, self.x, f0=self.f,
+                                          **finite_diff_options))
+                self.J = sps.csr_matrix(self.J)
+                self.sparse_jacobian = True
+
+            elif sps.issparse(self.J):
+                def update_jac():
+                    self._update_fun()
+                    self.J = approx_derivative(fun_wrapped, self.x, f0=self.f,
+                                               **finite_diff_options).toarray()
+                self.J = self.J.toarray()
+                self.sparse_jacobian = False
+
+            else:
+                def update_jac():
+                    self._update_fun()
+                    self.J = np.atleast_2d(
+                        approx_derivative(fun_wrapped, self.x, f0=self.f,
+                                          **finite_diff_options))
+                self.J = np.atleast_2d(self.J)
+                self.sparse_jacobian = False
+
+        self._update_jac_impl = update_jac
+
+        # Define Hessian
+        if callable(hess):
+            self.H = hess(self.x, self.v)
+            self.H_updated = True
+            self.nhev += 1
+
+            if sps.issparse(self.H):
+                def hess_wrapped(x, v):
+                    self.nhev += 1
+                    return sps.csr_matrix(hess(x, v))
+                self.H = sps.csr_matrix(self.H)
+
+            elif isinstance(self.H, LinearOperator):
+                def hess_wrapped(x, v):
+                    self.nhev += 1
+                    return hess(x, v)
+
+            else:
+                def hess_wrapped(x, v):
+                    self.nhev += 1
+                    return np.atleast_2d(np.asarray(hess(x, v)))
+                self.H = np.atleast_2d(np.asarray(self.H))
+
+            def update_hess():
+                self.H = hess_wrapped(self.x, self.v)
+        elif hess in FD_METHODS:
+            def jac_dot_v(x, v):
+                return jac_wrapped(x).T.dot(v)
+
+            def update_hess():
+                self._update_jac()
+                self.H = approx_derivative(jac_dot_v, self.x,
+                                           f0=self.J.T.dot(self.v),
+                                           args=(self.v,),
+                                           **finite_diff_options)
+            update_hess()
+            self.H_updated = True
+        elif isinstance(hess, HessianUpdateStrategy):
+            self.H = hess
+            self.H.initialize(self.n, 'hess')
+            self.H_updated = True
+            self.x_prev = None
+            self.J_prev = None
+
+            def update_hess():
+                self._update_jac()
+                # When v is updated before x was updated, then x_prev and
+                # J_prev are None and we need this check.
+                if self.x_prev is not None and self.J_prev is not None:
+                    delta_x = self.x - self.x_prev
+                    delta_g = self.J.T.dot(self.v) - self.J_prev.T.dot(self.v)
+                    self.H.update(delta_x, delta_g)
+
+        self._update_hess_impl = update_hess
+
+        if isinstance(hess, HessianUpdateStrategy):
+            def update_x(x):
+                self._update_jac()
+                self.x_prev = self.x
+                self.J_prev = self.J
+                _x = atleast_nd(x, ndim=1, xp=self.xp)
+                self.x = self.xp.astype(_x, self.x_dtype)
+                self.f_updated = False
+                self.J_updated = False
+                self.H_updated = False
+                self._update_hess()
+        else:
+            def update_x(x):
+                _x = atleast_nd(x, ndim=1, xp=self.xp)
+                self.x = self.xp.astype(_x, self.x_dtype)
+                self.f_updated = False
+                self.J_updated = False
+                self.H_updated = False
+
+        self._update_x_impl = update_x
+
+    def _update_v(self, v):
+        if not np.array_equal(v, self.v):
+            self.v = v
+            self.H_updated = False
+
+    def _update_x(self, x):
+        if not np.array_equal(x, self.x):
+            self._update_x_impl(x)
+
+    def _update_fun(self):
+        if not self.f_updated:
+            self._update_fun_impl()
+            self.f_updated = True
+
+    def _update_jac(self):
+        if not self.J_updated:
+            self._update_jac_impl()
+            self.J_updated = True
+
+    def _update_hess(self):
+        if not self.H_updated:
+            self._update_hess_impl()
+            self.H_updated = True
+
+    def fun(self, x):
+        self._update_x(x)
+        self._update_fun()
+        return self.f
+
+    def jac(self, x):
+        self._update_x(x)
+        self._update_jac()
+        return self.J
+
+    def hess(self, x, v):
+        # v should be updated before x.
+        self._update_v(v)
+        self._update_x(x)
+        self._update_hess()
+        return self.H
+
+
+class LinearVectorFunction:
+    """Linear vector function and its derivatives.
+
+    Defines a linear function F = A x, where x is N-D vector and
+    A is m-by-n matrix. The Jacobian is constant and equals to A. The Hessian
+    is identically zero and it is returned as a csr matrix.
+    """
+    def __init__(self, A, x0, sparse_jacobian):
+        if sparse_jacobian or sparse_jacobian is None and sps.issparse(A):
+            self.J = sps.csr_matrix(A)
+            self.sparse_jacobian = True
+        elif sps.issparse(A):
+            self.J = A.toarray()
+            self.sparse_jacobian = False
+        else:
+            # np.asarray makes sure A is ndarray and not matrix
+            self.J = np.atleast_2d(np.asarray(A))
+            self.sparse_jacobian = False
+
+        self.m, self.n = self.J.shape
+
+        self.xp = xp = array_namespace(x0)
+        _x = atleast_nd(x0, ndim=1, xp=xp)
+        _dtype = xp.float64
+        if xp.isdtype(_x.dtype, "real floating"):
+            _dtype = _x.dtype
+
+        # promotes to floating
+        self.x = xp.astype(_x, _dtype)
+        self.x_dtype = _dtype
+
+        self.f = self.J.dot(self.x)
+        self.f_updated = True
+
+        self.v = np.zeros(self.m, dtype=float)
+        self.H = sps.csr_matrix((self.n, self.n))
+
+    def _update_x(self, x):
+        if not np.array_equal(x, self.x):
+            _x = atleast_nd(x, ndim=1, xp=self.xp)
+            self.x = self.xp.astype(_x, self.x_dtype)
+            self.f_updated = False
+
+    def fun(self, x):
+        self._update_x(x)
+        if not self.f_updated:
+            self.f = self.J.dot(x)
+            self.f_updated = True
+        return self.f
+
+    def jac(self, x):
+        self._update_x(x)
+        return self.J
+
+    def hess(self, x, v):
+        self._update_x(x)
+        self.v = v
+        return self.H
+
+
+class IdentityVectorFunction(LinearVectorFunction):
+    """Identity vector function and its derivatives.
+
+    The Jacobian is the identity matrix, returned as a dense array when
+    `sparse_jacobian=False` and as a csr matrix otherwise. The Hessian is
+    identically zero and it is returned as a csr matrix.
+    """
+    def __init__(self, x0, sparse_jacobian):
+        n = len(x0)
+        if sparse_jacobian or sparse_jacobian is None:
+            A = sps.eye(n, format='csr')
+            sparse_jacobian = True
+        else:
+            A = np.eye(n)
+            sparse_jacobian = False
+        super().__init__(A, x0, sparse_jacobian)

env-llmeval/lib/python3.10/site-packages/scipy/optimize/_differentiate.py

@@ -0,0 +1,669 @@
+# mypy: disable-error-code="attr-defined"
+import numpy as np
+import scipy._lib._elementwise_iterative_method as eim
+from scipy._lib._util import _RichResult
+
+_EERRORINCREASE = -1  # used in _differentiate
+
+def _differentiate_iv(func, x, args, atol, rtol, maxiter, order, initial_step,
+                      step_factor, step_direction, preserve_shape, callback):
+    # Input validation for `_differentiate`
+
+    if not callable(func):
+        raise ValueError('`func` must be callable.')
+
+    # x has more complex IV that is taken care of during initialization
+    x = np.asarray(x)
+    dtype = x.dtype if np.issubdtype(x.dtype, np.inexact) else np.float64
+
+    if not np.iterable(args):
+        args = (args,)
+
+    if atol is None:
+        atol = np.finfo(dtype).tiny
+
+    if rtol is None:
+        rtol = np.sqrt(np.finfo(dtype).eps)
+
+    message = 'Tolerances and step parameters must be non-negative scalars.'
+    tols = np.asarray([atol, rtol, initial_step, step_factor])
+    if (not np.issubdtype(tols.dtype, np.number)
+            or np.any(tols < 0)
+            or tols.shape != (4,)):
+        raise ValueError(message)
+    initial_step, step_factor = tols[2:].astype(dtype)
+
+    maxiter_int = int(maxiter)
+    if maxiter != maxiter_int or maxiter <= 0:
+        raise ValueError('`maxiter` must be a positive integer.')
+
+    order_int = int(order)
+    if order_int != order or order <= 0:
+        raise ValueError('`order` must be a positive integer.')
+
+    step_direction = np.sign(step_direction).astype(dtype)
+    x, step_direction = np.broadcast_arrays(x, step_direction)
+    x, step_direction = x[()], step_direction[()]
+
+    message = '`preserve_shape` must be True or False.'
+    if preserve_shape not in {True, False}:
+        raise ValueError(message)
+
+    if callback is not None and not callable(callback):
+        raise ValueError('`callback` must be callable.')
+
+    return (func, x, args, atol, rtol, maxiter_int, order_int, initial_step,
+            step_factor, step_direction, preserve_shape, callback)
+
+
+def _differentiate(func, x, *, args=(), atol=None, rtol=None, maxiter=10,
+                   order=8, initial_step=0.5, step_factor=2.0,
+                   step_direction=0, preserve_shape=False, callback=None):
+    """Evaluate the derivative of an elementwise scalar function numerically.
+
+    Parameters
+    ----------
+    func : callable
+        The function whose derivative is desired. The signature must be::
+
+            func(x: ndarray, *fargs) -> ndarray
+
+         where each element of ``x`` is a finite real and ``fargs`` is a tuple,
+         which may contain an arbitrary number of arrays that are broadcastable
+         with `x`. ``func`` must be an elementwise function: each element
+         ``func(x)[i]`` must equal ``func(x[i])`` for all indices ``i``.
+    x : array_like
+        Abscissae at which to evaluate the derivative.
+    args : tuple, optional
+        Additional positional arguments to be passed to `func`. Must be arrays
+        broadcastable with `x`. If the callable to be differentiated requires
+        arguments that are not broadcastable with `x`, wrap that callable with
+        `func`. See Examples.
+    atol, rtol : float, optional
+        Absolute and relative tolerances for the stopping condition: iteration
+        will stop when ``res.error < atol + rtol * abs(res.df)``. The default
+        `atol` is the smallest normal number of the appropriate dtype, and
+        the default `rtol` is the square root of the precision of the
+        appropriate dtype.
+    order : int, default: 8
+        The (positive integer) order of the finite difference formula to be
+        used. Odd integers will be rounded up to the next even integer.
+    initial_step : float, default: 0.5
+        The (absolute) initial step size for the finite difference derivative
+        approximation.
+    step_factor : float, default: 2.0
+        The factor by which the step size is *reduced* in each iteration; i.e.
+        the step size in iteration 1 is ``initial_step/step_factor``. If
+        ``step_factor < 1``, subsequent steps will be greater than the initial
+        step; this may be useful if steps smaller than some threshold are
+        undesirable (e.g. due to subtractive cancellation error).
+    maxiter : int, default: 10
+        The maximum number of iterations of the algorithm to perform. See
+        notes.
+    step_direction : array_like
+        An array representing the direction of the finite difference steps (for
+        use when `x` lies near to the boundary of the domain of the function.)
+        Must be broadcastable with `x` and all `args`.
+        Where 0 (default), central differences are used; where negative (e.g.
+        -1), steps are non-positive; and where positive (e.g. 1), all steps are
+        non-negative.
+    preserve_shape : bool, default: False
+        In the following, "arguments of `func`" refers to the array ``x`` and
+        any arrays within ``fargs``. Let ``shape`` be the broadcasted shape
+        of `x` and all elements of `args` (which is conceptually
+        distinct from ``fargs`` passed into `f`).
+
+        - When ``preserve_shape=False`` (default), `f` must accept arguments
+          of *any* broadcastable shapes.
+
+        - When ``preserve_shape=True``, `f` must accept arguments of shape
+          ``shape`` *or* ``shape + (n,)``, where ``(n,)`` is the number of
+          abscissae at which the function is being evaluated.
+
+        In either case, for each scalar element ``xi`` within `x`, the array
+        returned by `f` must include the scalar ``f(xi)`` at the same index.
+        Consequently, the shape of the output is always the shape of the input
+        ``x``.
+
+        See Examples.
+    callback : callable, optional
+        An optional user-supplied function to be called before the first
+        iteration and after each iteration.
+        Called as ``callback(res)``, where ``res`` is a ``_RichResult``
+        similar to that returned by `_differentiate` (but containing the
+        current iterate's values of all variables). If `callback` raises a
+        ``StopIteration``, the algorithm will terminate immediately and
+        `_differentiate` will return a result.
+
+    Returns
+    -------
+    res : _RichResult
+        An instance of `scipy._lib._util._RichResult` with the following
+        attributes. (The descriptions are written as though the values will be
+        scalars; however, if `func` returns an array, the outputs will be
+        arrays of the same shape.)
+
+        success : bool
+            ``True`` when the algorithm terminated successfully (status ``0``).
+        status : int
+            An integer representing the exit status of the algorithm.
+            ``0`` : The algorithm converged to the specified tolerances.
+            ``-1`` : The error estimate increased, so iteration was terminated.
+            ``-2`` : The maximum number of iterations was reached.
+            ``-3`` : A non-finite value was encountered.
+            ``-4`` : Iteration was terminated by `callback`.
+            ``1`` : The algorithm is proceeding normally (in `callback` only).
+        df : float
+            The derivative of `func` at `x`, if the algorithm terminated
+            successfully.
+        error : float
+            An estimate of the error: the magnitude of the difference between
+            the current estimate of the derivative and the estimate in the
+            previous iteration.
+        nit : int
+            The number of iterations performed.
+        nfev : int
+            The number of points at which `func` was evaluated.
+        x : float
+            The value at which the derivative of `func` was evaluated
+            (after broadcasting with `args` and `step_direction`).
+
+    Notes
+    -----
+    The implementation was inspired by jacobi [1]_, numdifftools [2]_, and
+    DERIVEST [3]_, but the implementation follows the theory of Taylor series
+    more straightforwardly (and arguably naively so).
+    In the first iteration, the derivative is estimated using a finite
+    difference formula of order `order` with maximum step size `initial_step`.
+    Each subsequent iteration, the maximum step size is reduced by
+    `step_factor`, and the derivative is estimated again until a termination
+    condition is reached. The error estimate is the magnitude of the difference
+    between the current derivative approximation and that of the previous
+    iteration.
+
+    The stencils of the finite difference formulae are designed such that
+    abscissae are "nested": after `func` is evaluated at ``order + 1``
+    points in the first iteration, `func` is evaluated at only two new points
+    in each subsequent iteration; ``order - 1`` previously evaluated function
+    values required by the finite difference formula are reused, and two
+    function values (evaluations at the points furthest from `x`) are unused.
+
+    Step sizes are absolute. When the step size is small relative to the
+    magnitude of `x`, precision is lost; for example, if `x` is ``1e20``, the
+    default initial step size of ``0.5`` cannot be resolved. Accordingly,
+    consider using larger initial step sizes for large magnitudes of `x`.
+
+    The default tolerances are challenging to satisfy at points where the
+    true derivative is exactly zero. If the derivative may be exactly zero,
+    consider specifying an absolute tolerance (e.g. ``atol=1e-16``) to
+    improve convergence.
+
+    References
+    ----------
+    [1]_ Hans Dembinski (@HDembinski). jacobi.
+         https://github.com/HDembinski/jacobi
+    [2]_ Per A. Brodtkorb and John D'Errico. numdifftools.
+         https://numdifftools.readthedocs.io/en/latest/
+    [3]_ John D'Errico. DERIVEST: Adaptive Robust Numerical Differentiation.
+         https://www.mathworks.com/matlabcentral/fileexchange/13490-adaptive-robust-numerical-differentiation
+    [4]_ Numerical Differentition. Wikipedia.
+         https://en.wikipedia.org/wiki/Numerical_differentiation
+
+    Examples
+    --------
+    Evaluate the derivative of ``np.exp`` at several points ``x``.
+
+    >>> import numpy as np
+    >>> from scipy.optimize._differentiate import _differentiate
+    >>> f = np.exp
+    >>> df = np.exp  # true derivative
+    >>> x = np.linspace(1, 2, 5)
+    >>> res = _differentiate(f, x)
+    >>> res.df  # approximation of the derivative
+    array([2.71828183, 3.49034296, 4.48168907, 5.75460268, 7.3890561 ])
+    >>> res.error  # estimate of the error
+    array(
+        [7.12940817e-12, 9.16688947e-12, 1.17594823e-11, 1.50972568e-11, 1.93942640e-11]
+    )
+    >>> abs(res.df - df(x))  # true error
+    array(
+        [3.06421555e-14, 3.01980663e-14, 5.06261699e-14, 6.30606678e-14, 8.34887715e-14]
+    )
+
+    Show the convergence of the approximation as the step size is reduced.
+    Each iteration, the step size is reduced by `step_factor`, so for
+    sufficiently small initial step, each iteration reduces the error by a
+    factor of ``1/step_factor**order`` until finite precision arithmetic
+    inhibits further improvement.
+
+    >>> iter = list(range(1, 12))  # maximum iterations
+    >>> hfac = 2  # step size reduction per iteration
+    >>> hdir = [-1, 0, 1]  # compare left-, central-, and right- steps
+    >>> order = 4  # order of differentiation formula
+    >>> x = 1
+    >>> ref = df(x)
+    >>> errors = []  # true error
+    >>> for i in iter:
+    ...     res = _differentiate(f, x, maxiter=i, step_factor=hfac,
+    ...                          step_direction=hdir, order=order,
+    ...                          atol=0, rtol=0)  # prevent early termination
+    ...     errors.append(abs(res.df - ref))
+    >>> errors = np.array(errors)
+    >>> plt.semilogy(iter, errors[:, 0], label='left differences')
+    >>> plt.semilogy(iter, errors[:, 1], label='central differences')
+    >>> plt.semilogy(iter, errors[:, 2], label='right differences')
+    >>> plt.xlabel('iteration')
+    >>> plt.ylabel('error')
+    >>> plt.legend()
+    >>> plt.show()
+    >>> (errors[1, 1] / errors[0, 1], 1 / hfac**order)
+    (0.06215223140159822, 0.0625)
+
+    The implementation is vectorized over `x`, `step_direction`, and `args`.
+    The function is evaluated once before the first iteration to perform input
+    validation and standardization, and once per iteration thereafter.
+
+    >>> def f(x, p):
+    ...     print('here')
+    ...     f.nit += 1
+    ...     return x**p
+    >>> f.nit = 0
+    >>> def df(x, p):
+    ...     return p*x**(p-1)
+    >>> x = np.arange(1, 5)
+    >>> p = np.arange(1, 6).reshape((-1, 1))
+    >>> hdir = np.arange(-1, 2).reshape((-1, 1, 1))
+    >>> res = _differentiate(f, x, args=(p,), step_direction=hdir, maxiter=1)
+    >>> np.allclose(res.df, df(x, p))
+    True
+    >>> res.df.shape
+    (3, 5, 4)
+    >>> f.nit
+    2
+
+    By default, `preserve_shape` is False, and therefore the callable
+    `f` may be called with arrays of any broadcastable shapes.
+    For example:
+
+    >>> shapes = []
+    >>> def f(x, c):
+    ...    shape = np.broadcast_shapes(x.shape, c.shape)
+    ...    shapes.append(shape)
+    ...    return np.sin(c*x)
+    >>>
+    >>> c = [1, 5, 10, 20]
+    >>> res = _differentiate(f, 0, args=(c,))
+    >>> shapes
+    [(4,), (4, 8), (4, 2), (3, 2), (2, 2), (1, 2)]
+
+    To understand where these shapes are coming from - and to better
+    understand how `_differentiate` computes accurate results - note that
+    higher values of ``c`` correspond with higher frequency sinusoids.
+    The higher frequency sinusoids make the function's derivative change
+    faster, so more function evaluations are required to achieve the target
+    accuracy:
+
+    >>> res.nfev
+    array([11, 13, 15, 17])
+
+    The initial ``shape``, ``(4,)``, corresponds with evaluating the
+    function at a single abscissa and all four frequencies; this is used
+    for input validation and to determine the size and dtype of the arrays
+    that store results. The next shape corresponds with evaluating the
+    function at an initial grid of abscissae and all four frequencies.
+    Successive calls to the function evaluate the function at two more
+    abscissae, increasing the effective order of the approximation by two.
+    However, in later function evaluations, the function is evaluated at
+    fewer frequencies because the corresponding derivative has already
+    converged to the required tolerance. This saves function evaluations to
+    improve performance, but it requires the function to accept arguments of
+    any shape.
+
+    "Vector-valued" functions are unlikely to satisfy this requirement.
+    For example, consider
+
+    >>> def f(x):
+    ...    return [x, np.sin(3*x), x+np.sin(10*x), np.sin(20*x)*(x-1)**2]
+
+    This integrand is not compatible with `_differentiate` as written; for instance,
+    the shape of the output will not be the same as the shape of ``x``. Such a
+    function *could* be converted to a compatible form with the introduction of
+    additional parameters, but this would be inconvenient. In such cases,
+    a simpler solution would be to use `preserve_shape`.
+
+    >>> shapes = []
+    >>> def f(x):
+    ...     shapes.append(x.shape)
+    ...     x0, x1, x2, x3 = x
+    ...     return [x0, np.sin(3*x1), x2+np.sin(10*x2), np.sin(20*x3)*(x3-1)**2]
+    >>>
+    >>> x = np.zeros(4)
+    >>> res = _differentiate(f, x, preserve_shape=True)
+    >>> shapes
+    [(4,), (4, 8), (4, 2), (4, 2), (4, 2), (4, 2)]
+
+    Here, the shape of ``x`` is ``(4,)``. With ``preserve_shape=True``, the
+    function may be called with argument ``x`` of shape ``(4,)`` or ``(4, n)``,
+    and this is what we observe.
+
+    """
+    # TODO (followup):
+    #  - investigate behavior at saddle points
+    #  - array initial_step / step_factor?
+    #  - multivariate functions?
+
+    res = _differentiate_iv(func, x, args, atol, rtol, maxiter, order, initial_step,
+                            step_factor, step_direction, preserve_shape, callback)
+    (func, x, args, atol, rtol, maxiter, order,
+     h0, fac, hdir, preserve_shape, callback) = res
+
+    # Initialization
+    # Since f(x) (no step) is not needed for central differences, it may be
+    # possible to eliminate this function evaluation. However, it's useful for
+    # input validation and standardization, and everything else is designed to
+    # reduce function calls, so let's keep it simple.
+    temp = eim._initialize(func, (x,), args, preserve_shape=preserve_shape)
+    func, xs, fs, args, shape, dtype = temp
+    x, f = xs[0], fs[0]
+    df = np.full_like(f, np.nan)
+    # Ideally we'd broadcast the shape of `hdir` in `_elementwise_algo_init`, but
+    # it's simpler to do it here than to generalize `_elementwise_algo_init` further.
+    # `hdir` and `x` are already broadcasted in `_differentiate_iv`, so we know
+    # that `hdir` can be broadcasted to the final shape.
+    hdir = np.broadcast_to(hdir, shape).flatten()
+
+    status = np.full_like(x, eim._EINPROGRESS, dtype=int)  # in progress
+    nit, nfev = 0, 1  # one function evaluations performed above
+    # Boolean indices of left, central, right, and (all) one-sided steps
+    il = hdir < 0
+    ic = hdir == 0
+    ir = hdir > 0
+    io = il | ir
+
+    # Most of these attributes are reasonably obvious, but:
+    # - `fs` holds all the function values of all active `x`. The zeroth
+    #   axis corresponds with active points `x`, the first axis corresponds
+    #   with the different steps (in the order described in
+    #   `_differentiate_weights`).
+    # - `terms` (which could probably use a better name) is half the `order`,
+    #   which is always even.
+    work = _RichResult(x=x, df=df, fs=f[:, np.newaxis], error=np.nan, h=h0,
+                       df_last=np.nan, error_last=np.nan, h0=h0, fac=fac,
+                       atol=atol, rtol=rtol, nit=nit, nfev=nfev,
+                       status=status, dtype=dtype, terms=(order+1)//2,
+                       hdir=hdir, il=il, ic=ic, ir=ir, io=io)
+    # This is the correspondence between terms in the `work` object and the
+    # final result. In this case, the mapping is trivial. Note that `success`
+    # is prepended automatically.
+    res_work_pairs = [('status', 'status'), ('df', 'df'), ('error', 'error'),
+                      ('nit', 'nit'), ('nfev', 'nfev'), ('x', 'x')]
+
+    def pre_func_eval(work):
+        """Determine the abscissae at which the function needs to be evaluated.
+
+        See `_differentiate_weights` for a description of the stencil (pattern
+        of the abscissae).
+
+        In the first iteration, there is only one stored function value in
+        `work.fs`, `f(x)`, so we need to evaluate at `order` new points. In
+        subsequent iterations, we evaluate at two new points. Note that
+        `work.x` is always flattened into a 1D array after broadcasting with
+        all `args`, so we add a new axis at the end and evaluate all point
+        in one call to the function.
+
+        For improvement:
+        - Consider measuring the step size actually taken, since `(x + h) - x`
+          is not identically equal to `h` with floating point arithmetic.
+        - Adjust the step size automatically if `x` is too big to resolve the
+          step.
+        - We could probably save some work if there are no central difference
+          steps or no one-sided steps.
+        """
+        n = work.terms  # half the order
+        h = work.h  # step size
+        c = work.fac  # step reduction factor
+        d = c**0.5  # square root of step reduction factor (one-sided stencil)
+        # Note - no need to be careful about dtypes until we allocate `x_eval`
+
+        if work.nit == 0:
+            hc = h / c**np.arange(n)
+            hc = np.concatenate((-hc[::-1], hc))
+        else:
+            hc = np.asarray([-h, h]) / c**(n-1)
+
+        if work.nit == 0:
+            hr = h / d**np.arange(2*n)
+        else:
+            hr = np.asarray([h, h/d]) / c**(n-1)
+
+        n_new = 2*n if work.nit == 0 else 2  # number of new abscissae
+        x_eval = np.zeros((len(work.hdir), n_new), dtype=work.dtype)
+        il, ic, ir = work.il, work.ic, work.ir
+        x_eval[ir] = work.x[ir, np.newaxis] + hr
+        x_eval[ic] = work.x[ic, np.newaxis] + hc
+        x_eval[il] = work.x[il, np.newaxis] - hr
+        return x_eval
+
+    def post_func_eval(x, f, work):
+        """ Estimate the derivative and error from the function evaluations
+
+        As in `pre_func_eval`: in the first iteration, there is only one stored
+        function value in `work.fs`, `f(x)`, so we need to add the `order` new
+        points. In subsequent iterations, we add two new points. The tricky
+        part is getting the order to match that of the weights, which is
+        described in `_differentiate_weights`.
+
+        For improvement:
+        - Change the order of the weights (and steps in `pre_func_eval`) to
+          simplify `work_fc` concatenation and eliminate `fc` concatenation.
+        - It would be simple to do one-step Richardson extrapolation with `df`
+          and `df_last` to increase the order of the estimate and/or improve
+          the error estimate.
+        - Process the function evaluations in a more numerically favorable
+          way. For instance, combining the pairs of central difference evals
+          into a second-order approximation and using Richardson extrapolation
+          to produce a higher order approximation seemed to retain accuracy up
+          to very high order.
+        - Alternatively, we could use `polyfit` like Jacobi. An advantage of
+          fitting polynomial to more points than necessary is improved noise
+          tolerance.
+        """
+        n = work.terms
+        n_new = n if work.nit == 0 else 1
+        il, ic, io = work.il, work.ic, work.io
+
+        # Central difference
+        # `work_fc` is *all* the points at which the function has been evaluated
+        # `fc` is the points we're using *this iteration* to produce the estimate
+        work_fc = (f[ic, :n_new], work.fs[ic, :], f[ic, -n_new:])
+        work_fc = np.concatenate(work_fc, axis=-1)
+        if work.nit == 0:
+            fc = work_fc
+        else:
+            fc = (work_fc[:, :n], work_fc[:, n:n+1], work_fc[:, -n:])
+            fc = np.concatenate(fc, axis=-1)
+
+        # One-sided difference
+        work_fo = np.concatenate((work.fs[io, :], f[io, :]), axis=-1)
+        if work.nit == 0:
+            fo = work_fo
+        else:
+            fo = np.concatenate((work_fo[:, 0:1], work_fo[:, -2*n:]), axis=-1)
+
+        work.fs = np.zeros((len(ic), work.fs.shape[-1] + 2*n_new))
+        work.fs[ic] = work_fc
+        work.fs[io] = work_fo
+
+        wc, wo = _differentiate_weights(work, n)
+        work.df_last = work.df.copy()
+        work.df[ic] = fc @ wc / work.h
+        work.df[io] = fo @ wo / work.h
+        work.df[il] *= -1
+
+        work.h /= work.fac
+        work.error_last = work.error
+        # Simple error estimate - the difference in derivative estimates between
+        # this iteration and the last. This is typically conservative because if
+        # convergence has begin, the true error is much closer to the difference
+        # between the current estimate and the *next* error estimate. However,
+        # we could use Richarson extrapolation to produce an error estimate that
+        # is one order higher, and take the difference between that and
+        # `work.df` (which would just be constant factor that depends on `fac`.)
+        work.error = abs(work.df - work.df_last)
+
+    def check_termination(work):
+        """Terminate due to convergence, non-finite values, or error increase"""
+        stop = np.zeros_like(work.df).astype(bool)
+
+        i = work.error < work.atol + work.rtol*abs(work.df)
+        work.status[i] = eim._ECONVERGED
+        stop[i] = True
+
+        if work.nit > 0:
+            i = ~((np.isfinite(work.x) & np.isfinite(work.df)) | stop)
+            work.df[i], work.status[i] = np.nan, eim._EVALUEERR
+            stop[i] = True
+
+        # With infinite precision, there is a step size below which
+        # all smaller step sizes will reduce the error. But in floating point
+        # arithmetic, catastrophic cancellation will begin to cause the error
+        # to increase again. This heuristic tries to avoid step sizes that are
+        # too small. There may be more theoretically sound approaches for
+        # detecting a step size that minimizes the total error, but this
+        # heuristic seems simple and effective.
+        i = (work.error > work.error_last*10) & ~stop
+        work.status[i] = _EERRORINCREASE
+        stop[i] = True
+
+        return stop
+
+    def post_termination_check(work):
+        return
+
+    def customize_result(res, shape):
+        return shape
+
+    return eim._loop(work, callback, shape, maxiter, func, args, dtype,
+                     pre_func_eval, post_func_eval, check_termination,
+                     post_termination_check, customize_result, res_work_pairs,
+                     preserve_shape)
+
+
+def _differentiate_weights(work, n):
+    # This produces the weights of the finite difference formula for a given
+    # stencil. In experiments, use of a second-order central difference formula
+    # with Richardson extrapolation was more accurate numerically, but it was
+    # more complicated, and it would have become even more complicated when
+    # adding support for one-sided differences. However, now that all the
+    # function evaluation values are stored, they can be processed in whatever
+    # way is desired to produce the derivative estimate. We leave alternative
+    # approaches to future work. To be more self-contained, here is the theory
+    # for deriving the weights below.
+    #
+    # Recall that the Taylor expansion of a univariate, scalar-values function
+    # about a point `x` may be expressed as:
+    #      f(x + h)  =     f(x) + f'(x)*h + f''(x)/2!*h**2  + O(h**3)
+    # Suppose we evaluate f(x), f(x+h), and f(x-h).  We have:
+    #      f(x)      =     f(x)
+    #      f(x + h)  =     f(x) + f'(x)*h + f''(x)/2!*h**2  + O(h**3)
+    #      f(x - h)  =     f(x) - f'(x)*h + f''(x)/2!*h**2  + O(h**3)
+    # We can solve for weights `wi` such that:
+    #   w1*f(x)      = w1*(f(x))
+    # + w2*f(x + h)  = w2*(f(x) + f'(x)*h + f''(x)/2!*h**2) + O(h**3)
+    # + w3*f(x - h)  = w3*(f(x) - f'(x)*h + f''(x)/2!*h**2) + O(h**3)
+    #                =     0    + f'(x)*h + 0               + O(h**3)
+    # Then
+    #     f'(x) ~ (w1*f(x) + w2*f(x+h) + w3*f(x-h))/h
+    # is a finite difference derivative approximation with error O(h**2),
+    # and so it is said to be a "second-order" approximation. Under certain
+    # conditions (e.g. well-behaved function, `h` sufficiently small), the
+    # error in the approximation will decrease with h**2; that is, if `h` is
+    # reduced by a factor of 2, the error is reduced by a factor of 4.
+    #
+    # By default, we use eighth-order formulae. Our central-difference formula
+    # uses abscissae:
+    #   x-h/c**3, x-h/c**2, x-h/c, x-h, x, x+h, x+h/c, x+h/c**2, x+h/c**3
+    # where `c` is the step factor. (Typically, the step factor is greater than
+    # one, so the outermost points - as written above - are actually closest to
+    # `x`.) This "stencil" is chosen so that each iteration, the step can be
+    # reduced by the factor `c`, and most of the function evaluations can be
+    # reused with the new step size. For example, in the next iteration, we
+    # will have:
+    #   x-h/c**4, x-h/c**3, x-h/c**2, x-h/c, x, x+h/c, x+h/c**2, x+h/c**3, x+h/c**4
+    # We do not reuse `x-h` and `x+h` for the new derivative estimate.
+    # While this would increase the order of the formula and thus the
+    # theoretical convergence rate, it is also less stable numerically.
+    # (As noted above, there are other ways of processing the values that are
+    # more stable. Thus, even now we store `f(x-h)` and `f(x+h)` in `work.fs`
+    # to simplify future development of this sort of improvement.)
+    #
+    # The (right) one-sided formula is produced similarly using abscissae
+    #   x, x+h, x+h/d, x+h/d**2, ..., x+h/d**6, x+h/d**7, x+h/d**7
+    # where `d` is the square root of `c`. (The left one-sided formula simply
+    # uses -h.) When the step size is reduced by factor `c = d**2`, we have
+    # abscissae:
+    #   x, x+h/d**2, x+h/d**3..., x+h/d**8, x+h/d**9, x+h/d**9
+    # `d` is chosen as the square root of `c` so that the rate of the step-size
+    # reduction is the same per iteration as in the central difference case.
+    # Note that because the central difference formulas are inherently of even
+    # order, for simplicity, we use only even-order formulas for one-sided
+    # differences, too.
+
+    # It's possible for the user to specify `fac` in, say, double precision but
+    # `x` and `args` in single precision. `fac` gets converted to single
+    # precision, but we should always use double precision for the intermediate
+    # calculations here to avoid additional error in the weights.
+    fac = work.fac.astype(np.float64)
+
+    # Note that if the user switches back to floating point precision with
+    # `x` and `args`, then `fac` will not necessarily equal the (lower
+    # precision) cached `_differentiate_weights.fac`, and the weights will
+    # need to be recalculated. This could be fixed, but it's late, and of
+    # low consequence.
+    if fac != _differentiate_weights.fac:
+        _differentiate_weights.central = []
+        _differentiate_weights.right = []
+        _differentiate_weights.fac = fac
+
+    if len(_differentiate_weights.central) != 2*n + 1:
+        # Central difference weights. Consider refactoring this; it could
+        # probably be more compact.
+        i = np.arange(-n, n + 1)
+        p = np.abs(i) - 1.  # center point has power `p` -1, but sign `s` is 0
+        s = np.sign(i)
+
+        h = s / fac ** p
+        A = np.vander(h, increasing=True).T
+        b = np.zeros(2*n + 1)
+        b[1] = 1
+        weights = np.linalg.solve(A, b)
+
+        # Enforce identities to improve accuracy
+        weights[n] = 0
+        for i in range(n):
+            weights[-i-1] = -weights[i]
+
+        # Cache the weights. We only need to calculate them once unless
+        # the step factor changes.
+        _differentiate_weights.central = weights
+
+        # One-sided difference weights. The left one-sided weights (with
+        # negative steps) are simply the negative of the right one-sided
+        # weights, so no need to compute them separately.
+        i = np.arange(2*n + 1)
+        p = i - 1.
+        s = np.sign(i)
+
+        h = s / np.sqrt(fac) ** p
+        A = np.vander(h, increasing=True).T
+        b = np.zeros(2 * n + 1)
+        b[1] = 1
+        weights = np.linalg.solve(A, b)
+
+        _differentiate_weights.right = weights
+
+    return (_differentiate_weights.central.astype(work.dtype, copy=False),
+            _differentiate_weights.right.astype(work.dtype, copy=False))
+_differentiate_weights.central = []
+_differentiate_weights.right = []
+_differentiate_weights.fac = None

env-llmeval/lib/python3.10/site-packages/scipy/optimize/_direct_py.py

@@ -0,0 +1,278 @@
+from __future__ import annotations
+from typing import (  # noqa: UP035
+    Any, Callable, Iterable, TYPE_CHECKING
+)
+
+import numpy as np
+from scipy.optimize import OptimizeResult
+from ._constraints import old_bound_to_new, Bounds
+from ._direct import direct as _direct  # type: ignore
+
+if TYPE_CHECKING:
+    import numpy.typing as npt
+
+__all__ = ['direct']
+
+ERROR_MESSAGES = (
+    "Number of function evaluations done is larger than maxfun={}",
+    "Number of iterations is larger than maxiter={}",
+    "u[i] < l[i] for some i",
+    "maxfun is too large",
+    "Initialization failed",
+    "There was an error in the creation of the sample points",
+    "An error occurred while the function was sampled",
+    "Maximum number of levels has been reached.",
+    "Forced stop",
+    "Invalid arguments",
+    "Out of memory",
+)
+
+SUCCESS_MESSAGES = (
+    ("The best function value found is within a relative error={} "
+     "of the (known) global optimum f_min"),
+    ("The volume of the hyperrectangle containing the lowest function value "
+     "found is below vol_tol={}"),
+    ("The side length measure of the hyperrectangle containing the lowest "
+     "function value found is below len_tol={}"),
+)
+
+
+def direct(
+    func: Callable[[npt.ArrayLike, tuple[Any]], float],
+    bounds: Iterable | Bounds,
+    *,
+    args: tuple = (),
+    eps: float = 1e-4,
+    maxfun: int | None = None,
+    maxiter: int = 1000,
+    locally_biased: bool = True,
+    f_min: float = -np.inf,
+    f_min_rtol: float = 1e-4,
+    vol_tol: float = 1e-16,
+    len_tol: float = 1e-6,
+    callback: Callable[[npt.ArrayLike], None] | None = None
+) -> OptimizeResult:
+    """
+    Finds the global minimum of a function using the
+    DIRECT algorithm.
+
+    Parameters
+    ----------
+    func : callable
+        The objective function to be minimized.
+        ``func(x, *args) -> float``
+        where ``x`` is an 1-D array with shape (n,) and ``args`` is a tuple of
+        the fixed parameters needed to completely specify the function.
+    bounds : sequence or `Bounds`
+        Bounds for variables. There are two ways to specify the bounds:
+
+        1. Instance of `Bounds` class.
+        2. ``(min, max)`` pairs for each element in ``x``.
+
+    args : tuple, optional
+        Any additional fixed parameters needed to
+        completely specify the objective function.
+    eps : float, optional
+        Minimal required difference of the objective function values
+        between the current best hyperrectangle and the next potentially
+        optimal hyperrectangle to be divided. In consequence, `eps` serves as a
+        tradeoff between local and global search: the smaller, the more local
+        the search becomes. Default is 1e-4.
+    maxfun : int or None, optional
+        Approximate upper bound on objective function evaluations.
+        If `None`, will be automatically set to ``1000 * N`` where ``N``
+        represents the number of dimensions. Will be capped if necessary to
+        limit DIRECT's RAM usage to app. 1GiB. This will only occur for very
+        high dimensional problems and excessive `max_fun`. Default is `None`.
+    maxiter : int, optional
+        Maximum number of iterations. Default is 1000.
+    locally_biased : bool, optional
+        If `True` (default), use the locally biased variant of the
+        algorithm known as DIRECT_L. If `False`, use the original unbiased
+        DIRECT algorithm. For hard problems with many local minima,
+        `False` is recommended.
+    f_min : float, optional
+        Function value of the global optimum. Set this value only if the
+        global optimum is known. Default is ``-np.inf``, so that this
+        termination criterion is deactivated.
+    f_min_rtol : float, optional
+        Terminate the optimization once the relative error between the
+        current best minimum `f` and the supplied global minimum `f_min`
+        is smaller than `f_min_rtol`. This parameter is only used if
+        `f_min` is also set. Must lie between 0 and 1. Default is 1e-4.
+    vol_tol : float, optional
+        Terminate the optimization once the volume of the hyperrectangle
+        containing the lowest function value is smaller than `vol_tol`
+        of the complete search space. Must lie between 0 and 1.
+        Default is 1e-16.
+    len_tol : float, optional
+        If `locally_biased=True`, terminate the optimization once half of
+        the normalized maximal side length of the hyperrectangle containing
+        the lowest function value is smaller than `len_tol`.
+        If `locally_biased=False`, terminate the optimization once half of
+        the normalized diagonal of the hyperrectangle containing the lowest
+        function value is smaller than `len_tol`. Must lie between 0 and 1.
+        Default is 1e-6.
+    callback : callable, optional
+        A callback function with signature ``callback(xk)`` where ``xk``
+        represents the best function value found so far.
+
+    Returns
+    -------
+    res : OptimizeResult
+        The optimization result represented as a ``OptimizeResult`` object.
+        Important attributes are: ``x`` the solution array, ``success`` a
+        Boolean flag indicating if the optimizer exited successfully and
+        ``message`` which describes the cause of the termination. See
+        `OptimizeResult` for a description of other attributes.
+
+    Notes
+    -----
+    DIviding RECTangles (DIRECT) is a deterministic global
+    optimization algorithm capable of minimizing a black box function with
+    its variables subject to lower and upper bound constraints by sampling
+    potential solutions in the search space [1]_. The algorithm starts by
+    normalising the search space to an n-dimensional unit hypercube.
+    It samples the function at the center of this hypercube and at 2n
+    (n is the number of variables) more points, 2 in each coordinate
+    direction. Using these function values, DIRECT then divides the
+    domain into hyperrectangles, each having exactly one of the sampling
+    points as its center. In each iteration, DIRECT chooses, using the `eps`
+    parameter which defaults to 1e-4, some of the existing hyperrectangles
+    to be further divided. This division process continues until either the
+    maximum number of iterations or maximum function evaluations allowed
+    are exceeded, or the hyperrectangle containing the minimal value found
+    so far becomes small enough. If `f_min` is specified, the optimization
+    will stop once this function value is reached within a relative tolerance.
+    The locally biased variant of DIRECT (originally called DIRECT_L) [2]_ is
+    used by default. It makes the search more locally biased and more
+    efficient for cases with only a few local minima.
+
+    A note about termination criteria: `vol_tol` refers to the volume of the
+    hyperrectangle containing the lowest function value found so far. This
+    volume decreases exponentially with increasing dimensionality of the
+    problem. Therefore `vol_tol` should be decreased to avoid premature
+    termination of the algorithm for higher dimensions. This does not hold
+    for `len_tol`: it refers either to half of the maximal side length
+    (for ``locally_biased=True``) or half of the diagonal of the
+    hyperrectangle (for ``locally_biased=False``).
+
+    This code is based on the DIRECT 2.0.4 Fortran code by Gablonsky et al. at
+    https://ctk.math.ncsu.edu/SOFTWARE/DIRECTv204.tar.gz .
+    This original version was initially converted via f2c and then cleaned up
+    and reorganized by Steven G. Johnson, August 2007, for the NLopt project.
+    The `direct` function wraps the C implementation.
+
+    .. versionadded:: 1.9.0
+
+    References
+    ----------
+    .. [1] Jones, D.R., Perttunen, C.D. & Stuckman, B.E. Lipschitzian
+        optimization without the Lipschitz constant. J Optim Theory Appl
+        79, 157-181 (1993).
+    .. [2] Gablonsky, J., Kelley, C. A Locally-Biased form of the DIRECT
+        Algorithm. Journal of Global Optimization 21, 27-37 (2001).
+
+    Examples
+    --------
+    The following example is a 2-D problem with four local minima: minimizing
+    the Styblinski-Tang function
+    (https://en.wikipedia.org/wiki/Test_functions_for_optimization).
+
+    >>> from scipy.optimize import direct, Bounds
+    >>> def styblinski_tang(pos):
+    ...     x, y = pos
+    ...     return 0.5 * (x**4 - 16*x**2 + 5*x + y**4 - 16*y**2 + 5*y)
+    >>> bounds = Bounds([-4., -4.], [4., 4.])
+    >>> result = direct(styblinski_tang, bounds)
+    >>> result.x, result.fun, result.nfev
+    array([-2.90321597, -2.90321597]), -78.3323279095383, 2011
+
+    The correct global minimum was found but with a huge number of function
+    evaluations (2011). Loosening the termination tolerances `vol_tol` and
+    `len_tol` can be used to stop DIRECT earlier.
+
+    >>> result = direct(styblinski_tang, bounds, len_tol=1e-3)
+    >>> result.x, result.fun, result.nfev
+    array([-2.9044353, -2.9044353]), -78.33230330754142, 207
+
+    """
+    # convert bounds to new Bounds class if necessary
+    if not isinstance(bounds, Bounds):
+        if isinstance(bounds, list) or isinstance(bounds, tuple):
+            lb, ub = old_bound_to_new(bounds)
+            bounds = Bounds(lb, ub)
+        else:
+            message = ("bounds must be a sequence or "
+                       "instance of Bounds class")
+            raise ValueError(message)
+
+    lb = np.ascontiguousarray(bounds.lb, dtype=np.float64)
+    ub = np.ascontiguousarray(bounds.ub, dtype=np.float64)
+
+    # validate bounds
+    # check that lower bounds are smaller than upper bounds
+    if not np.all(lb < ub):
+        raise ValueError('Bounds are not consistent min < max')
+    # check for infs
+    if (np.any(np.isinf(lb)) or np.any(np.isinf(ub))):
+        raise ValueError("Bounds must not be inf.")
+
+    # validate tolerances
+    if (vol_tol < 0 or vol_tol > 1):
+        raise ValueError("vol_tol must be between 0 and 1.")
+    if (len_tol < 0 or len_tol > 1):
+        raise ValueError("len_tol must be between 0 and 1.")
+    if (f_min_rtol < 0 or f_min_rtol > 1):
+        raise ValueError("f_min_rtol must be between 0 and 1.")
+
+    # validate maxfun and maxiter
+    if maxfun is None:
+        maxfun = 1000 * lb.shape[0]
+    if not isinstance(maxfun, int):
+        raise ValueError("maxfun must be of type int.")
+    if maxfun < 0:
+        raise ValueError("maxfun must be > 0.")
+    if not isinstance(maxiter, int):
+        raise ValueError("maxiter must be of type int.")
+    if maxiter < 0:
+        raise ValueError("maxiter must be > 0.")
+
+    # validate boolean parameters
+    if not isinstance(locally_biased, bool):
+        raise ValueError("locally_biased must be True or False.")
+
+    def _func_wrap(x, args=None):
+        x = np.asarray(x)
+        if args is None:
+            f = func(x)
+        else:
+            f = func(x, *args)
+        # always return a float
+        return np.asarray(f).item()
+
+    # TODO: fix disp argument
+    x, fun, ret_code, nfev, nit = _direct(
+        _func_wrap,
+        np.asarray(lb), np.asarray(ub),
+        args,
+        False, eps, maxfun, maxiter,
+        locally_biased,
+        f_min, f_min_rtol,
+        vol_tol, len_tol, callback
+    )
+
+    format_val = (maxfun, maxiter, f_min_rtol, vol_tol, len_tol)
+    if ret_code > 2:
+        message = SUCCESS_MESSAGES[ret_code - 3].format(
+                    format_val[ret_code - 1])
+    elif 0 < ret_code <= 2:
+        message = ERROR_MESSAGES[ret_code - 1].format(format_val[ret_code - 1])
+    elif 0 > ret_code > -100:
+        message = ERROR_MESSAGES[abs(ret_code) + 1]
+    else:
+        message = ERROR_MESSAGES[ret_code + 99]
+
+    return OptimizeResult(x=np.asarray(x), fun=fun, status=ret_code,
+                          success=ret_code > 2, message=message,
+                          nfev=nfev, nit=nit)

env-llmeval/lib/python3.10/site-packages/scipy/optimize/_dual_annealing.py

@@ -0,0 +1,715 @@
+# Dual Annealing implementation.
+# Copyright (c) 2018 Sylvain Gubian <[email protected]>,
+# Yang Xiang <[email protected]>
+# Author: Sylvain Gubian, Yang Xiang, PMP S.A.
+
+"""
+A Dual Annealing global optimization algorithm
+"""
+
+import numpy as np
+from scipy.optimize import OptimizeResult
+from scipy.optimize import minimize, Bounds
+from scipy.special import gammaln
+from scipy._lib._util import check_random_state
+from scipy.optimize._constraints import new_bounds_to_old
+
+__all__ = ['dual_annealing']
+
+
+class VisitingDistribution:
+    """
+    Class used to generate new coordinates based on the distorted
+    Cauchy-Lorentz distribution. Depending on the steps within the strategy
+    chain, the class implements the strategy for generating new location
+    changes.
+
+    Parameters
+    ----------
+    lb : array_like
+        A 1-D NumPy ndarray containing lower bounds of the generated
+        components. Neither NaN or inf are allowed.
+    ub : array_like
+        A 1-D NumPy ndarray containing upper bounds for the generated
+        components. Neither NaN or inf are allowed.
+    visiting_param : float
+        Parameter for visiting distribution. Default value is 2.62.
+        Higher values give the visiting distribution a heavier tail, this
+        makes the algorithm jump to a more distant region.
+        The value range is (1, 3]. Its value is fixed for the life of the
+        object.
+    rand_gen : {`~numpy.random.RandomState`, `~numpy.random.Generator`}
+        A `~numpy.random.RandomState`, `~numpy.random.Generator` object
+        for using the current state of the created random generator container.
+
+    """
+    TAIL_LIMIT = 1.e8
+    MIN_VISIT_BOUND = 1.e-10
+
+    def __init__(self, lb, ub, visiting_param, rand_gen):
+        # if you wish to make _visiting_param adjustable during the life of
+        # the object then _factor2, _factor3, _factor5, _d1, _factor6 will
+        # have to be dynamically calculated in `visit_fn`. They're factored
+        # out here so they don't need to be recalculated all the time.
+        self._visiting_param = visiting_param
+        self.rand_gen = rand_gen
+        self.lower = lb
+        self.upper = ub
+        self.bound_range = ub - lb
+
+        # these are invariant numbers unless visiting_param changes
+        self._factor2 = np.exp((4.0 - self._visiting_param) * np.log(
+            self._visiting_param - 1.0))
+        self._factor3 = np.exp((2.0 - self._visiting_param) * np.log(2.0)
+                               / (self._visiting_param - 1.0))
+        self._factor4_p = np.sqrt(np.pi) * self._factor2 / (self._factor3 * (
+            3.0 - self._visiting_param))
+
+        self._factor5 = 1.0 / (self._visiting_param - 1.0) - 0.5
+        self._d1 = 2.0 - self._factor5
+        self._factor6 = np.pi * (1.0 - self._factor5) / np.sin(
+            np.pi * (1.0 - self._factor5)) / np.exp(gammaln(self._d1))
+
+    def visiting(self, x, step, temperature):
+        """ Based on the step in the strategy chain, new coordinates are
+        generated by changing all components is the same time or only
+        one of them, the new values are computed with visit_fn method
+        """
+        dim = x.size
+        if step < dim:
+            # Changing all coordinates with a new visiting value
+            visits = self.visit_fn(temperature, dim)
+            upper_sample, lower_sample = self.rand_gen.uniform(size=2)
+            visits[visits > self.TAIL_LIMIT] = self.TAIL_LIMIT * upper_sample
+            visits[visits < -self.TAIL_LIMIT] = -self.TAIL_LIMIT * lower_sample
+            x_visit = visits + x
+            a = x_visit - self.lower
+            b = np.fmod(a, self.bound_range) + self.bound_range
+            x_visit = np.fmod(b, self.bound_range) + self.lower
+            x_visit[np.fabs(
+                x_visit - self.lower) < self.MIN_VISIT_BOUND] += 1.e-10
+        else:
+            # Changing only one coordinate at a time based on strategy
+            # chain step
+            x_visit = np.copy(x)
+            visit = self.visit_fn(temperature, 1)[0]
+            if visit > self.TAIL_LIMIT:
+                visit = self.TAIL_LIMIT * self.rand_gen.uniform()
+            elif visit < -self.TAIL_LIMIT:
+                visit = -self.TAIL_LIMIT * self.rand_gen.uniform()
+            index = step - dim
+            x_visit[index] = visit + x[index]
+            a = x_visit[index] - self.lower[index]
+            b = np.fmod(a, self.bound_range[index]) + self.bound_range[index]
+            x_visit[index] = np.fmod(b, self.bound_range[
+                index]) + self.lower[index]
+            if np.fabs(x_visit[index] - self.lower[
+                    index]) < self.MIN_VISIT_BOUND:
+                x_visit[index] += self.MIN_VISIT_BOUND
+        return x_visit
+
+    def visit_fn(self, temperature, dim):
+        """ Formula Visita from p. 405 of reference [2] """
+        x, y = self.rand_gen.normal(size=(dim, 2)).T
+
+        factor1 = np.exp(np.log(temperature) / (self._visiting_param - 1.0))
+        factor4 = self._factor4_p * factor1
+
+        # sigmax
+        x *= np.exp(-(self._visiting_param - 1.0) * np.log(
+            self._factor6 / factor4) / (3.0 - self._visiting_param))
+
+        den = np.exp((self._visiting_param - 1.0) * np.log(np.fabs(y)) /
+                     (3.0 - self._visiting_param))
+
+        return x / den
+
+
+class EnergyState:
+    """
+    Class used to record the energy state. At any time, it knows what is the
+    currently used coordinates and the most recent best location.
+
+    Parameters
+    ----------
+    lower : array_like
+        A 1-D NumPy ndarray containing lower bounds for generating an initial
+        random components in the `reset` method.
+    upper : array_like
+        A 1-D NumPy ndarray containing upper bounds for generating an initial
+        random components in the `reset` method
+        components. Neither NaN or inf are allowed.
+    callback : callable, ``callback(x, f, context)``, optional
+        A callback function which will be called for all minima found.
+        ``x`` and ``f`` are the coordinates and function value of the
+        latest minimum found, and `context` has value in [0, 1, 2]
+    """
+    # Maximum number of trials for generating a valid starting point
+    MAX_REINIT_COUNT = 1000
+
+    def __init__(self, lower, upper, callback=None):
+        self.ebest = None
+        self.current_energy = None
+        self.current_location = None
+        self.xbest = None
+        self.lower = lower
+        self.upper = upper
+        self.callback = callback
+
+    def reset(self, func_wrapper, rand_gen, x0=None):
+        """
+        Initialize current location is the search domain. If `x0` is not
+        provided, a random location within the bounds is generated.
+        """
+        if x0 is None:
+            self.current_location = rand_gen.uniform(self.lower, self.upper,
+                                                     size=len(self.lower))
+        else:
+            self.current_location = np.copy(x0)
+        init_error = True
+        reinit_counter = 0
+        while init_error:
+            self.current_energy = func_wrapper.fun(self.current_location)
+            if self.current_energy is None:
+                raise ValueError('Objective function is returning None')
+            if (not np.isfinite(self.current_energy) or np.isnan(
+                    self.current_energy)):
+                if reinit_counter >= EnergyState.MAX_REINIT_COUNT:
+                    init_error = False
+                    message = (
+                        'Stopping algorithm because function '
+                        'create NaN or (+/-) infinity values even with '
+                        'trying new random parameters'
+                    )
+                    raise ValueError(message)
+                self.current_location = rand_gen.uniform(self.lower,
+                                                         self.upper,
+                                                         size=self.lower.size)
+                reinit_counter += 1
+            else:
+                init_error = False
+            # If first time reset, initialize ebest and xbest
+            if self.ebest is None and self.xbest is None:
+                self.ebest = self.current_energy
+                self.xbest = np.copy(self.current_location)
+            # Otherwise, we keep them in case of reannealing reset
+
+    def update_best(self, e, x, context):
+        self.ebest = e
+        self.xbest = np.copy(x)
+        if self.callback is not None:
+            val = self.callback(x, e, context)
+            if val is not None:
+                if val:
+                    return ('Callback function requested to stop early by '
+                           'returning True')
+
+    def update_current(self, e, x):
+        self.current_energy = e
+        self.current_location = np.copy(x)
+
+
+class StrategyChain:
+    """
+    Class that implements within a Markov chain the strategy for location
+    acceptance and local search decision making.
+
+    Parameters
+    ----------
+    acceptance_param : float
+        Parameter for acceptance distribution. It is used to control the
+        probability of acceptance. The lower the acceptance parameter, the
+        smaller the probability of acceptance. Default value is -5.0 with
+        a range (-1e4, -5].
+    visit_dist : VisitingDistribution
+        Instance of `VisitingDistribution` class.
+    func_wrapper : ObjectiveFunWrapper
+        Instance of `ObjectiveFunWrapper` class.
+    minimizer_wrapper: LocalSearchWrapper
+        Instance of `LocalSearchWrapper` class.
+    rand_gen : {None, int, `numpy.random.Generator`,
+                `numpy.random.RandomState`}, optional
+
+        If `seed` is None (or `np.random`), the `numpy.random.RandomState`
+        singleton is used.
+        If `seed` is an int, a new ``RandomState`` instance is used,
+        seeded with `seed`.
+        If `seed` is already a ``Generator`` or ``RandomState`` instance then
+        that instance is used.
+    energy_state: EnergyState
+        Instance of `EnergyState` class.
+
+    """
+
+    def __init__(self, acceptance_param, visit_dist, func_wrapper,
+                 minimizer_wrapper, rand_gen, energy_state):
+        # Local strategy chain minimum energy and location
+        self.emin = energy_state.current_energy
+        self.xmin = np.array(energy_state.current_location)
+        # Global optimizer state
+        self.energy_state = energy_state
+        # Acceptance parameter
+        self.acceptance_param = acceptance_param
+        # Visiting distribution instance
+        self.visit_dist = visit_dist
+        # Wrapper to objective function
+        self.func_wrapper = func_wrapper
+        # Wrapper to the local minimizer
+        self.minimizer_wrapper = minimizer_wrapper
+        self.not_improved_idx = 0
+        self.not_improved_max_idx = 1000
+        self._rand_gen = rand_gen
+        self.temperature_step = 0
+        self.K = 100 * len(energy_state.current_location)
+
+    def accept_reject(self, j, e, x_visit):
+        r = self._rand_gen.uniform()
+        pqv_temp = 1.0 - ((1.0 - self.acceptance_param) *
+            (e - self.energy_state.current_energy) / self.temperature_step)
+        if pqv_temp <= 0.:
+            pqv = 0.
+        else:
+            pqv = np.exp(np.log(pqv_temp) / (
+                1. - self.acceptance_param))
+
+        if r <= pqv:
+            # We accept the new location and update state
+            self.energy_state.update_current(e, x_visit)
+            self.xmin = np.copy(self.energy_state.current_location)
+
+        # No improvement for a long time
+        if self.not_improved_idx >= self.not_improved_max_idx:
+            if j == 0 or self.energy_state.current_energy < self.emin:
+                self.emin = self.energy_state.current_energy
+                self.xmin = np.copy(self.energy_state.current_location)
+
+    def run(self, step, temperature):
+        self.temperature_step = temperature / float(step + 1)
+        self.not_improved_idx += 1
+        for j in range(self.energy_state.current_location.size * 2):
+            if j == 0:
+                if step == 0:
+                    self.energy_state_improved = True
+                else:
+                    self.energy_state_improved = False
+            x_visit = self.visit_dist.visiting(
+                self.energy_state.current_location, j, temperature)
+            # Calling the objective function
+            e = self.func_wrapper.fun(x_visit)
+            if e < self.energy_state.current_energy:
+                # We have got a better energy value
+                self.energy_state.update_current(e, x_visit)
+                if e < self.energy_state.ebest:
+                    val = self.energy_state.update_best(e, x_visit, 0)
+                    if val is not None:
+                        if val:
+                            return val
+                    self.energy_state_improved = True
+                    self.not_improved_idx = 0
+            else:
+                # We have not improved but do we accept the new location?
+                self.accept_reject(j, e, x_visit)
+            if self.func_wrapper.nfev >= self.func_wrapper.maxfun:
+                return ('Maximum number of function call reached '
+                        'during annealing')
+        # End of StrategyChain loop
+
+    def local_search(self):
+        # Decision making for performing a local search
+        # based on strategy chain results
+        # If energy has been improved or no improvement since too long,
+        # performing a local search with the best strategy chain location
+        if self.energy_state_improved:
+            # Global energy has improved, let's see if LS improves further
+            e, x = self.minimizer_wrapper.local_search(self.energy_state.xbest,
+                                                       self.energy_state.ebest)
+            if e < self.energy_state.ebest:
+                self.not_improved_idx = 0
+                val = self.energy_state.update_best(e, x, 1)
+                if val is not None:
+                    if val:
+                        return val
+                self.energy_state.update_current(e, x)
+            if self.func_wrapper.nfev >= self.func_wrapper.maxfun:
+                return ('Maximum number of function call reached '
+                        'during local search')
+        # Check probability of a need to perform a LS even if no improvement
+        do_ls = False
+        if self.K < 90 * len(self.energy_state.current_location):
+            pls = np.exp(self.K * (
+                self.energy_state.ebest - self.energy_state.current_energy) /
+                self.temperature_step)
+            if pls >= self._rand_gen.uniform():
+                do_ls = True
+        # Global energy not improved, let's see what LS gives
+        # on the best strategy chain location
+        if self.not_improved_idx >= self.not_improved_max_idx:
+            do_ls = True
+        if do_ls:
+            e, x = self.minimizer_wrapper.local_search(self.xmin, self.emin)
+            self.xmin = np.copy(x)
+            self.emin = e
+            self.not_improved_idx = 0
+            self.not_improved_max_idx = self.energy_state.current_location.size
+            if e < self.energy_state.ebest:
+                val = self.energy_state.update_best(
+                    self.emin, self.xmin, 2)
+                if val is not None:
+                    if val:
+                        return val
+                self.energy_state.update_current(e, x)
+            if self.func_wrapper.nfev >= self.func_wrapper.maxfun:
+                return ('Maximum number of function call reached '
+                        'during dual annealing')
+
+
+class ObjectiveFunWrapper:
+
+    def __init__(self, func, maxfun=1e7, *args):
+        self.func = func
+        self.args = args
+        # Number of objective function evaluations
+        self.nfev = 0
+        # Number of gradient function evaluation if used
+        self.ngev = 0
+        # Number of hessian of the objective function if used
+        self.nhev = 0
+        self.maxfun = maxfun
+
+    def fun(self, x):
+        self.nfev += 1
+        return self.func(x, *self.args)
+
+
+class LocalSearchWrapper:
+    """
+    Class used to wrap around the minimizer used for local search
+    Default local minimizer is SciPy minimizer L-BFGS-B
+    """
+
+    LS_MAXITER_RATIO = 6
+    LS_MAXITER_MIN = 100
+    LS_MAXITER_MAX = 1000
+
+    def __init__(self, search_bounds, func_wrapper, *args, **kwargs):
+        self.func_wrapper = func_wrapper
+        self.kwargs = kwargs
+        self.jac = self.kwargs.get('jac', None)
+        self.minimizer = minimize
+        bounds_list = list(zip(*search_bounds))
+        self.lower = np.array(bounds_list[0])
+        self.upper = np.array(bounds_list[1])
+
+        # If no minimizer specified, use SciPy minimize with 'L-BFGS-B' method
+        if not self.kwargs:
+            n = len(self.lower)
+            ls_max_iter = min(max(n * self.LS_MAXITER_RATIO,
+                                  self.LS_MAXITER_MIN),
+                              self.LS_MAXITER_MAX)
+            self.kwargs['method'] = 'L-BFGS-B'
+            self.kwargs['options'] = {
+                'maxiter': ls_max_iter,
+            }
+            self.kwargs['bounds'] = list(zip(self.lower, self.upper))
+        elif callable(self.jac):
+            def wrapped_jac(x):
+                return self.jac(x, *args)
+            self.kwargs['jac'] = wrapped_jac
+
+    def local_search(self, x, e):
+        # Run local search from the given x location where energy value is e
+        x_tmp = np.copy(x)
+        mres = self.minimizer(self.func_wrapper.fun, x, **self.kwargs)
+        if 'njev' in mres:
+            self.func_wrapper.ngev += mres.njev
+        if 'nhev' in mres:
+            self.func_wrapper.nhev += mres.nhev
+        # Check if is valid value
+        is_finite = np.all(np.isfinite(mres.x)) and np.isfinite(mres.fun)
+        in_bounds = np.all(mres.x >= self.lower) and np.all(
+            mres.x <= self.upper)
+        is_valid = is_finite and in_bounds
+
+        # Use the new point only if it is valid and return a better results
+        if is_valid and mres.fun < e:
+            return mres.fun, mres.x
+        else:
+            return e, x_tmp
+
+
+def dual_annealing(func, bounds, args=(), maxiter=1000,
+                   minimizer_kwargs=None, initial_temp=5230.,
+                   restart_temp_ratio=2.e-5, visit=2.62, accept=-5.0,
+                   maxfun=1e7, seed=None, no_local_search=False,
+                   callback=None, x0=None):
+    """
+    Find the global minimum of a function using Dual Annealing.
+
+    Parameters
+    ----------
+    func : callable
+        The objective function to be minimized. Must be in the form
+        ``f(x, *args)``, where ``x`` is the argument in the form of a 1-D array
+        and ``args`` is a  tuple of any additional fixed parameters needed to
+        completely specify the function.
+    bounds : sequence or `Bounds`
+        Bounds for variables. There are two ways to specify the bounds:
+
+        1. Instance of `Bounds` class.
+        2. Sequence of ``(min, max)`` pairs for each element in `x`.
+
+    args : tuple, optional
+        Any additional fixed parameters needed to completely specify the
+        objective function.
+    maxiter : int, optional
+        The maximum number of global search iterations. Default value is 1000.
+    minimizer_kwargs : dict, optional
+        Extra keyword arguments to be passed to the local minimizer
+        (`minimize`). Some important options could be:
+        ``method`` for the minimizer method to use and ``args`` for
+        objective function additional arguments.
+    initial_temp : float, optional
+        The initial temperature, use higher values to facilitates a wider
+        search of the energy landscape, allowing dual_annealing to escape
+        local minima that it is trapped in. Default value is 5230. Range is
+        (0.01, 5.e4].
+    restart_temp_ratio : float, optional
+        During the annealing process, temperature is decreasing, when it
+        reaches ``initial_temp * restart_temp_ratio``, the reannealing process
+        is triggered. Default value of the ratio is 2e-5. Range is (0, 1).
+    visit : float, optional
+        Parameter for visiting distribution. Default value is 2.62. Higher
+        values give the visiting distribution a heavier tail, this makes
+        the algorithm jump to a more distant region. The value range is (1, 3].
+    accept : float, optional
+        Parameter for acceptance distribution. It is used to control the
+        probability of acceptance. The lower the acceptance parameter, the
+        smaller the probability of acceptance. Default value is -5.0 with
+        a range (-1e4, -5].
+    maxfun : int, optional
+        Soft limit for the number of objective function calls. If the
+        algorithm is in the middle of a local search, this number will be
+        exceeded, the algorithm will stop just after the local search is
+        done. Default value is 1e7.
+    seed : {None, int, `numpy.random.Generator`, `numpy.random.RandomState`}, optional
+        If `seed` is None (or `np.random`), the `numpy.random.RandomState`
+        singleton is used.
+        If `seed` is an int, a new ``RandomState`` instance is used,
+        seeded with `seed`.
+        If `seed` is already a ``Generator`` or ``RandomState`` instance then
+        that instance is used.
+        Specify `seed` for repeatable minimizations. The random numbers
+        generated with this seed only affect the visiting distribution function
+        and new coordinates generation.
+    no_local_search : bool, optional
+        If `no_local_search` is set to True, a traditional Generalized
+        Simulated Annealing will be performed with no local search
+        strategy applied.
+    callback : callable, optional
+        A callback function with signature ``callback(x, f, context)``,
+        which will be called for all minima found.
+        ``x`` and ``f`` are the coordinates and function value of the
+        latest minimum found, and ``context`` has value in [0, 1, 2], with the
+        following meaning:
+
+            - 0: minimum detected in the annealing process.
+            - 1: detection occurred in the local search process.
+            - 2: detection done in the dual annealing process.
+
+        If the callback implementation returns True, the algorithm will stop.
+    x0 : ndarray, shape(n,), optional
+        Coordinates of a single N-D starting point.
+
+    Returns
+    -------
+    res : OptimizeResult
+        The optimization result represented as a `OptimizeResult` object.
+        Important attributes are: ``x`` the solution array, ``fun`` the value
+        of the function at the solution, and ``message`` which describes the
+        cause of the termination.
+        See `OptimizeResult` for a description of other attributes.
+
+    Notes
+    -----
+    This function implements the Dual Annealing optimization. This stochastic
+    approach derived from [3]_ combines the generalization of CSA (Classical
+    Simulated Annealing) and FSA (Fast Simulated Annealing) [1]_ [2]_ coupled
+    to a strategy for applying a local search on accepted locations [4]_.
+    An alternative implementation of this same algorithm is described in [5]_
+    and benchmarks are presented in [6]_. This approach introduces an advanced
+    method to refine the solution found by the generalized annealing
+    process. This algorithm uses a distorted Cauchy-Lorentz visiting
+    distribution, with its shape controlled by the parameter :math:`q_{v}`
+
+    .. math::
+
+        g_{q_{v}}(\\Delta x(t)) \\propto \\frac{ \\
+        \\left[T_{q_{v}}(t) \\right]^{-\\frac{D}{3-q_{v}}}}{ \\
+        \\left[{1+(q_{v}-1)\\frac{(\\Delta x(t))^{2}} { \\
+        \\left[T_{q_{v}}(t)\\right]^{\\frac{2}{3-q_{v}}}}}\\right]^{ \\
+        \\frac{1}{q_{v}-1}+\\frac{D-1}{2}}}
+
+    Where :math:`t` is the artificial time. This visiting distribution is used
+    to generate a trial jump distance :math:`\\Delta x(t)` of variable
+    :math:`x(t)` under artificial temperature :math:`T_{q_{v}}(t)`.
+
+    From the starting point, after calling the visiting distribution
+    function, the acceptance probability is computed as follows:
+
+    .. math::
+
+        p_{q_{a}} = \\min{\\{1,\\left[1-(1-q_{a}) \\beta \\Delta E \\right]^{ \\
+        \\frac{1}{1-q_{a}}}\\}}
+
+    Where :math:`q_{a}` is a acceptance parameter. For :math:`q_{a}<1`, zero
+    acceptance probability is assigned to the cases where
+
+    .. math::
+
+        [1-(1-q_{a}) \\beta \\Delta E] < 0
+
+    The artificial temperature :math:`T_{q_{v}}(t)` is decreased according to
+
+    .. math::
+
+        T_{q_{v}}(t) = T_{q_{v}}(1) \\frac{2^{q_{v}-1}-1}{\\left( \\
+        1 + t\\right)^{q_{v}-1}-1}
+
+    Where :math:`q_{v}` is the visiting parameter.
+
+    .. versionadded:: 1.2.0
+
+    References
+    ----------
+    .. [1] Tsallis C. Possible generalization of Boltzmann-Gibbs
+        statistics. Journal of Statistical Physics, 52, 479-487 (1998).
+    .. [2] Tsallis C, Stariolo DA. Generalized Simulated Annealing.
+        Physica A, 233, 395-406 (1996).
+    .. [3] Xiang Y, Sun DY, Fan W, Gong XG. Generalized Simulated
+        Annealing Algorithm and Its Application to the Thomson Model.
+        Physics Letters A, 233, 216-220 (1997).
+    .. [4] Xiang Y, Gong XG. Efficiency of Generalized Simulated
+        Annealing. Physical Review E, 62, 4473 (2000).
+    .. [5] Xiang Y, Gubian S, Suomela B, Hoeng J. Generalized
+        Simulated Annealing for Efficient Global Optimization: the GenSA
+        Package for R. The R Journal, Volume 5/1 (2013).
+    .. [6] Mullen, K. Continuous Global Optimization in R. Journal of
+        Statistical Software, 60(6), 1 - 45, (2014).
+        :doi:`10.18637/jss.v060.i06`
+
+    Examples
+    --------
+    The following example is a 10-D problem, with many local minima.
+    The function involved is called Rastrigin
+    (https://en.wikipedia.org/wiki/Rastrigin_function)
+
+    >>> import numpy as np
+    >>> from scipy.optimize import dual_annealing
+    >>> func = lambda x: np.sum(x*x - 10*np.cos(2*np.pi*x)) + 10*np.size(x)
+    >>> lw = [-5.12] * 10
+    >>> up = [5.12] * 10
+    >>> ret = dual_annealing(func, bounds=list(zip(lw, up)))
+    >>> ret.x
+    array([-4.26437714e-09, -3.91699361e-09, -1.86149218e-09, -3.97165720e-09,
+           -6.29151648e-09, -6.53145322e-09, -3.93616815e-09, -6.55623025e-09,
+           -6.05775280e-09, -5.00668935e-09]) # random
+    >>> ret.fun
+    0.000000
+
+    """
+
+    if isinstance(bounds, Bounds):
+        bounds = new_bounds_to_old(bounds.lb, bounds.ub, len(bounds.lb))
+
+    if x0 is not None and not len(x0) == len(bounds):
+        raise ValueError('Bounds size does not match x0')
+
+    lu = list(zip(*bounds))
+    lower = np.array(lu[0])
+    upper = np.array(lu[1])
+    # Check that restart temperature ratio is correct
+    if restart_temp_ratio <= 0. or restart_temp_ratio >= 1.:
+        raise ValueError('Restart temperature ratio has to be in range (0, 1)')
+    # Checking bounds are valid
+    if (np.any(np.isinf(lower)) or np.any(np.isinf(upper)) or np.any(
+            np.isnan(lower)) or np.any(np.isnan(upper))):
+        raise ValueError('Some bounds values are inf values or nan values')
+    # Checking that bounds are consistent
+    if not np.all(lower < upper):
+        raise ValueError('Bounds are not consistent min < max')
+    # Checking that bounds are the same length
+    if not len(lower) == len(upper):
+        raise ValueError('Bounds do not have the same dimensions')
+
+    # Wrapper for the objective function
+    func_wrapper = ObjectiveFunWrapper(func, maxfun, *args)
+
+    # minimizer_kwargs has to be a dict, not None
+    minimizer_kwargs = minimizer_kwargs or {}
+
+    minimizer_wrapper = LocalSearchWrapper(
+        bounds, func_wrapper, *args, **minimizer_kwargs)
+
+    # Initialization of random Generator for reproducible runs if seed provided
+    rand_state = check_random_state(seed)
+    # Initialization of the energy state
+    energy_state = EnergyState(lower, upper, callback)
+    energy_state.reset(func_wrapper, rand_state, x0)
+    # Minimum value of annealing temperature reached to perform
+    # re-annealing
+    temperature_restart = initial_temp * restart_temp_ratio
+    # VisitingDistribution instance
+    visit_dist = VisitingDistribution(lower, upper, visit, rand_state)
+    # Strategy chain instance
+    strategy_chain = StrategyChain(accept, visit_dist, func_wrapper,
+                                   minimizer_wrapper, rand_state, energy_state)
+    need_to_stop = False
+    iteration = 0
+    message = []
+    # OptimizeResult object to be returned
+    optimize_res = OptimizeResult()
+    optimize_res.success = True
+    optimize_res.status = 0
+
+    t1 = np.exp((visit - 1) * np.log(2.0)) - 1.0
+    # Run the search loop
+    while not need_to_stop:
+        for i in range(maxiter):
+            # Compute temperature for this step
+            s = float(i) + 2.0
+            t2 = np.exp((visit - 1) * np.log(s)) - 1.0
+            temperature = initial_temp * t1 / t2
+            if iteration >= maxiter:
+                message.append("Maximum number of iteration reached")
+                need_to_stop = True
+                break
+            # Need a re-annealing process?
+            if temperature < temperature_restart:
+                energy_state.reset(func_wrapper, rand_state)
+                break
+            # starting strategy chain
+            val = strategy_chain.run(i, temperature)
+            if val is not None:
+                message.append(val)
+                need_to_stop = True
+                optimize_res.success = False
+                break
+            # Possible local search at the end of the strategy chain
+            if not no_local_search:
+                val = strategy_chain.local_search()
+                if val is not None:
+                    message.append(val)
+                    need_to_stop = True
+                    optimize_res.success = False
+                    break
+            iteration += 1
+
+    # Setting the OptimizeResult values
+    optimize_res.x = energy_state.xbest
+    optimize_res.fun = energy_state.ebest
+    optimize_res.nit = iteration
+    optimize_res.nfev = func_wrapper.nfev
+    optimize_res.njev = func_wrapper.ngev
+    optimize_res.nhev = func_wrapper.nhev
+    optimize_res.message = message
+    return optimize_res

env-llmeval/lib/python3.10/site-packages/scipy/optimize/_hessian_update_strategy.py

@@ -0,0 +1,430 @@
+"""Hessian update strategies for quasi-Newton optimization methods."""
+import numpy as np
+from numpy.linalg import norm
+from scipy.linalg import get_blas_funcs
+from warnings import warn
+
+
+__all__ = ['HessianUpdateStrategy', 'BFGS', 'SR1']
+
+
+class HessianUpdateStrategy:
+    """Interface for implementing Hessian update strategies.
+
+    Many optimization methods make use of Hessian (or inverse Hessian)
+    approximations, such as the quasi-Newton methods BFGS, SR1, L-BFGS.
+    Some of these  approximations, however, do not actually need to store
+    the entire matrix or can compute the internal matrix product with a
+    given vector in a very efficiently manner. This class serves as an
+    abstract interface between the optimization algorithm and the
+    quasi-Newton update strategies, giving freedom of implementation
+    to store and update the internal matrix as efficiently as possible.
+    Different choices of initialization and update procedure will result
+    in different quasi-Newton strategies.
+
+    Four methods should be implemented in derived classes: ``initialize``,
+    ``update``, ``dot`` and ``get_matrix``.
+
+    Notes
+    -----
+    Any instance of a class that implements this interface,
+    can be accepted by the method ``minimize`` and used by
+    the compatible solvers to approximate the Hessian (or
+    inverse Hessian) used by the optimization algorithms.
+    """
+
+    def initialize(self, n, approx_type):
+        """Initialize internal matrix.
+
+        Allocate internal memory for storing and updating
+        the Hessian or its inverse.
+
+        Parameters
+        ----------
+        n : int
+            Problem dimension.
+        approx_type : {'hess', 'inv_hess'}
+            Selects either the Hessian or the inverse Hessian.
+            When set to 'hess' the Hessian will be stored and updated.
+            When set to 'inv_hess' its inverse will be used instead.
+        """
+        raise NotImplementedError("The method ``initialize(n, approx_type)``"
+                                  " is not implemented.")
+
+    def update(self, delta_x, delta_grad):
+        """Update internal matrix.
+
+        Update Hessian matrix or its inverse (depending on how 'approx_type'
+        is defined) using information about the last evaluated points.
+
+        Parameters
+        ----------
+        delta_x : ndarray
+            The difference between two points the gradient
+            function have been evaluated at: ``delta_x = x2 - x1``.
+        delta_grad : ndarray
+            The difference between the gradients:
+            ``delta_grad = grad(x2) - grad(x1)``.
+        """
+        raise NotImplementedError("The method ``update(delta_x, delta_grad)``"
+                                  " is not implemented.")
+
+    def dot(self, p):
+        """Compute the product of the internal matrix with the given vector.
+
+        Parameters
+        ----------
+        p : array_like
+            1-D array representing a vector.
+
+        Returns
+        -------
+        Hp : array
+            1-D represents the result of multiplying the approximation matrix
+            by vector p.
+        """
+        raise NotImplementedError("The method ``dot(p)``"
+                                  " is not implemented.")
+
+    def get_matrix(self):
+        """Return current internal matrix.
+
+        Returns
+        -------
+        H : ndarray, shape (n, n)
+            Dense matrix containing either the Hessian
+            or its inverse (depending on how 'approx_type'
+            is defined).
+        """
+        raise NotImplementedError("The method ``get_matrix(p)``"
+                                  " is not implemented.")
+
+
+class FullHessianUpdateStrategy(HessianUpdateStrategy):
+    """Hessian update strategy with full dimensional internal representation.
+    """
+    _syr = get_blas_funcs('syr', dtype='d')  # Symmetric rank 1 update
+    _syr2 = get_blas_funcs('syr2', dtype='d')  # Symmetric rank 2 update
+    # Symmetric matrix-vector product
+    _symv = get_blas_funcs('symv', dtype='d')
+
+    def __init__(self, init_scale='auto'):
+        self.init_scale = init_scale
+        # Until initialize is called we can't really use the class,
+        # so it makes sense to set everything to None.
+        self.first_iteration = None
+        self.approx_type = None
+        self.B = None
+        self.H = None
+
+    def initialize(self, n, approx_type):
+        """Initialize internal matrix.
+
+        Allocate internal memory for storing and updating
+        the Hessian or its inverse.
+
+        Parameters
+        ----------
+        n : int
+            Problem dimension.
+        approx_type : {'hess', 'inv_hess'}
+            Selects either the Hessian or the inverse Hessian.
+            When set to 'hess' the Hessian will be stored and updated.
+            When set to 'inv_hess' its inverse will be used instead.
+        """
+        self.first_iteration = True
+        self.n = n
+        self.approx_type = approx_type
+        if approx_type not in ('hess', 'inv_hess'):
+            raise ValueError("`approx_type` must be 'hess' or 'inv_hess'.")
+        # Create matrix
+        if self.approx_type == 'hess':
+            self.B = np.eye(n, dtype=float)
+        else:
+            self.H = np.eye(n, dtype=float)
+
+    def _auto_scale(self, delta_x, delta_grad):
+        # Heuristic to scale matrix at first iteration.
+        # Described in Nocedal and Wright "Numerical Optimization"
+        # p.143 formula (6.20).
+        s_norm2 = np.dot(delta_x, delta_x)
+        y_norm2 = np.dot(delta_grad, delta_grad)
+        ys = np.abs(np.dot(delta_grad, delta_x))
+        if ys == 0.0 or y_norm2 == 0 or s_norm2 == 0:
+            return 1
+        if self.approx_type == 'hess':
+            return y_norm2 / ys
+        else:
+            return ys / y_norm2
+
+    def _update_implementation(self, delta_x, delta_grad):
+        raise NotImplementedError("The method ``_update_implementation``"
+                                  " is not implemented.")
+
+    def update(self, delta_x, delta_grad):
+        """Update internal matrix.
+
+        Update Hessian matrix or its inverse (depending on how 'approx_type'
+        is defined) using information about the last evaluated points.
+
+        Parameters
+        ----------
+        delta_x : ndarray
+            The difference between two points the gradient
+            function have been evaluated at: ``delta_x = x2 - x1``.
+        delta_grad : ndarray
+            The difference between the gradients:
+            ``delta_grad = grad(x2) - grad(x1)``.
+        """
+        if np.all(delta_x == 0.0):
+            return
+        if np.all(delta_grad == 0.0):
+            warn('delta_grad == 0.0. Check if the approximated '
+                 'function is linear. If the function is linear '
+                 'better results can be obtained by defining the '
+                 'Hessian as zero instead of using quasi-Newton '
+                 'approximations.',
+                 UserWarning, stacklevel=2)
+            return
+        if self.first_iteration:
+            # Get user specific scale
+            if self.init_scale == "auto":
+                scale = self._auto_scale(delta_x, delta_grad)
+            else:
+                scale = float(self.init_scale)
+            # Scale initial matrix with ``scale * np.eye(n)``
+            if self.approx_type == 'hess':
+                self.B *= scale
+            else:
+                self.H *= scale
+            self.first_iteration = False
+        self._update_implementation(delta_x, delta_grad)
+
+    def dot(self, p):
+        """Compute the product of the internal matrix with the given vector.
+
+        Parameters
+        ----------
+        p : array_like
+            1-D array representing a vector.
+
+        Returns
+        -------
+        Hp : array
+            1-D represents the result of multiplying the approximation matrix
+            by vector p.
+        """
+        if self.approx_type == 'hess':
+            return self._symv(1, self.B, p)
+        else:
+            return self._symv(1, self.H, p)
+
+    def get_matrix(self):
+        """Return the current internal matrix.
+
+        Returns
+        -------
+        M : ndarray, shape (n, n)
+            Dense matrix containing either the Hessian or its inverse
+            (depending on how `approx_type` was defined).
+        """
+        if self.approx_type == 'hess':
+            M = np.copy(self.B)
+        else:
+            M = np.copy(self.H)
+        li = np.tril_indices_from(M, k=-1)
+        M[li] = M.T[li]
+        return M
+
+
+class BFGS(FullHessianUpdateStrategy):
+    """Broyden-Fletcher-Goldfarb-Shanno (BFGS) Hessian update strategy.
+
+    Parameters
+    ----------
+    exception_strategy : {'skip_update', 'damp_update'}, optional
+        Define how to proceed when the curvature condition is violated.
+        Set it to 'skip_update' to just skip the update. Or, alternatively,
+        set it to 'damp_update' to interpolate between the actual BFGS
+        result and the unmodified matrix. Both exceptions strategies
+        are explained  in [1]_, p.536-537.
+    min_curvature : float
+        This number, scaled by a normalization factor, defines the
+        minimum curvature ``dot(delta_grad, delta_x)`` allowed to go
+        unaffected by the exception strategy. By default is equal to
+        1e-8 when ``exception_strategy = 'skip_update'`` and equal
+        to 0.2 when ``exception_strategy = 'damp_update'``.
+    init_scale : {float, 'auto'}
+        Matrix scale at first iteration. At the first
+        iteration the Hessian matrix or its inverse will be initialized
+        with ``init_scale*np.eye(n)``, where ``n`` is the problem dimension.
+        Set it to 'auto' in order to use an automatic heuristic for choosing
+        the initial scale. The heuristic is described in [1]_, p.143.
+        By default uses 'auto'.
+
+    Notes
+    -----
+    The update is based on the description in [1]_, p.140.
+
+    References
+    ----------
+    .. [1] Nocedal, Jorge, and Stephen J. Wright. "Numerical optimization"
+           Second Edition (2006).
+    """
+
+    def __init__(self, exception_strategy='skip_update', min_curvature=None,
+                 init_scale='auto'):
+        if exception_strategy == 'skip_update':
+            if min_curvature is not None:
+                self.min_curvature = min_curvature
+            else:
+                self.min_curvature = 1e-8
+        elif exception_strategy == 'damp_update':
+            if min_curvature is not None:
+                self.min_curvature = min_curvature
+            else:
+                self.min_curvature = 0.2
+        else:
+            raise ValueError("`exception_strategy` must be 'skip_update' "
+                             "or 'damp_update'.")
+
+        super().__init__(init_scale)
+        self.exception_strategy = exception_strategy
+
+    def _update_inverse_hessian(self, ys, Hy, yHy, s):
+        """Update the inverse Hessian matrix.
+
+        BFGS update using the formula:
+
+            ``H <- H + ((H*y).T*y + s.T*y)/(s.T*y)^2 * (s*s.T)
+                     - 1/(s.T*y) * ((H*y)*s.T + s*(H*y).T)``
+
+        where ``s = delta_x`` and ``y = delta_grad``. This formula is
+        equivalent to (6.17) in [1]_ written in a more efficient way
+        for implementation.
+
+        References
+        ----------
+        .. [1] Nocedal, Jorge, and Stephen J. Wright. "Numerical optimization"
+               Second Edition (2006).
+        """
+        self.H = self._syr2(-1.0 / ys, s, Hy, a=self.H)
+        self.H = self._syr((ys+yHy)/ys**2, s, a=self.H)
+
+    def _update_hessian(self, ys, Bs, sBs, y):
+        """Update the Hessian matrix.
+
+        BFGS update using the formula:
+
+            ``B <- B - (B*s)*(B*s).T/s.T*(B*s) + y*y^T/s.T*y``
+
+        where ``s`` is short for ``delta_x`` and ``y`` is short
+        for ``delta_grad``. Formula (6.19) in [1]_.
+
+        References
+        ----------
+        .. [1] Nocedal, Jorge, and Stephen J. Wright. "Numerical optimization"
+               Second Edition (2006).
+        """
+        self.B = self._syr(1.0 / ys, y, a=self.B)
+        self.B = self._syr(-1.0 / sBs, Bs, a=self.B)
+
+    def _update_implementation(self, delta_x, delta_grad):
+        # Auxiliary variables w and z
+        if self.approx_type == 'hess':
+            w = delta_x
+            z = delta_grad
+        else:
+            w = delta_grad
+            z = delta_x
+        # Do some common operations
+        wz = np.dot(w, z)
+        Mw = self.dot(w)
+        wMw = Mw.dot(w)
+        # Guarantee that wMw > 0 by reinitializing matrix.
+        # While this is always true in exact arithmetic,
+        # indefinite matrix may appear due to roundoff errors.
+        if wMw <= 0.0:
+            scale = self._auto_scale(delta_x, delta_grad)
+            # Reinitialize matrix
+            if self.approx_type == 'hess':
+                self.B = scale * np.eye(self.n, dtype=float)
+            else:
+                self.H = scale * np.eye(self.n, dtype=float)
+            # Do common operations for new matrix
+            Mw = self.dot(w)
+            wMw = Mw.dot(w)
+        # Check if curvature condition is violated
+        if wz <= self.min_curvature * wMw:
+            # If the option 'skip_update' is set
+            # we just skip the update when the condition
+            # is violated.
+            if self.exception_strategy == 'skip_update':
+                return
+            # If the option 'damp_update' is set we
+            # interpolate between the actual BFGS
+            # result and the unmodified matrix.
+            elif self.exception_strategy == 'damp_update':
+                update_factor = (1-self.min_curvature) / (1 - wz/wMw)
+                z = update_factor*z + (1-update_factor)*Mw
+                wz = np.dot(w, z)
+        # Update matrix
+        if self.approx_type == 'hess':
+            self._update_hessian(wz, Mw, wMw, z)
+        else:
+            self._update_inverse_hessian(wz, Mw, wMw, z)
+
+
+class SR1(FullHessianUpdateStrategy):
+    """Symmetric-rank-1 Hessian update strategy.
+
+    Parameters
+    ----------
+    min_denominator : float
+        This number, scaled by a normalization factor,
+        defines the minimum denominator magnitude allowed
+        in the update. When the condition is violated we skip
+        the update. By default uses ``1e-8``.
+    init_scale : {float, 'auto'}, optional
+        Matrix scale at first iteration. At the first
+        iteration the Hessian matrix or its inverse will be initialized
+        with ``init_scale*np.eye(n)``, where ``n`` is the problem dimension.
+        Set it to 'auto' in order to use an automatic heuristic for choosing
+        the initial scale. The heuristic is described in [1]_, p.143.
+        By default uses 'auto'.
+
+    Notes
+    -----
+    The update is based on the description in [1]_, p.144-146.
+
+    References
+    ----------
+    .. [1] Nocedal, Jorge, and Stephen J. Wright. "Numerical optimization"
+           Second Edition (2006).
+    """
+
+    def __init__(self, min_denominator=1e-8, init_scale='auto'):
+        self.min_denominator = min_denominator
+        super().__init__(init_scale)
+
+    def _update_implementation(self, delta_x, delta_grad):
+        # Auxiliary variables w and z
+        if self.approx_type == 'hess':
+            w = delta_x
+            z = delta_grad
+        else:
+            w = delta_grad
+            z = delta_x
+        # Do some common operations
+        Mw = self.dot(w)
+        z_minus_Mw = z - Mw
+        denominator = np.dot(w, z_minus_Mw)
+        # If the denominator is too small
+        # we just skip the update.
+        if np.abs(denominator) <= self.min_denominator*norm(w)*norm(z_minus_Mw):
+            return
+        # Update matrix
+        if self.approx_type == 'hess':
+            self.B = self._syr(1/denominator, z_minus_Mw, a=self.B)
+        else:
+            self.H = self._syr(1/denominator, z_minus_Mw, a=self.H)

env-llmeval/lib/python3.10/site-packages/scipy/optimize/_highs/src/cython/HighsLp.pxd

@@ -0,0 +1,46 @@
+# cython: language_level=3
+
+from libcpp cimport bool
+from libcpp.string cimport string
+from libcpp.vector cimport vector
+
+from .HConst cimport HighsBasisStatus, ObjSense, HighsVarType
+from .HighsSparseMatrix cimport HighsSparseMatrix
+
+
+cdef extern from "HighsLp.h" nogil:
+    # From HiGHS/src/lp_data/HighsLp.h
+    cdef cppclass HighsLp:
+        int num_col_
+        int num_row_
+
+        vector[double] col_cost_
+        vector[double] col_lower_
+        vector[double] col_upper_
+        vector[double] row_lower_
+        vector[double] row_upper_
+
+        HighsSparseMatrix a_matrix_
+
+        ObjSense sense_
+        double offset_
+
+        string model_name_
+
+        vector[string] row_names_
+        vector[string] col_names_
+
+        vector[HighsVarType] integrality_
+
+        bool isMip() const
+
+    cdef cppclass HighsSolution:
+        vector[double] col_value
+        vector[double] col_dual
+        vector[double] row_value
+        vector[double] row_dual
+
+    cdef cppclass HighsBasis:
+        bool valid_
+        vector[HighsBasisStatus] col_status
+        vector[HighsBasisStatus] row_status

env-llmeval/lib/python3.10/site-packages/scipy/optimize/_lbfgsb_py.py

@@ -0,0 +1,543 @@
+"""
+Functions
+---------
+.. autosummary::
+   :toctree: generated/
+
+    fmin_l_bfgs_b
+
+"""
+
+## License for the Python wrapper
+## ==============================
+
+## Copyright (c) 2004 David M. Cooke <[email protected]>
+
+## Permission is hereby granted, free of charge, to any person obtaining a
+## copy of this software and associated documentation files (the "Software"),
+## to deal in the Software without restriction, including without limitation
+## the rights to use, copy, modify, merge, publish, distribute, sublicense,
+## and/or sell copies of the Software, and to permit persons to whom the
+## Software is furnished to do so, subject to the following conditions:
+
+## The above copyright notice and this permission notice shall be included in
+## all copies or substantial portions of the Software.
+
+## THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+## IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+## FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+## AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+## LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
+## FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
+## DEALINGS IN THE SOFTWARE.
+
+## Modifications by Travis Oliphant and Enthought, Inc. for inclusion in SciPy
+
+import numpy as np
+from numpy import array, asarray, float64, zeros
+from . import _lbfgsb
+from ._optimize import (MemoizeJac, OptimizeResult, _call_callback_maybe_halt,
+                        _wrap_callback, _check_unknown_options,
+                        _prepare_scalar_function)
+from ._constraints import old_bound_to_new
+
+from scipy.sparse.linalg import LinearOperator
+
+__all__ = ['fmin_l_bfgs_b', 'LbfgsInvHessProduct']
+
+
+def fmin_l_bfgs_b(func, x0, fprime=None, args=(),
+                  approx_grad=0,
+                  bounds=None, m=10, factr=1e7, pgtol=1e-5,
+                  epsilon=1e-8,
+                  iprint=-1, maxfun=15000, maxiter=15000, disp=None,
+                  callback=None, maxls=20):
+    """
+    Minimize a function func using the L-BFGS-B algorithm.
+
+    Parameters
+    ----------
+    func : callable f(x,*args)
+        Function to minimize.
+    x0 : ndarray
+        Initial guess.
+    fprime : callable fprime(x,*args), optional
+        The gradient of `func`. If None, then `func` returns the function
+        value and the gradient (``f, g = func(x, *args)``), unless
+        `approx_grad` is True in which case `func` returns only ``f``.
+    args : sequence, optional
+        Arguments to pass to `func` and `fprime`.
+    approx_grad : bool, optional
+        Whether to approximate the gradient numerically (in which case
+        `func` returns only the function value).
+    bounds : list, optional
+        ``(min, max)`` pairs for each element in ``x``, defining
+        the bounds on that parameter. Use None or +-inf for one of ``min`` or
+        ``max`` when there is no bound in that direction.
+    m : int, optional
+        The maximum number of variable metric corrections
+        used to define the limited memory matrix. (The limited memory BFGS
+        method does not store the full hessian but uses this many terms in an
+        approximation to it.)
+    factr : float, optional
+        The iteration stops when
+        ``(f^k - f^{k+1})/max{|f^k|,|f^{k+1}|,1} <= factr * eps``,
+        where ``eps`` is the machine precision, which is automatically
+        generated by the code. Typical values for `factr` are: 1e12 for
+        low accuracy; 1e7 for moderate accuracy; 10.0 for extremely
+        high accuracy. See Notes for relationship to `ftol`, which is exposed
+        (instead of `factr`) by the `scipy.optimize.minimize` interface to
+        L-BFGS-B.
+    pgtol : float, optional
+        The iteration will stop when
+        ``max{|proj g_i | i = 1, ..., n} <= pgtol``
+        where ``proj g_i`` is the i-th component of the projected gradient.
+    epsilon : float, optional
+        Step size used when `approx_grad` is True, for numerically
+        calculating the gradient
+    iprint : int, optional
+        Controls the frequency of output. ``iprint < 0`` means no output;
+        ``iprint = 0``    print only one line at the last iteration;
+        ``0 < iprint < 99`` print also f and ``|proj g|`` every iprint iterations;
+        ``iprint = 99``   print details of every iteration except n-vectors;
+        ``iprint = 100``  print also the changes of active set and final x;
+        ``iprint > 100``  print details of every iteration including x and g.
+    disp : int, optional
+        If zero, then no output. If a positive number, then this over-rides
+        `iprint` (i.e., `iprint` gets the value of `disp`).
+    maxfun : int, optional
+        Maximum number of function evaluations. Note that this function
+        may violate the limit because of evaluating gradients by numerical
+        differentiation.
+    maxiter : int, optional
+        Maximum number of iterations.
+    callback : callable, optional
+        Called after each iteration, as ``callback(xk)``, where ``xk`` is the
+        current parameter vector.
+    maxls : int, optional
+        Maximum number of line search steps (per iteration). Default is 20.
+
+    Returns
+    -------
+    x : array_like
+        Estimated position of the minimum.
+    f : float
+        Value of `func` at the minimum.
+    d : dict
+        Information dictionary.
+
+        * d['warnflag'] is
+
+          - 0 if converged,
+          - 1 if too many function evaluations or too many iterations,
+          - 2 if stopped for another reason, given in d['task']
+
+        * d['grad'] is the gradient at the minimum (should be 0 ish)
+        * d['funcalls'] is the number of function calls made.
+        * d['nit'] is the number of iterations.
+
+    See also
+    --------
+    minimize: Interface to minimization algorithms for multivariate
+        functions. See the 'L-BFGS-B' `method` in particular. Note that the
+        `ftol` option is made available via that interface, while `factr` is
+        provided via this interface, where `factr` is the factor multiplying
+        the default machine floating-point precision to arrive at `ftol`:
+        ``ftol = factr * numpy.finfo(float).eps``.
+
+    Notes
+    -----
+    License of L-BFGS-B (FORTRAN code):
+
+    The version included here (in fortran code) is 3.0
+    (released April 25, 2011). It was written by Ciyou Zhu, Richard Byrd,
+    and Jorge Nocedal <[email protected]>. It carries the following
+    condition for use:
+
+    This software is freely available, but we expect that all publications
+    describing work using this software, or all commercial products using it,
+    quote at least one of the references given below. This software is released
+    under the BSD License.
+
+    References
+    ----------
+    * R. H. Byrd, P. Lu and J. Nocedal. A Limited Memory Algorithm for Bound
+      Constrained Optimization, (1995), SIAM Journal on Scientific and
+      Statistical Computing, 16, 5, pp. 1190-1208.
+    * C. Zhu, R. H. Byrd and J. Nocedal. L-BFGS-B: Algorithm 778: L-BFGS-B,
+      FORTRAN routines for large scale bound constrained optimization (1997),
+      ACM Transactions on Mathematical Software, 23, 4, pp. 550 - 560.
+    * J.L. Morales and J. Nocedal. L-BFGS-B: Remark on Algorithm 778: L-BFGS-B,
+      FORTRAN routines for large scale bound constrained optimization (2011),
+      ACM Transactions on Mathematical Software, 38, 1.
+
+    Examples
+    --------
+    Solve a linear regression problem via `fmin_l_bfgs_b`. To do this, first we define
+    an objective function ``f(m, b) = (y - y_model)**2``, where `y` describes the
+    observations and `y_model` the prediction of the linear model as
+    ``y_model = m*x + b``. The bounds for the parameters, ``m`` and ``b``, are arbitrarily
+    chosen as ``(0,5)`` and ``(5,10)`` for this example.
+
+    >>> import numpy as np
+    >>> from scipy.optimize import fmin_l_bfgs_b
+    >>> X = np.arange(0, 10, 1)
+    >>> M = 2
+    >>> B = 3
+    >>> Y = M * X + B
+    >>> def func(parameters, *args):
+    ...     x = args[0]
+    ...     y = args[1]
+    ...     m, b = parameters
+    ...     y_model = m*x + b
+    ...     error = sum(np.power((y - y_model), 2))
+    ...     return error
+
+    >>> initial_values = np.array([0.0, 1.0])
+
+    >>> x_opt, f_opt, info = fmin_l_bfgs_b(func, x0=initial_values, args=(X, Y),
+    ...                                    approx_grad=True)
+    >>> x_opt, f_opt
+    array([1.99999999, 3.00000006]), 1.7746231151323805e-14  # may vary
+
+    The optimized parameters in ``x_opt`` agree with the ground truth parameters
+    ``m`` and ``b``. Next, let us perform a bound contrained optimization using the `bounds`
+    parameter. 
+
+    >>> bounds = [(0, 5), (5, 10)]
+    >>> x_opt, f_op, info = fmin_l_bfgs_b(func, x0=initial_values, args=(X, Y),
+    ...                                   approx_grad=True, bounds=bounds)
+    >>> x_opt, f_opt
+    array([1.65990508, 5.31649385]), 15.721334516453945  # may vary    
+    """
+    # handle fprime/approx_grad
+    if approx_grad:
+        fun = func
+        jac = None
+    elif fprime is None:
+        fun = MemoizeJac(func)
+        jac = fun.derivative
+    else:
+        fun = func
+        jac = fprime
+
+    # build options
+    callback = _wrap_callback(callback)
+    opts = {'disp': disp,
+            'iprint': iprint,
+            'maxcor': m,
+            'ftol': factr * np.finfo(float).eps,
+            'gtol': pgtol,
+            'eps': epsilon,
+            'maxfun': maxfun,
+            'maxiter': maxiter,
+            'callback': callback,
+            'maxls': maxls}
+
+    res = _minimize_lbfgsb(fun, x0, args=args, jac=jac, bounds=bounds,
+                           **opts)
+    d = {'grad': res['jac'],
+         'task': res['message'],
+         'funcalls': res['nfev'],
+         'nit': res['nit'],
+         'warnflag': res['status']}
+    f = res['fun']
+    x = res['x']
+
+    return x, f, d
+
+
+def _minimize_lbfgsb(fun, x0, args=(), jac=None, bounds=None,
+                     disp=None, maxcor=10, ftol=2.2204460492503131e-09,
+                     gtol=1e-5, eps=1e-8, maxfun=15000, maxiter=15000,
+                     iprint=-1, callback=None, maxls=20,
+                     finite_diff_rel_step=None, **unknown_options):
+    """
+    Minimize a scalar function of one or more variables using the L-BFGS-B
+    algorithm.
+
+    Options
+    -------
+    disp : None or int
+        If `disp is None` (the default), then the supplied version of `iprint`
+        is used. If `disp is not None`, then it overrides the supplied version
+        of `iprint` with the behaviour you outlined.
+    maxcor : int
+        The maximum number of variable metric corrections used to
+        define the limited memory matrix. (The limited memory BFGS
+        method does not store the full hessian but uses this many terms
+        in an approximation to it.)
+    ftol : float
+        The iteration stops when ``(f^k -
+        f^{k+1})/max{|f^k|,|f^{k+1}|,1} <= ftol``.
+    gtol : float
+        The iteration will stop when ``max{|proj g_i | i = 1, ..., n}
+        <= gtol`` where ``proj g_i`` is the i-th component of the
+        projected gradient.
+    eps : float or ndarray
+        If `jac is None` the absolute step size used for numerical
+        approximation of the jacobian via forward differences.
+    maxfun : int
+        Maximum number of function evaluations. Note that this function
+        may violate the limit because of evaluating gradients by numerical
+        differentiation.
+    maxiter : int
+        Maximum number of iterations.
+    iprint : int, optional
+        Controls the frequency of output. ``iprint < 0`` means no output;
+        ``iprint = 0``    print only one line at the last iteration;
+        ``0 < iprint < 99`` print also f and ``|proj g|`` every iprint iterations;
+        ``iprint = 99``   print details of every iteration except n-vectors;
+        ``iprint = 100``  print also the changes of active set and final x;
+        ``iprint > 100``  print details of every iteration including x and g.
+    maxls : int, optional
+        Maximum number of line search steps (per iteration). Default is 20.
+    finite_diff_rel_step : None or array_like, optional
+        If `jac in ['2-point', '3-point', 'cs']` the relative step size to
+        use for numerical approximation of the jacobian. The absolute step
+        size is computed as ``h = rel_step * sign(x) * max(1, abs(x))``,
+        possibly adjusted to fit into the bounds. For ``method='3-point'``
+        the sign of `h` is ignored. If None (default) then step is selected
+        automatically.
+
+    Notes
+    -----
+    The option `ftol` is exposed via the `scipy.optimize.minimize` interface,
+    but calling `scipy.optimize.fmin_l_bfgs_b` directly exposes `factr`. The
+    relationship between the two is ``ftol = factr * numpy.finfo(float).eps``.
+    I.e., `factr` multiplies the default machine floating-point precision to
+    arrive at `ftol`.
+
+    """
+    _check_unknown_options(unknown_options)
+    m = maxcor
+    pgtol = gtol
+    factr = ftol / np.finfo(float).eps
+
+    x0 = asarray(x0).ravel()
+    n, = x0.shape
+
+    # historically old-style bounds were/are expected by lbfgsb.
+    # That's still the case but we'll deal with new-style from here on,
+    # it's easier
+    if bounds is None:
+        pass
+    elif len(bounds) != n:
+        raise ValueError('length of x0 != length of bounds')
+    else:
+        bounds = np.array(old_bound_to_new(bounds))
+
+        # check bounds
+        if (bounds[0] > bounds[1]).any():
+            raise ValueError(
+                "LBFGSB - one of the lower bounds is greater than an upper bound."
+            )
+
+        # initial vector must lie within the bounds. Otherwise ScalarFunction and
+        # approx_derivative will cause problems
+        x0 = np.clip(x0, bounds[0], bounds[1])
+
+    if disp is not None:
+        if disp == 0:
+            iprint = -1
+        else:
+            iprint = disp
+
+    # _prepare_scalar_function can use bounds=None to represent no bounds
+    sf = _prepare_scalar_function(fun, x0, jac=jac, args=args, epsilon=eps,
+                                  bounds=bounds,
+                                  finite_diff_rel_step=finite_diff_rel_step)
+
+    func_and_grad = sf.fun_and_grad
+
+    fortran_int = _lbfgsb.types.intvar.dtype
+
+    nbd = zeros(n, fortran_int)
+    low_bnd = zeros(n, float64)
+    upper_bnd = zeros(n, float64)
+    bounds_map = {(-np.inf, np.inf): 0,
+                  (1, np.inf): 1,
+                  (1, 1): 2,
+                  (-np.inf, 1): 3}
+
+    if bounds is not None:
+        for i in range(0, n):
+            l, u = bounds[0, i], bounds[1, i]
+            if not np.isinf(l):
+                low_bnd[i] = l
+                l = 1
+            if not np.isinf(u):
+                upper_bnd[i] = u
+                u = 1
+            nbd[i] = bounds_map[l, u]
+
+    if not maxls > 0:
+        raise ValueError('maxls must be positive.')
+
+    x = array(x0, float64)
+    f = array(0.0, float64)
+    g = zeros((n,), float64)
+    wa = zeros(2*m*n + 5*n + 11*m*m + 8*m, float64)
+    iwa = zeros(3*n, fortran_int)
+    task = zeros(1, 'S60')
+    csave = zeros(1, 'S60')
+    lsave = zeros(4, fortran_int)
+    isave = zeros(44, fortran_int)
+    dsave = zeros(29, float64)
+
+    task[:] = 'START'
+
+    n_iterations = 0
+
+    while 1:
+        # g may become float32 if a user provides a function that calculates
+        # the Jacobian in float32 (see gh-18730). The underlying Fortran code
+        # expects float64, so upcast it
+        g = g.astype(np.float64)
+        # x, f, g, wa, iwa, task, csave, lsave, isave, dsave = \
+        _lbfgsb.setulb(m, x, low_bnd, upper_bnd, nbd, f, g, factr,
+                       pgtol, wa, iwa, task, iprint, csave, lsave,
+                       isave, dsave, maxls)
+        task_str = task.tobytes()
+        if task_str.startswith(b'FG'):
+            # The minimization routine wants f and g at the current x.
+            # Note that interruptions due to maxfun are postponed
+            # until the completion of the current minimization iteration.
+            # Overwrite f and g:
+            f, g = func_and_grad(x)
+        elif task_str.startswith(b'NEW_X'):
+            # new iteration
+            n_iterations += 1
+
+            intermediate_result = OptimizeResult(x=x, fun=f)
+            if _call_callback_maybe_halt(callback, intermediate_result):
+                task[:] = 'STOP: CALLBACK REQUESTED HALT'
+            if n_iterations >= maxiter:
+                task[:] = 'STOP: TOTAL NO. of ITERATIONS REACHED LIMIT'
+            elif sf.nfev > maxfun:
+                task[:] = ('STOP: TOTAL NO. of f AND g EVALUATIONS '
+                           'EXCEEDS LIMIT')
+        else:
+            break
+
+    task_str = task.tobytes().strip(b'\x00').strip()
+    if task_str.startswith(b'CONV'):
+        warnflag = 0
+    elif sf.nfev > maxfun or n_iterations >= maxiter:
+        warnflag = 1
+    else:
+        warnflag = 2
+
+    # These two portions of the workspace are described in the mainlb
+    # subroutine in lbfgsb.f. See line 363.
+    s = wa[0: m*n].reshape(m, n)
+    y = wa[m*n: 2*m*n].reshape(m, n)
+
+    # See lbfgsb.f line 160 for this portion of the workspace.
+    # isave(31) = the total number of BFGS updates prior the current iteration;
+    n_bfgs_updates = isave[30]
+
+    n_corrs = min(n_bfgs_updates, maxcor)
+    hess_inv = LbfgsInvHessProduct(s[:n_corrs], y[:n_corrs])
+
+    task_str = task_str.decode()
+    return OptimizeResult(fun=f, jac=g, nfev=sf.nfev,
+                          njev=sf.ngev,
+                          nit=n_iterations, status=warnflag, message=task_str,
+                          x=x, success=(warnflag == 0), hess_inv=hess_inv)
+
+
+class LbfgsInvHessProduct(LinearOperator):
+    """Linear operator for the L-BFGS approximate inverse Hessian.
+
+    This operator computes the product of a vector with the approximate inverse
+    of the Hessian of the objective function, using the L-BFGS limited
+    memory approximation to the inverse Hessian, accumulated during the
+    optimization.
+
+    Objects of this class implement the ``scipy.sparse.linalg.LinearOperator``
+    interface.
+
+    Parameters
+    ----------
+    sk : array_like, shape=(n_corr, n)
+        Array of `n_corr` most recent updates to the solution vector.
+        (See [1]).
+    yk : array_like, shape=(n_corr, n)
+        Array of `n_corr` most recent updates to the gradient. (See [1]).
+
+    References
+    ----------
+    .. [1] Nocedal, Jorge. "Updating quasi-Newton matrices with limited
+       storage." Mathematics of computation 35.151 (1980): 773-782.
+
+    """
+
+    def __init__(self, sk, yk):
+        """Construct the operator."""
+        if sk.shape != yk.shape or sk.ndim != 2:
+            raise ValueError('sk and yk must have matching shape, (n_corrs, n)')
+        n_corrs, n = sk.shape
+
+        super().__init__(dtype=np.float64, shape=(n, n))
+
+        self.sk = sk
+        self.yk = yk
+        self.n_corrs = n_corrs
+        self.rho = 1 / np.einsum('ij,ij->i', sk, yk)
+
+    def _matvec(self, x):
+        """Efficient matrix-vector multiply with the BFGS matrices.
+
+        This calculation is described in Section (4) of [1].
+
+        Parameters
+        ----------
+        x : ndarray
+            An array with shape (n,) or (n,1).
+
+        Returns
+        -------
+        y : ndarray
+            The matrix-vector product
+
+        """
+        s, y, n_corrs, rho = self.sk, self.yk, self.n_corrs, self.rho
+        q = np.array(x, dtype=self.dtype, copy=True)
+        if q.ndim == 2 and q.shape[1] == 1:
+            q = q.reshape(-1)
+
+        alpha = np.empty(n_corrs)
+
+        for i in range(n_corrs-1, -1, -1):
+            alpha[i] = rho[i] * np.dot(s[i], q)
+            q = q - alpha[i]*y[i]
+
+        r = q
+        for i in range(n_corrs):
+            beta = rho[i] * np.dot(y[i], r)
+            r = r + s[i] * (alpha[i] - beta)
+
+        return r
+
+    def todense(self):
+        """Return a dense array representation of this operator.
+
+        Returns
+        -------
+        arr : ndarray, shape=(n, n)
+            An array with the same shape and containing
+            the same data represented by this `LinearOperator`.
+
+        """
+        s, y, n_corrs, rho = self.sk, self.yk, self.n_corrs, self.rho
+        I = np.eye(*self.shape, dtype=self.dtype)
+        Hk = I
+
+        for i in range(n_corrs):
+            A1 = I - s[i][:, np.newaxis] * y[i][np.newaxis, :] * rho[i]
+            A2 = I - y[i][:, np.newaxis] * s[i][np.newaxis, :] * rho[i]
+
+            Hk = np.dot(A1, np.dot(Hk, A2)) + (rho[i] * s[i][:, np.newaxis] *
+                                                        s[i][np.newaxis, :])
+        return Hk

env-llmeval/lib/python3.10/site-packages/scipy/optimize/_linesearch.py

@@ -0,0 +1,897 @@
+"""
+Functions
+---------
+.. autosummary::
+   :toctree: generated/
+
+    line_search_armijo
+    line_search_wolfe1
+    line_search_wolfe2
+    scalar_search_wolfe1
+    scalar_search_wolfe2
+
+"""
+from warnings import warn
+
+from scipy.optimize import _minpack2 as minpack2    # noqa: F401
+from ._dcsrch import DCSRCH
+import numpy as np
+
+__all__ = ['LineSearchWarning', 'line_search_wolfe1', 'line_search_wolfe2',
+           'scalar_search_wolfe1', 'scalar_search_wolfe2',
+           'line_search_armijo']
+
+class LineSearchWarning(RuntimeWarning):
+    pass
+
+
+def _check_c1_c2(c1, c2):
+    if not (0 < c1 < c2 < 1):
+        raise ValueError("'c1' and 'c2' do not satisfy"
+                         "'0 < c1 < c2 < 1'.")
+
+
+#------------------------------------------------------------------------------
+# Minpack's Wolfe line and scalar searches
+#------------------------------------------------------------------------------
+
+def line_search_wolfe1(f, fprime, xk, pk, gfk=None,
+                       old_fval=None, old_old_fval=None,
+                       args=(), c1=1e-4, c2=0.9, amax=50, amin=1e-8,
+                       xtol=1e-14):
+    """
+    As `scalar_search_wolfe1` but do a line search to direction `pk`
+
+    Parameters
+    ----------
+    f : callable
+        Function `f(x)`
+    fprime : callable
+        Gradient of `f`
+    xk : array_like
+        Current point
+    pk : array_like
+        Search direction
+    gfk : array_like, optional
+        Gradient of `f` at point `xk`
+    old_fval : float, optional
+        Value of `f` at point `xk`
+    old_old_fval : float, optional
+        Value of `f` at point preceding `xk`
+
+    The rest of the parameters are the same as for `scalar_search_wolfe1`.
+
+    Returns
+    -------
+    stp, f_count, g_count, fval, old_fval
+        As in `line_search_wolfe1`
+    gval : array
+        Gradient of `f` at the final point
+
+    Notes
+    -----
+    Parameters `c1` and `c2` must satisfy ``0 < c1 < c2 < 1``.
+
+    """
+    if gfk is None:
+        gfk = fprime(xk, *args)
+
+    gval = [gfk]
+    gc = [0]
+    fc = [0]
+
+    def phi(s):
+        fc[0] += 1
+        return f(xk + s*pk, *args)
+
+    def derphi(s):
+        gval[0] = fprime(xk + s*pk, *args)
+        gc[0] += 1
+        return np.dot(gval[0], pk)
+
+    derphi0 = np.dot(gfk, pk)
+
+    stp, fval, old_fval = scalar_search_wolfe1(
+            phi, derphi, old_fval, old_old_fval, derphi0,
+            c1=c1, c2=c2, amax=amax, amin=amin, xtol=xtol)
+
+    return stp, fc[0], gc[0], fval, old_fval, gval[0]
+
+
+def scalar_search_wolfe1(phi, derphi, phi0=None, old_phi0=None, derphi0=None,
+                         c1=1e-4, c2=0.9,
+                         amax=50, amin=1e-8, xtol=1e-14):
+    """
+    Scalar function search for alpha that satisfies strong Wolfe conditions
+
+    alpha > 0 is assumed to be a descent direction.
+
+    Parameters
+    ----------
+    phi : callable phi(alpha)
+        Function at point `alpha`
+    derphi : callable phi'(alpha)
+        Objective function derivative. Returns a scalar.
+    phi0 : float, optional
+        Value of phi at 0
+    old_phi0 : float, optional
+        Value of phi at previous point
+    derphi0 : float, optional
+        Value derphi at 0
+    c1 : float, optional
+        Parameter for Armijo condition rule.
+    c2 : float, optional
+        Parameter for curvature condition rule.
+    amax, amin : float, optional
+        Maximum and minimum step size
+    xtol : float, optional
+        Relative tolerance for an acceptable step.
+
+    Returns
+    -------
+    alpha : float
+        Step size, or None if no suitable step was found
+    phi : float
+        Value of `phi` at the new point `alpha`
+    phi0 : float
+        Value of `phi` at `alpha=0`
+
+    Notes
+    -----
+    Uses routine DCSRCH from MINPACK.
+    
+    Parameters `c1` and `c2` must satisfy ``0 < c1 < c2 < 1`` as described in [1]_.
+
+    References
+    ----------
+    
+    .. [1] Nocedal, J., & Wright, S. J. (2006). Numerical optimization.
+       In Springer Series in Operations Research and Financial Engineering.
+       (Springer Series in Operations Research and Financial Engineering).
+       Springer Nature.
+
+    """
+    _check_c1_c2(c1, c2)
+
+    if phi0 is None:
+        phi0 = phi(0.)
+    if derphi0 is None:
+        derphi0 = derphi(0.)
+
+    if old_phi0 is not None and derphi0 != 0:
+        alpha1 = min(1.0, 1.01*2*(phi0 - old_phi0)/derphi0)
+        if alpha1 < 0:
+            alpha1 = 1.0
+    else:
+        alpha1 = 1.0
+
+    maxiter = 100
+
+    dcsrch = DCSRCH(phi, derphi, c1, c2, xtol, amin, amax)
+    stp, phi1, phi0, task = dcsrch(
+        alpha1, phi0=phi0, derphi0=derphi0, maxiter=maxiter
+    )
+
+    return stp, phi1, phi0
+
+
+line_search = line_search_wolfe1
+
+
+#------------------------------------------------------------------------------
+# Pure-Python Wolfe line and scalar searches
+#------------------------------------------------------------------------------
+
+# Note: `line_search_wolfe2` is the public `scipy.optimize.line_search`
+
+def line_search_wolfe2(f, myfprime, xk, pk, gfk=None, old_fval=None,
+                       old_old_fval=None, args=(), c1=1e-4, c2=0.9, amax=None,
+                       extra_condition=None, maxiter=10):
+    """Find alpha that satisfies strong Wolfe conditions.
+
+    Parameters
+    ----------
+    f : callable f(x,*args)
+        Objective function.
+    myfprime : callable f'(x,*args)
+        Objective function gradient.
+    xk : ndarray
+        Starting point.
+    pk : ndarray
+        Search direction. The search direction must be a descent direction
+        for the algorithm to converge.
+    gfk : ndarray, optional
+        Gradient value for x=xk (xk being the current parameter
+        estimate). Will be recomputed if omitted.
+    old_fval : float, optional
+        Function value for x=xk. Will be recomputed if omitted.
+    old_old_fval : float, optional
+        Function value for the point preceding x=xk.
+    args : tuple, optional
+        Additional arguments passed to objective function.
+    c1 : float, optional
+        Parameter for Armijo condition rule.
+    c2 : float, optional
+        Parameter for curvature condition rule.
+    amax : float, optional
+        Maximum step size
+    extra_condition : callable, optional
+        A callable of the form ``extra_condition(alpha, x, f, g)``
+        returning a boolean. Arguments are the proposed step ``alpha``
+        and the corresponding ``x``, ``f`` and ``g`` values. The line search
+        accepts the value of ``alpha`` only if this
+        callable returns ``True``. If the callable returns ``False``
+        for the step length, the algorithm will continue with
+        new iterates. The callable is only called for iterates
+        satisfying the strong Wolfe conditions.
+    maxiter : int, optional
+        Maximum number of iterations to perform.
+
+    Returns
+    -------
+    alpha : float or None
+        Alpha for which ``x_new = x0 + alpha * pk``,
+        or None if the line search algorithm did not converge.
+    fc : int
+        Number of function evaluations made.
+    gc : int
+        Number of gradient evaluations made.
+    new_fval : float or None
+        New function value ``f(x_new)=f(x0+alpha*pk)``,
+        or None if the line search algorithm did not converge.
+    old_fval : float
+        Old function value ``f(x0)``.
+    new_slope : float or None
+        The local slope along the search direction at the
+        new value ``<myfprime(x_new), pk>``,
+        or None if the line search algorithm did not converge.
+
+
+    Notes
+    -----
+    Uses the line search algorithm to enforce strong Wolfe
+    conditions. See Wright and Nocedal, 'Numerical Optimization',
+    1999, pp. 59-61.
+
+    The search direction `pk` must be a descent direction (e.g.
+    ``-myfprime(xk)``) to find a step length that satisfies the strong Wolfe
+    conditions. If the search direction is not a descent direction (e.g.
+    ``myfprime(xk)``), then `alpha`, `new_fval`, and `new_slope` will be None.
+
+    Examples
+    --------
+    >>> import numpy as np
+    >>> from scipy.optimize import line_search
+
+    A objective function and its gradient are defined.
+
+    >>> def obj_func(x):
+    ...     return (x[0])**2+(x[1])**2
+    >>> def obj_grad(x):
+    ...     return [2*x[0], 2*x[1]]
+
+    We can find alpha that satisfies strong Wolfe conditions.
+
+    >>> start_point = np.array([1.8, 1.7])
+    >>> search_gradient = np.array([-1.0, -1.0])
+    >>> line_search(obj_func, obj_grad, start_point, search_gradient)
+    (1.0, 2, 1, 1.1300000000000001, 6.13, [1.6, 1.4])
+
+    """
+    fc = [0]
+    gc = [0]
+    gval = [None]
+    gval_alpha = [None]
+
+    def phi(alpha):
+        fc[0] += 1
+        return f(xk + alpha * pk, *args)
+
+    fprime = myfprime
+
+    def derphi(alpha):
+        gc[0] += 1
+        gval[0] = fprime(xk + alpha * pk, *args)  # store for later use
+        gval_alpha[0] = alpha
+        return np.dot(gval[0], pk)
+
+    if gfk is None:
+        gfk = fprime(xk, *args)
+    derphi0 = np.dot(gfk, pk)
+
+    if extra_condition is not None:
+        # Add the current gradient as argument, to avoid needless
+        # re-evaluation
+        def extra_condition2(alpha, phi):
+            if gval_alpha[0] != alpha:
+                derphi(alpha)
+            x = xk + alpha * pk
+            return extra_condition(alpha, x, phi, gval[0])
+    else:
+        extra_condition2 = None
+
+    alpha_star, phi_star, old_fval, derphi_star = scalar_search_wolfe2(
+            phi, derphi, old_fval, old_old_fval, derphi0, c1, c2, amax,
+            extra_condition2, maxiter=maxiter)
+
+    if derphi_star is None:
+        warn('The line search algorithm did not converge',
+             LineSearchWarning, stacklevel=2)
+    else:
+        # derphi_star is a number (derphi) -- so use the most recently
+        # calculated gradient used in computing it derphi = gfk*pk
+        # this is the gradient at the next step no need to compute it
+        # again in the outer loop.
+        derphi_star = gval[0]
+
+    return alpha_star, fc[0], gc[0], phi_star, old_fval, derphi_star
+
+
+def scalar_search_wolfe2(phi, derphi, phi0=None,
+                         old_phi0=None, derphi0=None,
+                         c1=1e-4, c2=0.9, amax=None,
+                         extra_condition=None, maxiter=10):
+    """Find alpha that satisfies strong Wolfe conditions.
+
+    alpha > 0 is assumed to be a descent direction.
+
+    Parameters
+    ----------
+    phi : callable phi(alpha)
+        Objective scalar function.
+    derphi : callable phi'(alpha)
+        Objective function derivative. Returns a scalar.
+    phi0 : float, optional
+        Value of phi at 0.
+    old_phi0 : float, optional
+        Value of phi at previous point.
+    derphi0 : float, optional
+        Value of derphi at 0
+    c1 : float, optional
+        Parameter for Armijo condition rule.
+    c2 : float, optional
+        Parameter for curvature condition rule.
+    amax : float, optional
+        Maximum step size.
+    extra_condition : callable, optional
+        A callable of the form ``extra_condition(alpha, phi_value)``
+        returning a boolean. The line search accepts the value
+        of ``alpha`` only if this callable returns ``True``.
+        If the callable returns ``False`` for the step length,
+        the algorithm will continue with new iterates.
+        The callable is only called for iterates satisfying
+        the strong Wolfe conditions.
+    maxiter : int, optional
+        Maximum number of iterations to perform.
+
+    Returns
+    -------
+    alpha_star : float or None
+        Best alpha, or None if the line search algorithm did not converge.
+    phi_star : float
+        phi at alpha_star.
+    phi0 : float
+        phi at 0.
+    derphi_star : float or None
+        derphi at alpha_star, or None if the line search algorithm
+        did not converge.
+
+    Notes
+    -----
+    Uses the line search algorithm to enforce strong Wolfe
+    conditions. See Wright and Nocedal, 'Numerical Optimization',
+    1999, pp. 59-61.
+
+    """
+    _check_c1_c2(c1, c2)
+
+    if phi0 is None:
+        phi0 = phi(0.)
+
+    if derphi0 is None:
+        derphi0 = derphi(0.)
+
+    alpha0 = 0
+    if old_phi0 is not None and derphi0 != 0:
+        alpha1 = min(1.0, 1.01*2*(phi0 - old_phi0)/derphi0)
+    else:
+        alpha1 = 1.0
+
+    if alpha1 < 0:
+        alpha1 = 1.0
+
+    if amax is not None:
+        alpha1 = min(alpha1, amax)
+
+    phi_a1 = phi(alpha1)
+    #derphi_a1 = derphi(alpha1) evaluated below
+
+    phi_a0 = phi0
+    derphi_a0 = derphi0
+
+    if extra_condition is None:
+        def extra_condition(alpha, phi):
+            return True
+
+    for i in range(maxiter):
+        if alpha1 == 0 or (amax is not None and alpha0 > amax):
+            # alpha1 == 0: This shouldn't happen. Perhaps the increment has
+            # slipped below machine precision?
+            alpha_star = None
+            phi_star = phi0
+            phi0 = old_phi0
+            derphi_star = None
+
+            if alpha1 == 0:
+                msg = 'Rounding errors prevent the line search from converging'
+            else:
+                msg = "The line search algorithm could not find a solution " + \
+                      "less than or equal to amax: %s" % amax
+
+            warn(msg, LineSearchWarning, stacklevel=2)
+            break
+
+        not_first_iteration = i > 0
+        if (phi_a1 > phi0 + c1 * alpha1 * derphi0) or \
+           ((phi_a1 >= phi_a0) and not_first_iteration):
+            alpha_star, phi_star, derphi_star = \
+                        _zoom(alpha0, alpha1, phi_a0,
+                              phi_a1, derphi_a0, phi, derphi,
+                              phi0, derphi0, c1, c2, extra_condition)
+            break
+
+        derphi_a1 = derphi(alpha1)
+        if (abs(derphi_a1) <= -c2*derphi0):
+            if extra_condition(alpha1, phi_a1):
+                alpha_star = alpha1
+                phi_star = phi_a1
+                derphi_star = derphi_a1
+                break
+
+        if (derphi_a1 >= 0):
+            alpha_star, phi_star, derphi_star = \
+                        _zoom(alpha1, alpha0, phi_a1,
+                              phi_a0, derphi_a1, phi, derphi,
+                              phi0, derphi0, c1, c2, extra_condition)
+            break
+
+        alpha2 = 2 * alpha1  # increase by factor of two on each iteration
+        if amax is not None:
+            alpha2 = min(alpha2, amax)
+        alpha0 = alpha1
+        alpha1 = alpha2
+        phi_a0 = phi_a1
+        phi_a1 = phi(alpha1)
+        derphi_a0 = derphi_a1
+
+    else:
+        # stopping test maxiter reached
+        alpha_star = alpha1
+        phi_star = phi_a1
+        derphi_star = None
+        warn('The line search algorithm did not converge',
+             LineSearchWarning, stacklevel=2)
+
+    return alpha_star, phi_star, phi0, derphi_star
+
+
+def _cubicmin(a, fa, fpa, b, fb, c, fc):
+    """
+    Finds the minimizer for a cubic polynomial that goes through the
+    points (a,fa), (b,fb), and (c,fc) with derivative at a of fpa.
+
+    If no minimizer can be found, return None.
+
+    """
+    # f(x) = A *(x-a)^3 + B*(x-a)^2 + C*(x-a) + D
+
+    with np.errstate(divide='raise', over='raise', invalid='raise'):
+        try:
+            C = fpa
+            db = b - a
+            dc = c - a
+            denom = (db * dc) ** 2 * (db - dc)
+            d1 = np.empty((2, 2))
+            d1[0, 0] = dc ** 2
+            d1[0, 1] = -db ** 2
+            d1[1, 0] = -dc ** 3
+            d1[1, 1] = db ** 3
+            [A, B] = np.dot(d1, np.asarray([fb - fa - C * db,
+                                            fc - fa - C * dc]).flatten())
+            A /= denom
+            B /= denom
+            radical = B * B - 3 * A * C
+            xmin = a + (-B + np.sqrt(radical)) / (3 * A)
+        except ArithmeticError:
+            return None
+    if not np.isfinite(xmin):
+        return None
+    return xmin
+
+
+def _quadmin(a, fa, fpa, b, fb):
+    """
+    Finds the minimizer for a quadratic polynomial that goes through
+    the points (a,fa), (b,fb) with derivative at a of fpa.
+
+    """
+    # f(x) = B*(x-a)^2 + C*(x-a) + D
+    with np.errstate(divide='raise', over='raise', invalid='raise'):
+        try:
+            D = fa
+            C = fpa
+            db = b - a * 1.0
+            B = (fb - D - C * db) / (db * db)
+            xmin = a - C / (2.0 * B)
+        except ArithmeticError:
+            return None
+    if not np.isfinite(xmin):
+        return None
+    return xmin
+
+
+def _zoom(a_lo, a_hi, phi_lo, phi_hi, derphi_lo,
+          phi, derphi, phi0, derphi0, c1, c2, extra_condition):
+    """Zoom stage of approximate linesearch satisfying strong Wolfe conditions.
+
+    Part of the optimization algorithm in `scalar_search_wolfe2`.
+
+    Notes
+    -----
+    Implements Algorithm 3.6 (zoom) in Wright and Nocedal,
+    'Numerical Optimization', 1999, pp. 61.
+
+    """
+
+    maxiter = 10
+    i = 0
+    delta1 = 0.2  # cubic interpolant check
+    delta2 = 0.1  # quadratic interpolant check
+    phi_rec = phi0
+    a_rec = 0
+    while True:
+        # interpolate to find a trial step length between a_lo and
+        # a_hi Need to choose interpolation here. Use cubic
+        # interpolation and then if the result is within delta *
+        # dalpha or outside of the interval bounded by a_lo or a_hi
+        # then use quadratic interpolation, if the result is still too
+        # close, then use bisection
+
+        dalpha = a_hi - a_lo
+        if dalpha < 0:
+            a, b = a_hi, a_lo
+        else:
+            a, b = a_lo, a_hi
+
+        # minimizer of cubic interpolant
+        # (uses phi_lo, derphi_lo, phi_hi, and the most recent value of phi)
+        #
+        # if the result is too close to the end points (or out of the
+        # interval), then use quadratic interpolation with phi_lo,
+        # derphi_lo and phi_hi if the result is still too close to the
+        # end points (or out of the interval) then use bisection
+
+        if (i > 0):
+            cchk = delta1 * dalpha
+            a_j = _cubicmin(a_lo, phi_lo, derphi_lo, a_hi, phi_hi,
+                            a_rec, phi_rec)
+        if (i == 0) or (a_j is None) or (a_j > b - cchk) or (a_j < a + cchk):
+            qchk = delta2 * dalpha
+            a_j = _quadmin(a_lo, phi_lo, derphi_lo, a_hi, phi_hi)
+            if (a_j is None) or (a_j > b-qchk) or (a_j < a+qchk):
+                a_j = a_lo + 0.5*dalpha
+
+        # Check new value of a_j
+
+        phi_aj = phi(a_j)
+        if (phi_aj > phi0 + c1*a_j*derphi0) or (phi_aj >= phi_lo):
+            phi_rec = phi_hi
+            a_rec = a_hi
+            a_hi = a_j
+            phi_hi = phi_aj
+        else:
+            derphi_aj = derphi(a_j)
+            if abs(derphi_aj) <= -c2*derphi0 and extra_condition(a_j, phi_aj):
+                a_star = a_j
+                val_star = phi_aj
+                valprime_star = derphi_aj
+                break
+            if derphi_aj*(a_hi - a_lo) >= 0:
+                phi_rec = phi_hi
+                a_rec = a_hi
+                a_hi = a_lo
+                phi_hi = phi_lo
+            else:
+                phi_rec = phi_lo
+                a_rec = a_lo
+            a_lo = a_j
+            phi_lo = phi_aj
+            derphi_lo = derphi_aj
+        i += 1
+        if (i > maxiter):
+            # Failed to find a conforming step size
+            a_star = None
+            val_star = None
+            valprime_star = None
+            break
+    return a_star, val_star, valprime_star
+
+
+#------------------------------------------------------------------------------
+# Armijo line and scalar searches
+#------------------------------------------------------------------------------
+
+def line_search_armijo(f, xk, pk, gfk, old_fval, args=(), c1=1e-4, alpha0=1):
+    """Minimize over alpha, the function ``f(xk+alpha pk)``.
+
+    Parameters
+    ----------
+    f : callable
+        Function to be minimized.
+    xk : array_like
+        Current point.
+    pk : array_like
+        Search direction.
+    gfk : array_like
+        Gradient of `f` at point `xk`.
+    old_fval : float
+        Value of `f` at point `xk`.
+    args : tuple, optional
+        Optional arguments.
+    c1 : float, optional
+        Value to control stopping criterion.
+    alpha0 : scalar, optional
+        Value of `alpha` at start of the optimization.
+
+    Returns
+    -------
+    alpha
+    f_count
+    f_val_at_alpha
+
+    Notes
+    -----
+    Uses the interpolation algorithm (Armijo backtracking) as suggested by
+    Wright and Nocedal in 'Numerical Optimization', 1999, pp. 56-57
+
+    """
+    xk = np.atleast_1d(xk)
+    fc = [0]
+
+    def phi(alpha1):
+        fc[0] += 1
+        return f(xk + alpha1*pk, *args)
+
+    if old_fval is None:
+        phi0 = phi(0.)
+    else:
+        phi0 = old_fval  # compute f(xk) -- done in past loop
+
+    derphi0 = np.dot(gfk, pk)
+    alpha, phi1 = scalar_search_armijo(phi, phi0, derphi0, c1=c1,
+                                       alpha0=alpha0)
+    return alpha, fc[0], phi1
+
+
+def line_search_BFGS(f, xk, pk, gfk, old_fval, args=(), c1=1e-4, alpha0=1):
+    """
+    Compatibility wrapper for `line_search_armijo`
+    """
+    r = line_search_armijo(f, xk, pk, gfk, old_fval, args=args, c1=c1,
+                           alpha0=alpha0)
+    return r[0], r[1], 0, r[2]
+
+
+def scalar_search_armijo(phi, phi0, derphi0, c1=1e-4, alpha0=1, amin=0):
+    """Minimize over alpha, the function ``phi(alpha)``.
+
+    Uses the interpolation algorithm (Armijo backtracking) as suggested by
+    Wright and Nocedal in 'Numerical Optimization', 1999, pp. 56-57
+
+    alpha > 0 is assumed to be a descent direction.
+
+    Returns
+    -------
+    alpha
+    phi1
+
+    """
+    phi_a0 = phi(alpha0)
+    if phi_a0 <= phi0 + c1*alpha0*derphi0:
+        return alpha0, phi_a0
+
+    # Otherwise, compute the minimizer of a quadratic interpolant:
+
+    alpha1 = -(derphi0) * alpha0**2 / 2.0 / (phi_a0 - phi0 - derphi0 * alpha0)
+    phi_a1 = phi(alpha1)
+
+    if (phi_a1 <= phi0 + c1*alpha1*derphi0):
+        return alpha1, phi_a1
+
+    # Otherwise, loop with cubic interpolation until we find an alpha which
+    # satisfies the first Wolfe condition (since we are backtracking, we will
+    # assume that the value of alpha is not too small and satisfies the second
+    # condition.
+
+    while alpha1 > amin:       # we are assuming alpha>0 is a descent direction
+        factor = alpha0**2 * alpha1**2 * (alpha1-alpha0)
+        a = alpha0**2 * (phi_a1 - phi0 - derphi0*alpha1) - \
+            alpha1**2 * (phi_a0 - phi0 - derphi0*alpha0)
+        a = a / factor
+        b = -alpha0**3 * (phi_a1 - phi0 - derphi0*alpha1) + \
+            alpha1**3 * (phi_a0 - phi0 - derphi0*alpha0)
+        b = b / factor
+
+        alpha2 = (-b + np.sqrt(abs(b**2 - 3 * a * derphi0))) / (3.0*a)
+        phi_a2 = phi(alpha2)
+
+        if (phi_a2 <= phi0 + c1*alpha2*derphi0):
+            return alpha2, phi_a2
+
+        if (alpha1 - alpha2) > alpha1 / 2.0 or (1 - alpha2/alpha1) < 0.96:
+            alpha2 = alpha1 / 2.0
+
+        alpha0 = alpha1
+        alpha1 = alpha2
+        phi_a0 = phi_a1
+        phi_a1 = phi_a2
+
+    # Failed to find a suitable step length
+    return None, phi_a1
+
+
+#------------------------------------------------------------------------------
+# Non-monotone line search for DF-SANE
+#------------------------------------------------------------------------------
+
+def _nonmonotone_line_search_cruz(f, x_k, d, prev_fs, eta,
+                                  gamma=1e-4, tau_min=0.1, tau_max=0.5):
+    """
+    Nonmonotone backtracking line search as described in [1]_
+
+    Parameters
+    ----------
+    f : callable
+        Function returning a tuple ``(f, F)`` where ``f`` is the value
+        of a merit function and ``F`` the residual.
+    x_k : ndarray
+        Initial position.
+    d : ndarray
+        Search direction.
+    prev_fs : float
+        List of previous merit function values. Should have ``len(prev_fs) <= M``
+        where ``M`` is the nonmonotonicity window parameter.
+    eta : float
+        Allowed merit function increase, see [1]_
+    gamma, tau_min, tau_max : float, optional
+        Search parameters, see [1]_
+
+    Returns
+    -------
+    alpha : float
+        Step length
+    xp : ndarray
+        Next position
+    fp : float
+        Merit function value at next position
+    Fp : ndarray
+        Residual at next position
+
+    References
+    ----------
+    [1] "Spectral residual method without gradient information for solving
+        large-scale nonlinear systems of equations." W. La Cruz,
+        J.M. Martinez, M. Raydan. Math. Comp. **75**, 1429 (2006).
+
+    """
+    f_k = prev_fs[-1]
+    f_bar = max(prev_fs)
+
+    alpha_p = 1
+    alpha_m = 1
+    alpha = 1
+
+    while True:
+        xp = x_k + alpha_p * d
+        fp, Fp = f(xp)
+
+        if fp <= f_bar + eta - gamma * alpha_p**2 * f_k:
+            alpha = alpha_p
+            break
+
+        alpha_tp = alpha_p**2 * f_k / (fp + (2*alpha_p - 1)*f_k)
+
+        xp = x_k - alpha_m * d
+        fp, Fp = f(xp)
+
+        if fp <= f_bar + eta - gamma * alpha_m**2 * f_k:
+            alpha = -alpha_m
+            break
+
+        alpha_tm = alpha_m**2 * f_k / (fp + (2*alpha_m - 1)*f_k)
+
+        alpha_p = np.clip(alpha_tp, tau_min * alpha_p, tau_max * alpha_p)
+        alpha_m = np.clip(alpha_tm, tau_min * alpha_m, tau_max * alpha_m)
+
+    return alpha, xp, fp, Fp
+
+
+def _nonmonotone_line_search_cheng(f, x_k, d, f_k, C, Q, eta,
+                                   gamma=1e-4, tau_min=0.1, tau_max=0.5,
+                                   nu=0.85):
+    """
+    Nonmonotone line search from [1]
+
+    Parameters
+    ----------
+    f : callable
+        Function returning a tuple ``(f, F)`` where ``f`` is the value
+        of a merit function and ``F`` the residual.
+    x_k : ndarray
+        Initial position.
+    d : ndarray
+        Search direction.
+    f_k : float
+        Initial merit function value.
+    C, Q : float
+        Control parameters. On the first iteration, give values
+        Q=1.0, C=f_k
+    eta : float
+        Allowed merit function increase, see [1]_
+    nu, gamma, tau_min, tau_max : float, optional
+        Search parameters, see [1]_
+
+    Returns
+    -------
+    alpha : float
+        Step length
+    xp : ndarray
+        Next position
+    fp : float
+        Merit function value at next position
+    Fp : ndarray
+        Residual at next position
+    C : float
+        New value for the control parameter C
+    Q : float
+        New value for the control parameter Q
+
+    References
+    ----------
+    .. [1] W. Cheng & D.-H. Li, ''A derivative-free nonmonotone line
+           search and its application to the spectral residual
+           method'', IMA J. Numer. Anal. 29, 814 (2009).
+
+    """
+    alpha_p = 1
+    alpha_m = 1
+    alpha = 1
+
+    while True:
+        xp = x_k + alpha_p * d
+        fp, Fp = f(xp)
+
+        if fp <= C + eta - gamma * alpha_p**2 * f_k:
+            alpha = alpha_p
+            break
+
+        alpha_tp = alpha_p**2 * f_k / (fp + (2*alpha_p - 1)*f_k)
+
+        xp = x_k - alpha_m * d
+        fp, Fp = f(xp)
+
+        if fp <= C + eta - gamma * alpha_m**2 * f_k:
+            alpha = -alpha_m
+            break
+
+        alpha_tm = alpha_m**2 * f_k / (fp + (2*alpha_m - 1)*f_k)
+
+        alpha_p = np.clip(alpha_tp, tau_min * alpha_p, tau_max * alpha_p)
+        alpha_m = np.clip(alpha_tm, tau_min * alpha_m, tau_max * alpha_m)
+
+    # Update C and Q
+    Q_next = nu * Q + 1
+    C = (nu * Q * (C + eta) + fp) / Q_next
+    Q = Q_next
+
+    return alpha, xp, fp, Fp, C, Q

env-llmeval/lib/python3.10/site-packages/scipy/optimize/_linprog.py

@@ -0,0 +1,714 @@
+"""
+A top-level linear programming interface.
+
+.. versionadded:: 0.15.0
+
+Functions
+---------
+.. autosummary::
+   :toctree: generated/
+
+    linprog
+    linprog_verbose_callback
+    linprog_terse_callback
+
+"""
+
+import numpy as np
+
+from ._optimize import OptimizeResult, OptimizeWarning
+from warnings import warn
+from ._linprog_highs import _linprog_highs
+from ._linprog_ip import _linprog_ip
+from ._linprog_simplex import _linprog_simplex
+from ._linprog_rs import _linprog_rs
+from ._linprog_doc import (_linprog_highs_doc, _linprog_ip_doc,  # noqa: F401
+                           _linprog_rs_doc, _linprog_simplex_doc,
+                           _linprog_highs_ipm_doc, _linprog_highs_ds_doc)
+from ._linprog_util import (
+    _parse_linprog, _presolve, _get_Abc, _LPProblem, _autoscale,
+    _postsolve, _check_result, _display_summary)
+from copy import deepcopy
+
+__all__ = ['linprog', 'linprog_verbose_callback', 'linprog_terse_callback']
+
+__docformat__ = "restructuredtext en"
+
+LINPROG_METHODS = [
+    'simplex', 'revised simplex', 'interior-point', 'highs', 'highs-ds', 'highs-ipm'
+]
+
+
+def linprog_verbose_callback(res):
+    """
+    A sample callback function demonstrating the linprog callback interface.
+    This callback produces detailed output to sys.stdout before each iteration
+    and after the final iteration of the simplex algorithm.
+
+    Parameters
+    ----------
+    res : A `scipy.optimize.OptimizeResult` consisting of the following fields:
+
+        x : 1-D array
+            The independent variable vector which optimizes the linear
+            programming problem.
+        fun : float
+            Value of the objective function.
+        success : bool
+            True if the algorithm succeeded in finding an optimal solution.
+        slack : 1-D array
+            The values of the slack variables. Each slack variable corresponds
+            to an inequality constraint. If the slack is zero, then the
+            corresponding constraint is active.
+        con : 1-D array
+            The (nominally zero) residuals of the equality constraints, that is,
+            ``b - A_eq @ x``
+        phase : int
+            The phase of the optimization being executed. In phase 1 a basic
+            feasible solution is sought and the T has an additional row
+            representing an alternate objective function.
+        status : int
+            An integer representing the exit status of the optimization::
+
+                 0 : Optimization terminated successfully
+                 1 : Iteration limit reached
+                 2 : Problem appears to be infeasible
+                 3 : Problem appears to be unbounded
+                 4 : Serious numerical difficulties encountered
+
+        nit : int
+            The number of iterations performed.
+        message : str
+            A string descriptor of the exit status of the optimization.
+    """
+    x = res['x']
+    fun = res['fun']
+    phase = res['phase']
+    status = res['status']
+    nit = res['nit']
+    message = res['message']
+    complete = res['complete']
+
+    saved_printoptions = np.get_printoptions()
+    np.set_printoptions(linewidth=500,
+                        formatter={'float': lambda x: f"{x: 12.4f}"})
+    if status:
+        print('--------- Simplex Early Exit -------\n')
+        print(f'The simplex method exited early with status {status:d}')
+        print(message)
+    elif complete:
+        print('--------- Simplex Complete --------\n')
+        print(f'Iterations required: {nit}')
+    else:
+        print(f'--------- Iteration {nit:d}  ---------\n')
+
+    if nit > 0:
+        if phase == 1:
+            print('Current Pseudo-Objective Value:')
+        else:
+            print('Current Objective Value:')
+        print('f = ', fun)
+        print()
+        print('Current Solution Vector:')
+        print('x = ', x)
+        print()
+
+    np.set_printoptions(**saved_printoptions)
+
+
+def linprog_terse_callback(res):
+    """
+    A sample callback function demonstrating the linprog callback interface.
+    This callback produces brief output to sys.stdout before each iteration
+    and after the final iteration of the simplex algorithm.
+
+    Parameters
+    ----------
+    res : A `scipy.optimize.OptimizeResult` consisting of the following fields:
+
+        x : 1-D array
+            The independent variable vector which optimizes the linear
+            programming problem.
+        fun : float
+            Value of the objective function.
+        success : bool
+            True if the algorithm succeeded in finding an optimal solution.
+        slack : 1-D array
+            The values of the slack variables. Each slack variable corresponds
+            to an inequality constraint. If the slack is zero, then the
+            corresponding constraint is active.
+        con : 1-D array
+            The (nominally zero) residuals of the equality constraints, that is,
+            ``b - A_eq @ x``.
+        phase : int
+            The phase of the optimization being executed. In phase 1 a basic
+            feasible solution is sought and the T has an additional row
+            representing an alternate objective function.
+        status : int
+            An integer representing the exit status of the optimization::
+
+                 0 : Optimization terminated successfully
+                 1 : Iteration limit reached
+                 2 : Problem appears to be infeasible
+                 3 : Problem appears to be unbounded
+                 4 : Serious numerical difficulties encountered
+
+        nit : int
+            The number of iterations performed.
+        message : str
+            A string descriptor of the exit status of the optimization.
+    """
+    nit = res['nit']
+    x = res['x']
+
+    if nit == 0:
+        print("Iter:   X:")
+    print(f"{nit: <5d}   ", end="")
+    print(x)
+
+
+def linprog(c, A_ub=None, b_ub=None, A_eq=None, b_eq=None,
+            bounds=(0, None), method='highs', callback=None,
+            options=None, x0=None, integrality=None):
+    r"""
+    Linear programming: minimize a linear objective function subject to linear
+    equality and inequality constraints.
+
+    Linear programming solves problems of the following form:
+
+    .. math::
+
+        \min_x \ & c^T x \\
+        \mbox{such that} \ & A_{ub} x \leq b_{ub},\\
+        & A_{eq} x = b_{eq},\\
+        & l \leq x \leq u ,
+
+    where :math:`x` is a vector of decision variables; :math:`c`,
+    :math:`b_{ub}`, :math:`b_{eq}`, :math:`l`, and :math:`u` are vectors; and
+    :math:`A_{ub}` and :math:`A_{eq}` are matrices.
+
+    Alternatively, that's:
+
+        - minimize ::
+
+            c @ x
+
+        - such that ::
+
+            A_ub @ x <= b_ub
+            A_eq @ x == b_eq
+            lb <= x <= ub
+
+    Note that by default ``lb = 0`` and ``ub = None``. Other bounds can be
+    specified with ``bounds``.
+
+    Parameters
+    ----------
+    c : 1-D array
+        The coefficients of the linear objective function to be minimized.
+    A_ub : 2-D array, optional
+        The inequality constraint matrix. Each row of ``A_ub`` specifies the
+        coefficients of a linear inequality constraint on ``x``.
+    b_ub : 1-D array, optional
+        The inequality constraint vector. Each element represents an
+        upper bound on the corresponding value of ``A_ub @ x``.
+    A_eq : 2-D array, optional
+        The equality constraint matrix. Each row of ``A_eq`` specifies the
+        coefficients of a linear equality constraint on ``x``.
+    b_eq : 1-D array, optional
+        The equality constraint vector. Each element of ``A_eq @ x`` must equal
+        the corresponding element of ``b_eq``.
+    bounds : sequence, optional
+        A sequence of ``(min, max)`` pairs for each element in ``x``, defining
+        the minimum and maximum values of that decision variable.
+        If a single tuple ``(min, max)`` is provided, then ``min`` and ``max``
+        will serve as bounds for all decision variables.
+        Use ``None`` to indicate that there is no bound. For instance, the
+        default bound ``(0, None)`` means that all decision variables are
+        non-negative, and the pair ``(None, None)`` means no bounds at all,
+        i.e. all variables are allowed to be any real.
+    method : str, optional
+        The algorithm used to solve the standard form problem.
+        :ref:`'highs' <optimize.linprog-highs>` (default),
+        :ref:`'highs-ds' <optimize.linprog-highs-ds>`,
+        :ref:`'highs-ipm' <optimize.linprog-highs-ipm>`,
+        :ref:`'interior-point' <optimize.linprog-interior-point>` (legacy),
+        :ref:`'revised simplex' <optimize.linprog-revised_simplex>` (legacy),
+        and
+        :ref:`'simplex' <optimize.linprog-simplex>` (legacy) are supported.
+        The legacy methods are deprecated and will be removed in SciPy 1.11.0.
+    callback : callable, optional
+        If a callback function is provided, it will be called at least once per
+        iteration of the algorithm. The callback function must accept a single
+        `scipy.optimize.OptimizeResult` consisting of the following fields:
+
+        x : 1-D array
+            The current solution vector.
+        fun : float
+            The current value of the objective function ``c @ x``.
+        success : bool
+            ``True`` when the algorithm has completed successfully.
+        slack : 1-D array
+            The (nominally positive) values of the slack,
+            ``b_ub - A_ub @ x``.
+        con : 1-D array
+            The (nominally zero) residuals of the equality constraints,
+            ``b_eq - A_eq @ x``.
+        phase : int
+            The phase of the algorithm being executed.
+        status : int
+            An integer representing the status of the algorithm.
+
+            ``0`` : Optimization proceeding nominally.
+
+            ``1`` : Iteration limit reached.
+
+            ``2`` : Problem appears to be infeasible.
+
+            ``3`` : Problem appears to be unbounded.
+
+            ``4`` : Numerical difficulties encountered.
+
+            nit : int
+                The current iteration number.
+            message : str
+                A string descriptor of the algorithm status.
+
+        Callback functions are not currently supported by the HiGHS methods.
+
+    options : dict, optional
+        A dictionary of solver options. All methods accept the following
+        options:
+
+        maxiter : int
+            Maximum number of iterations to perform.
+            Default: see method-specific documentation.
+        disp : bool
+            Set to ``True`` to print convergence messages.
+            Default: ``False``.
+        presolve : bool
+            Set to ``False`` to disable automatic presolve.
+            Default: ``True``.
+
+        All methods except the HiGHS solvers also accept:
+
+        tol : float
+            A tolerance which determines when a residual is "close enough" to
+            zero to be considered exactly zero.
+        autoscale : bool
+            Set to ``True`` to automatically perform equilibration.
+            Consider using this option if the numerical values in the
+            constraints are separated by several orders of magnitude.
+            Default: ``False``.
+        rr : bool
+            Set to ``False`` to disable automatic redundancy removal.
+            Default: ``True``.
+        rr_method : string
+            Method used to identify and remove redundant rows from the
+            equality constraint matrix after presolve. For problems with
+            dense input, the available methods for redundancy removal are:
+
+            "SVD":
+                Repeatedly performs singular value decomposition on
+                the matrix, detecting redundant rows based on nonzeros
+                in the left singular vectors that correspond with
+                zero singular values. May be fast when the matrix is
+                nearly full rank.
+            "pivot":
+                Uses the algorithm presented in [5]_ to identify
+                redundant rows.
+            "ID":
+                Uses a randomized interpolative decomposition.
+                Identifies columns of the matrix transpose not used in
+                a full-rank interpolative decomposition of the matrix.
+            None:
+                Uses "svd" if the matrix is nearly full rank, that is,
+                the difference between the matrix rank and the number
+                of rows is less than five. If not, uses "pivot". The
+                behavior of this default is subject to change without
+                prior notice.
+
+            Default: None.
+            For problems with sparse input, this option is ignored, and the
+            pivot-based algorithm presented in [5]_ is used.
+
+        For method-specific options, see
+        :func:`show_options('linprog') <show_options>`.
+
+    x0 : 1-D array, optional
+        Guess values of the decision variables, which will be refined by
+        the optimization algorithm. This argument is currently used only by the
+        'revised simplex' method, and can only be used if `x0` represents a
+        basic feasible solution.
+
+    integrality : 1-D array or int, optional
+        Indicates the type of integrality constraint on each decision variable.
+
+        ``0`` : Continuous variable; no integrality constraint.
+
+        ``1`` : Integer variable; decision variable must be an integer
+        within `bounds`.
+
+        ``2`` : Semi-continuous variable; decision variable must be within
+        `bounds` or take value ``0``.
+
+        ``3`` : Semi-integer variable; decision variable must be an integer
+        within `bounds` or take value ``0``.
+
+        By default, all variables are continuous.
+
+        For mixed integrality constraints, supply an array of shape `c.shape`.
+        To infer a constraint on each decision variable from shorter inputs,
+        the argument will be broadcasted to `c.shape` using `np.broadcast_to`.
+
+        This argument is currently used only by the ``'highs'`` method and
+        ignored otherwise.
+
+    Returns
+    -------
+    res : OptimizeResult
+        A :class:`scipy.optimize.OptimizeResult` consisting of the fields
+        below. Note that the return types of the fields may depend on whether
+        the optimization was successful, therefore it is recommended to check
+        `OptimizeResult.status` before relying on the other fields:
+
+        x : 1-D array
+            The values of the decision variables that minimizes the
+            objective function while satisfying the constraints.
+        fun : float
+            The optimal value of the objective function ``c @ x``.
+        slack : 1-D array
+            The (nominally positive) values of the slack variables,
+            ``b_ub - A_ub @ x``.
+        con : 1-D array
+            The (nominally zero) residuals of the equality constraints,
+            ``b_eq - A_eq @ x``.
+        success : bool
+            ``True`` when the algorithm succeeds in finding an optimal
+            solution.
+        status : int
+            An integer representing the exit status of the algorithm.
+
+            ``0`` : Optimization terminated successfully.
+
+            ``1`` : Iteration limit reached.
+
+            ``2`` : Problem appears to be infeasible.
+
+            ``3`` : Problem appears to be unbounded.
+
+            ``4`` : Numerical difficulties encountered.
+
+        nit : int
+            The total number of iterations performed in all phases.
+        message : str
+            A string descriptor of the exit status of the algorithm.
+
+    See Also
+    --------
+    show_options : Additional options accepted by the solvers.
+
+    Notes
+    -----
+    This section describes the available solvers that can be selected by the
+    'method' parameter.
+
+    `'highs-ds'` and
+    `'highs-ipm'` are interfaces to the
+    HiGHS simplex and interior-point method solvers [13]_, respectively.
+    `'highs'` (default) chooses between
+    the two automatically. These are the fastest linear
+    programming solvers in SciPy, especially for large, sparse problems;
+    which of these two is faster is problem-dependent.
+    The other solvers (`'interior-point'`, `'revised simplex'`, and
+    `'simplex'`) are legacy methods and will be removed in SciPy 1.11.0.
+
+    Method *highs-ds* is a wrapper of the C++ high performance dual
+    revised simplex implementation (HSOL) [13]_, [14]_. Method *highs-ipm*
+    is a wrapper of a C++ implementation of an **i**\ nterior-\ **p**\ oint
+    **m**\ ethod [13]_; it features a crossover routine, so it is as accurate
+    as a simplex solver. Method *highs* chooses between the two automatically.
+    For new code involving `linprog`, we recommend explicitly choosing one of
+    these three method values.
+
+    .. versionadded:: 1.6.0
+
+    Method *interior-point* uses the primal-dual path following algorithm
+    as outlined in [4]_. This algorithm supports sparse constraint matrices and
+    is typically faster than the simplex methods, especially for large, sparse
+    problems. Note, however, that the solution returned may be slightly less
+    accurate than those of the simplex methods and will not, in general,
+    correspond with a vertex of the polytope defined by the constraints.
+
+    .. versionadded:: 1.0.0
+
+    Method *revised simplex* uses the revised simplex method as described in
+    [9]_, except that a factorization [11]_ of the basis matrix, rather than
+    its inverse, is efficiently maintained and used to solve the linear systems
+    at each iteration of the algorithm.
+
+    .. versionadded:: 1.3.0
+
+    Method *simplex* uses a traditional, full-tableau implementation of
+    Dantzig's simplex algorithm [1]_, [2]_ (*not* the
+    Nelder-Mead simplex). This algorithm is included for backwards
+    compatibility and educational purposes.
+
+    .. versionadded:: 0.15.0
+
+    Before applying *interior-point*, *revised simplex*, or *simplex*,
+    a presolve procedure based on [8]_ attempts
+    to identify trivial infeasibilities, trivial unboundedness, and potential
+    problem simplifications. Specifically, it checks for:
+
+    - rows of zeros in ``A_eq`` or ``A_ub``, representing trivial constraints;
+    - columns of zeros in ``A_eq`` `and` ``A_ub``, representing unconstrained
+      variables;
+    - column singletons in ``A_eq``, representing fixed variables; and
+    - column singletons in ``A_ub``, representing simple bounds.
+
+    If presolve reveals that the problem is unbounded (e.g. an unconstrained
+    and unbounded variable has negative cost) or infeasible (e.g., a row of
+    zeros in ``A_eq`` corresponds with a nonzero in ``b_eq``), the solver
+    terminates with the appropriate status code. Note that presolve terminates
+    as soon as any sign of unboundedness is detected; consequently, a problem
+    may be reported as unbounded when in reality the problem is infeasible
+    (but infeasibility has not been detected yet). Therefore, if it is
+    important to know whether the problem is actually infeasible, solve the
+    problem again with option ``presolve=False``.
+
+    If neither infeasibility nor unboundedness are detected in a single pass
+    of the presolve, bounds are tightened where possible and fixed
+    variables are removed from the problem. Then, linearly dependent rows
+    of the ``A_eq`` matrix are removed, (unless they represent an
+    infeasibility) to avoid numerical difficulties in the primary solve
+    routine. Note that rows that are nearly linearly dependent (within a
+    prescribed tolerance) may also be removed, which can change the optimal
+    solution in rare cases. If this is a concern, eliminate redundancy from
+    your problem formulation and run with option ``rr=False`` or
+    ``presolve=False``.
+
+    Several potential improvements can be made here: additional presolve
+    checks outlined in [8]_ should be implemented, the presolve routine should
+    be run multiple times (until no further simplifications can be made), and
+    more of the efficiency improvements from [5]_ should be implemented in the
+    redundancy removal routines.
+
+    After presolve, the problem is transformed to standard form by converting
+    the (tightened) simple bounds to upper bound constraints, introducing
+    non-negative slack variables for inequality constraints, and expressing
+    unbounded variables as the difference between two non-negative variables.
+    Optionally, the problem is automatically scaled via equilibration [12]_.
+    The selected algorithm solves the standard form problem, and a
+    postprocessing routine converts the result to a solution to the original
+    problem.
+
+    References
+    ----------
+    .. [1] Dantzig, George B., Linear programming and extensions. Rand
+           Corporation Research Study Princeton Univ. Press, Princeton, NJ,
+           1963
+    .. [2] Hillier, S.H. and Lieberman, G.J. (1995), "Introduction to
+           Mathematical Programming", McGraw-Hill, Chapter 4.
+    .. [3] Bland, Robert G. New finite pivoting rules for the simplex method.
+           Mathematics of Operations Research (2), 1977: pp. 103-107.
+    .. [4] Andersen, Erling D., and Knud D. Andersen. "The MOSEK interior point
+           optimizer for linear programming: an implementation of the
+           homogeneous algorithm." High performance optimization. Springer US,
+           2000. 197-232.
+    .. [5] Andersen, Erling D. "Finding all linearly dependent rows in
+           large-scale linear programming." Optimization Methods and Software
+           6.3 (1995): 219-227.
+    .. [6] Freund, Robert M. "Primal-Dual Interior-Point Methods for Linear
+           Programming based on Newton's Method." Unpublished Course Notes,
+           March 2004. Available 2/25/2017 at
+           https://ocw.mit.edu/courses/sloan-school-of-management/15-084j-nonlinear-programming-spring-2004/lecture-notes/lec14_int_pt_mthd.pdf
+    .. [7] Fourer, Robert. "Solving Linear Programs by Interior-Point Methods."
+           Unpublished Course Notes, August 26, 2005. Available 2/25/2017 at
+           http://www.4er.org/CourseNotes/Book%20B/B-III.pdf
+    .. [8] Andersen, Erling D., and Knud D. Andersen. "Presolving in linear
+           programming." Mathematical Programming 71.2 (1995): 221-245.
+    .. [9] Bertsimas, Dimitris, and J. Tsitsiklis. "Introduction to linear
+           programming." Athena Scientific 1 (1997): 997.
+    .. [10] Andersen, Erling D., et al. Implementation of interior point
+            methods for large scale linear programming. HEC/Universite de
+            Geneve, 1996.
+    .. [11] Bartels, Richard H. "A stabilization of the simplex method."
+            Journal in  Numerische Mathematik 16.5 (1971): 414-434.
+    .. [12] Tomlin, J. A. "On scaling linear programming problems."
+            Mathematical Programming Study 4 (1975): 146-166.
+    .. [13] Huangfu, Q., Galabova, I., Feldmeier, M., and Hall, J. A. J.
+            "HiGHS - high performance software for linear optimization."
+            https://highs.dev/
+    .. [14] Huangfu, Q. and Hall, J. A. J. "Parallelizing the dual revised
+            simplex method." Mathematical Programming Computation, 10 (1),
+            119-142, 2018. DOI: 10.1007/s12532-017-0130-5
+
+    Examples
+    --------
+    Consider the following problem:
+
+    .. math::
+
+        \min_{x_0, x_1} \ -x_0 + 4x_1 & \\
+        \mbox{such that} \ -3x_0 + x_1 & \leq 6,\\
+        -x_0 - 2x_1 & \geq -4,\\
+        x_1 & \geq -3.
+
+    The problem is not presented in the form accepted by `linprog`. This is
+    easily remedied by converting the "greater than" inequality
+    constraint to a "less than" inequality constraint by
+    multiplying both sides by a factor of :math:`-1`. Note also that the last
+    constraint is really the simple bound :math:`-3 \leq x_1 \leq \infty`.
+    Finally, since there are no bounds on :math:`x_0`, we must explicitly
+    specify the bounds :math:`-\infty \leq x_0 \leq \infty`, as the
+    default is for variables to be non-negative. After collecting coeffecients
+    into arrays and tuples, the input for this problem is:
+
+    >>> from scipy.optimize import linprog
+    >>> c = [-1, 4]
+    >>> A = [[-3, 1], [1, 2]]
+    >>> b = [6, 4]
+    >>> x0_bounds = (None, None)
+    >>> x1_bounds = (-3, None)
+    >>> res = linprog(c, A_ub=A, b_ub=b, bounds=[x0_bounds, x1_bounds])
+    >>> res.fun
+    -22.0
+    >>> res.x
+    array([10., -3.])
+    >>> res.message
+    'Optimization terminated successfully. (HiGHS Status 7: Optimal)'
+
+    The marginals (AKA dual values / shadow prices / Lagrange multipliers)
+    and residuals (slacks) are also available.
+
+    >>> res.ineqlin
+      residual: [ 3.900e+01  0.000e+00]
+     marginals: [-0.000e+00 -1.000e+00]
+
+    For example, because the marginal associated with the second inequality
+    constraint is -1, we expect the optimal value of the objective function
+    to decrease by ``eps`` if we add a small amount ``eps`` to the right hand
+    side of the second inequality constraint:
+
+    >>> eps = 0.05
+    >>> b[1] += eps
+    >>> linprog(c, A_ub=A, b_ub=b, bounds=[x0_bounds, x1_bounds]).fun
+    -22.05
+
+    Also, because the residual on the first inequality constraint is 39, we
+    can decrease the right hand side of the first constraint by 39 without
+    affecting the optimal solution.
+
+    >>> b = [6, 4]  # reset to original values
+    >>> b[0] -= 39
+    >>> linprog(c, A_ub=A, b_ub=b, bounds=[x0_bounds, x1_bounds]).fun
+    -22.0
+
+    """
+
+    meth = method.lower()
+    methods = {"highs", "highs-ds", "highs-ipm",
+               "simplex", "revised simplex", "interior-point"}
+
+    if meth not in methods:
+        raise ValueError(f"Unknown solver '{method}'")
+
+    if x0 is not None and meth != "revised simplex":
+        warning_message = "x0 is used only when method is 'revised simplex'. "
+        warn(warning_message, OptimizeWarning, stacklevel=2)
+
+    if np.any(integrality) and not meth == "highs":
+        integrality = None
+        warning_message = ("Only `method='highs'` supports integer "
+                           "constraints. Ignoring `integrality`.")
+        warn(warning_message, OptimizeWarning, stacklevel=2)
+    elif np.any(integrality):
+        integrality = np.broadcast_to(integrality, np.shape(c))
+
+    lp = _LPProblem(c, A_ub, b_ub, A_eq, b_eq, bounds, x0, integrality)
+    lp, solver_options = _parse_linprog(lp, options, meth)
+    tol = solver_options.get('tol', 1e-9)
+
+    # Give unmodified problem to HiGHS
+    if meth.startswith('highs'):
+        if callback is not None:
+            raise NotImplementedError("HiGHS solvers do not support the "
+                                      "callback interface.")
+        highs_solvers = {'highs-ipm': 'ipm', 'highs-ds': 'simplex',
+                         'highs': None}
+
+        sol = _linprog_highs(lp, solver=highs_solvers[meth],
+                             **solver_options)
+        sol['status'], sol['message'] = (
+            _check_result(sol['x'], sol['fun'], sol['status'], sol['slack'],
+                          sol['con'], lp.bounds, tol, sol['message'],
+                          integrality))
+        sol['success'] = sol['status'] == 0
+        return OptimizeResult(sol)
+
+    warn(f"`method='{meth}'` is deprecated and will be removed in SciPy "
+         "1.11.0. Please use one of the HiGHS solvers (e.g. "
+         "`method='highs'`) in new code.", DeprecationWarning, stacklevel=2)
+
+    iteration = 0
+    complete = False  # will become True if solved in presolve
+    undo = []
+
+    # Keep the original arrays to calculate slack/residuals for original
+    # problem.
+    lp_o = deepcopy(lp)
+
+    # Solve trivial problem, eliminate variables, tighten bounds, etc.
+    rr_method = solver_options.pop('rr_method', None)  # need to pop these;
+    rr = solver_options.pop('rr', True)  # they're not passed to methods
+    c0 = 0  # we might get a constant term in the objective
+    if solver_options.pop('presolve', True):
+        (lp, c0, x, undo, complete, status, message) = _presolve(lp, rr,
+                                                                 rr_method,
+                                                                 tol)
+
+    C, b_scale = 1, 1  # for trivial unscaling if autoscale is not used
+    postsolve_args = (lp_o._replace(bounds=lp.bounds), undo, C, b_scale)
+
+    if not complete:
+        A, b, c, c0, x0 = _get_Abc(lp, c0)
+        if solver_options.pop('autoscale', False):
+            A, b, c, x0, C, b_scale = _autoscale(A, b, c, x0)
+            postsolve_args = postsolve_args[:-2] + (C, b_scale)
+
+        if meth == 'simplex':
+            x, status, message, iteration = _linprog_simplex(
+                c, c0=c0, A=A, b=b, callback=callback,
+                postsolve_args=postsolve_args, **solver_options)
+        elif meth == 'interior-point':
+            x, status, message, iteration = _linprog_ip(
+                c, c0=c0, A=A, b=b, callback=callback,
+                postsolve_args=postsolve_args, **solver_options)
+        elif meth == 'revised simplex':
+            x, status, message, iteration = _linprog_rs(
+                c, c0=c0, A=A, b=b, x0=x0, callback=callback,
+                postsolve_args=postsolve_args, **solver_options)
+
+    # Eliminate artificial variables, re-introduce presolved variables, etc.
+    disp = solver_options.get('disp', False)
+
+    x, fun, slack, con = _postsolve(x, postsolve_args, complete)
+
+    status, message = _check_result(x, fun, status, slack, con, lp_o.bounds,
+                                    tol, message, integrality)
+
+    if disp:
+        _display_summary(message, status, fun, iteration)
+
+    sol = {
+        'x': x,
+        'fun': fun,
+        'slack': slack,
+        'con': con,
+        'status': status,
+        'message': message,
+        'nit': iteration,
+        'success': status == 0}
+
+    return OptimizeResult(sol)

env-llmeval/lib/python3.10/site-packages/scipy/optimize/_linprog_ip.py

@@ -0,0 +1,1126 @@
+"""Interior-point method for linear programming
+
+The *interior-point* method uses the primal-dual path following algorithm
+outlined in [1]_. This algorithm supports sparse constraint matrices and
+is typically faster than the simplex methods, especially for large, sparse
+problems. Note, however, that the solution returned may be slightly less
+accurate than those of the simplex methods and will not, in general,
+correspond with a vertex of the polytope defined by the constraints.
+
+    .. versionadded:: 1.0.0
+
+References
+----------
+.. [1] Andersen, Erling D., and Knud D. Andersen. "The MOSEK interior point
+       optimizer for linear programming: an implementation of the
+       homogeneous algorithm." High performance optimization. Springer US,
+       2000. 197-232.
+"""
+# Author: Matt Haberland
+
+import numpy as np
+import scipy as sp
+import scipy.sparse as sps
+from warnings import warn
+from scipy.linalg import LinAlgError
+from ._optimize import OptimizeWarning, OptimizeResult, _check_unknown_options
+from ._linprog_util import _postsolve
+has_umfpack = True
+has_cholmod = True
+try:
+    import sksparse  # noqa: F401
+    from sksparse.cholmod import cholesky as cholmod  # noqa: F401
+    from sksparse.cholmod import analyze as cholmod_analyze
+except ImportError:
+    has_cholmod = False
+try:
+    import scikits.umfpack  # test whether to use factorized  # noqa: F401
+except ImportError:
+    has_umfpack = False
+
+
+def _get_solver(M, sparse=False, lstsq=False, sym_pos=True,
+                cholesky=True, permc_spec='MMD_AT_PLUS_A'):
+    """
+    Given solver options, return a handle to the appropriate linear system
+    solver.
+
+    Parameters
+    ----------
+    M : 2-D array
+        As defined in [4] Equation 8.31
+    sparse : bool (default = False)
+        True if the system to be solved is sparse. This is typically set
+        True when the original ``A_ub`` and ``A_eq`` arrays are sparse.
+    lstsq : bool (default = False)
+        True if the system is ill-conditioned and/or (nearly) singular and
+        thus a more robust least-squares solver is desired. This is sometimes
+        needed as the solution is approached.
+    sym_pos : bool (default = True)
+        True if the system matrix is symmetric positive definite
+        Sometimes this needs to be set false as the solution is approached,
+        even when the system should be symmetric positive definite, due to
+        numerical difficulties.
+    cholesky : bool (default = True)
+        True if the system is to be solved by Cholesky, rather than LU,
+        decomposition. This is typically faster unless the problem is very
+        small or prone to numerical difficulties.
+    permc_spec : str (default = 'MMD_AT_PLUS_A')
+        Sparsity preservation strategy used by SuperLU. Acceptable values are:
+
+        - ``NATURAL``: natural ordering.
+        - ``MMD_ATA``: minimum degree ordering on the structure of A^T A.
+        - ``MMD_AT_PLUS_A``: minimum degree ordering on the structure of A^T+A.
+        - ``COLAMD``: approximate minimum degree column ordering.
+
+        See SuperLU documentation.
+
+    Returns
+    -------
+    solve : function
+        Handle to the appropriate solver function
+
+    """
+    try:
+        if sparse:
+            if lstsq:
+                def solve(r, sym_pos=False):
+                    return sps.linalg.lsqr(M, r)[0]
+            elif cholesky:
+                try:
+                    # Will raise an exception in the first call,
+                    # or when the matrix changes due to a new problem
+                    _get_solver.cholmod_factor.cholesky_inplace(M)
+                except Exception:
+                    _get_solver.cholmod_factor = cholmod_analyze(M)
+                    _get_solver.cholmod_factor.cholesky_inplace(M)
+                solve = _get_solver.cholmod_factor
+            else:
+                if has_umfpack and sym_pos:
+                    solve = sps.linalg.factorized(M)
+                else:  # factorized doesn't pass permc_spec
+                    solve = sps.linalg.splu(M, permc_spec=permc_spec).solve
+
+        else:
+            if lstsq:  # sometimes necessary as solution is approached
+                def solve(r):
+                    return sp.linalg.lstsq(M, r)[0]
+            elif cholesky:
+                L = sp.linalg.cho_factor(M)
+
+                def solve(r):
+                    return sp.linalg.cho_solve(L, r)
+            else:
+                # this seems to cache the matrix factorization, so solving
+                # with multiple right hand sides is much faster
+                def solve(r, sym_pos=sym_pos):
+                    if sym_pos:
+                        return sp.linalg.solve(M, r, assume_a="pos")
+                    else:
+                        return sp.linalg.solve(M, r)
+    # There are many things that can go wrong here, and it's hard to say
+    # what all of them are. It doesn't really matter: if the matrix can't be
+    # factorized, return None. get_solver will be called again with different
+    # inputs, and a new routine will try to factorize the matrix.
+    except KeyboardInterrupt:
+        raise
+    except Exception:
+        return None
+    return solve
+
+
+def _get_delta(A, b, c, x, y, z, tau, kappa, gamma, eta, sparse=False,
+               lstsq=False, sym_pos=True, cholesky=True, pc=True, ip=False,
+               permc_spec='MMD_AT_PLUS_A'):
+    """
+    Given standard form problem defined by ``A``, ``b``, and ``c``;
+    current variable estimates ``x``, ``y``, ``z``, ``tau``, and ``kappa``;
+    algorithmic parameters ``gamma and ``eta;
+    and options ``sparse``, ``lstsq``, ``sym_pos``, ``cholesky``, ``pc``
+    (predictor-corrector), and ``ip`` (initial point improvement),
+    get the search direction for increments to the variable estimates.
+
+    Parameters
+    ----------
+    As defined in [4], except:
+    sparse : bool
+        True if the system to be solved is sparse. This is typically set
+        True when the original ``A_ub`` and ``A_eq`` arrays are sparse.
+    lstsq : bool
+        True if the system is ill-conditioned and/or (nearly) singular and
+        thus a more robust least-squares solver is desired. This is sometimes
+        needed as the solution is approached.
+    sym_pos : bool
+        True if the system matrix is symmetric positive definite
+        Sometimes this needs to be set false as the solution is approached,
+        even when the system should be symmetric positive definite, due to
+        numerical difficulties.
+    cholesky : bool
+        True if the system is to be solved by Cholesky, rather than LU,
+        decomposition. This is typically faster unless the problem is very
+        small or prone to numerical difficulties.
+    pc : bool
+        True if the predictor-corrector method of Mehrota is to be used. This
+        is almost always (if not always) beneficial. Even though it requires
+        the solution of an additional linear system, the factorization
+        is typically (implicitly) reused so solution is efficient, and the
+        number of algorithm iterations is typically reduced.
+    ip : bool
+        True if the improved initial point suggestion due to [4] section 4.3
+        is desired. It's unclear whether this is beneficial.
+    permc_spec : str (default = 'MMD_AT_PLUS_A')
+        (Has effect only with ``sparse = True``, ``lstsq = False``, ``sym_pos =
+        True``.) A matrix is factorized in each iteration of the algorithm.
+        This option specifies how to permute the columns of the matrix for
+        sparsity preservation. Acceptable values are:
+
+        - ``NATURAL``: natural ordering.
+        - ``MMD_ATA``: minimum degree ordering on the structure of A^T A.
+        - ``MMD_AT_PLUS_A``: minimum degree ordering on the structure of A^T+A.
+        - ``COLAMD``: approximate minimum degree column ordering.
+
+        This option can impact the convergence of the
+        interior point algorithm; test different values to determine which
+        performs best for your problem. For more information, refer to
+        ``scipy.sparse.linalg.splu``.
+
+    Returns
+    -------
+    Search directions as defined in [4]
+
+    References
+    ----------
+    .. [4] Andersen, Erling D., and Knud D. Andersen. "The MOSEK interior point
+           optimizer for linear programming: an implementation of the
+           homogeneous algorithm." High performance optimization. Springer US,
+           2000. 197-232.
+
+    """
+    if A.shape[0] == 0:
+        # If there are no constraints, some solvers fail (understandably)
+        # rather than returning empty solution. This gets the job done.
+        sparse, lstsq, sym_pos, cholesky = False, False, True, False
+    n_x = len(x)
+
+    # [4] Equation 8.8
+    r_P = b * tau - A.dot(x)
+    r_D = c * tau - A.T.dot(y) - z
+    r_G = c.dot(x) - b.transpose().dot(y) + kappa
+    mu = (x.dot(z) + tau * kappa) / (n_x + 1)
+
+    #  Assemble M from [4] Equation 8.31
+    Dinv = x / z
+
+    if sparse:
+        M = A.dot(sps.diags(Dinv, 0, format="csc").dot(A.T))
+    else:
+        M = A.dot(Dinv.reshape(-1, 1) * A.T)
+    solve = _get_solver(M, sparse, lstsq, sym_pos, cholesky, permc_spec)
+
+    # pc: "predictor-corrector" [4] Section 4.1
+    # In development this option could be turned off
+    # but it always seems to improve performance substantially
+    n_corrections = 1 if pc else 0
+
+    i = 0
+    alpha, d_x, d_z, d_tau, d_kappa = 0, 0, 0, 0, 0
+    while i <= n_corrections:
+        # Reference [4] Eq. 8.6
+        rhatp = eta(gamma) * r_P
+        rhatd = eta(gamma) * r_D
+        rhatg = eta(gamma) * r_G
+
+        # Reference [4] Eq. 8.7
+        rhatxs = gamma * mu - x * z
+        rhattk = gamma * mu - tau * kappa
+
+        if i == 1:
+            if ip:  # if the correction is to get "initial point"
+                # Reference [4] Eq. 8.23
+                rhatxs = ((1 - alpha) * gamma * mu -
+                          x * z - alpha**2 * d_x * d_z)
+                rhattk = ((1 - alpha) * gamma * mu -
+                    tau * kappa -
+                    alpha**2 * d_tau * d_kappa)
+            else:  # if the correction is for "predictor-corrector"
+                # Reference [4] Eq. 8.13
+                rhatxs -= d_x * d_z
+                rhattk -= d_tau * d_kappa
+
+        # sometimes numerical difficulties arise as the solution is approached
+        # this loop tries to solve the equations using a sequence of functions
+        # for solve. For dense systems, the order is:
+        # 1. scipy.linalg.cho_factor/scipy.linalg.cho_solve,
+        # 2. scipy.linalg.solve w/ sym_pos = True,
+        # 3. scipy.linalg.solve w/ sym_pos = False, and if all else fails
+        # 4. scipy.linalg.lstsq
+        # For sparse systems, the order is:
+        # 1. sksparse.cholmod.cholesky (if available)
+        # 2. scipy.sparse.linalg.factorized (if umfpack available)
+        # 3. scipy.sparse.linalg.splu
+        # 4. scipy.sparse.linalg.lsqr
+        solved = False
+        while not solved:
+            try:
+                # [4] Equation 8.28
+                p, q = _sym_solve(Dinv, A, c, b, solve)
+                # [4] Equation 8.29
+                u, v = _sym_solve(Dinv, A, rhatd -
+                                  (1 / x) * rhatxs, rhatp, solve)
+                if np.any(np.isnan(p)) or np.any(np.isnan(q)):
+                    raise LinAlgError
+                solved = True
+            except (LinAlgError, ValueError, TypeError) as e:
+                # Usually this doesn't happen. If it does, it happens when
+                # there are redundant constraints or when approaching the
+                # solution. If so, change solver.
+                if cholesky:
+                    cholesky = False
+                    warn(
+                        "Solving system with option 'cholesky':True "
+                        "failed. It is normal for this to happen "
+                        "occasionally, especially as the solution is "
+                        "approached. However, if you see this frequently, "
+                        "consider setting option 'cholesky' to False.",
+                        OptimizeWarning, stacklevel=5)
+                elif sym_pos:
+                    sym_pos = False
+                    warn(
+                        "Solving system with option 'sym_pos':True "
+                        "failed. It is normal for this to happen "
+                        "occasionally, especially as the solution is "
+                        "approached. However, if you see this frequently, "
+                        "consider setting option 'sym_pos' to False.",
+                        OptimizeWarning, stacklevel=5)
+                elif not lstsq:
+                    lstsq = True
+                    warn(
+                        "Solving system with option 'sym_pos':False "
+                        "failed. This may happen occasionally, "
+                        "especially as the solution is "
+                        "approached. However, if you see this frequently, "
+                        "your problem may be numerically challenging. "
+                        "If you cannot improve the formulation, consider "
+                        "setting 'lstsq' to True. Consider also setting "
+                        "`presolve` to True, if it is not already.",
+                        OptimizeWarning, stacklevel=5)
+                else:
+                    raise e
+                solve = _get_solver(M, sparse, lstsq, sym_pos,
+                                    cholesky, permc_spec)
+        # [4] Results after 8.29
+        d_tau = ((rhatg + 1 / tau * rhattk - (-c.dot(u) + b.dot(v))) /
+                 (1 / tau * kappa + (-c.dot(p) + b.dot(q))))
+        d_x = u + p * d_tau
+        d_y = v + q * d_tau
+
+        # [4] Relations between  after 8.25 and 8.26
+        d_z = (1 / x) * (rhatxs - z * d_x)
+        d_kappa = 1 / tau * (rhattk - kappa * d_tau)
+
+        # [4] 8.12 and "Let alpha be the maximal possible step..." before 8.23
+        alpha = _get_step(x, d_x, z, d_z, tau, d_tau, kappa, d_kappa, 1)
+        if ip:  # initial point - see [4] 4.4
+            gamma = 10
+        else:  # predictor-corrector, [4] definition after 8.12
+            beta1 = 0.1  # [4] pg. 220 (Table 8.1)
+            gamma = (1 - alpha)**2 * min(beta1, (1 - alpha))
+        i += 1
+
+    return d_x, d_y, d_z, d_tau, d_kappa
+
+
+def _sym_solve(Dinv, A, r1, r2, solve):
+    """
+    An implementation of [4] equation 8.31 and 8.32
+
+    References
+    ----------
+    .. [4] Andersen, Erling D., and Knud D. Andersen. "The MOSEK interior point
+           optimizer for linear programming: an implementation of the
+           homogeneous algorithm." High performance optimization. Springer US,
+           2000. 197-232.
+
+    """
+    # [4] 8.31
+    r = r2 + A.dot(Dinv * r1)
+    v = solve(r)
+    # [4] 8.32
+    u = Dinv * (A.T.dot(v) - r1)
+    return u, v
+
+
+def _get_step(x, d_x, z, d_z, tau, d_tau, kappa, d_kappa, alpha0):
+    """
+    An implementation of [4] equation 8.21
+
+    References
+    ----------
+    .. [4] Andersen, Erling D., and Knud D. Andersen. "The MOSEK interior point
+           optimizer for linear programming: an implementation of the
+           homogeneous algorithm." High performance optimization. Springer US,
+           2000. 197-232.
+
+    """
+    # [4] 4.3 Equation 8.21, ignoring 8.20 requirement
+    # same step is taken in primal and dual spaces
+    # alpha0 is basically beta3 from [4] Table 8.1, but instead of beta3
+    # the value 1 is used in Mehrota corrector and initial point correction
+    i_x = d_x < 0
+    i_z = d_z < 0
+    alpha_x = alpha0 * np.min(x[i_x] / -d_x[i_x]) if np.any(i_x) else 1
+    alpha_tau = alpha0 * tau / -d_tau if d_tau < 0 else 1
+    alpha_z = alpha0 * np.min(z[i_z] / -d_z[i_z]) if np.any(i_z) else 1
+    alpha_kappa = alpha0 * kappa / -d_kappa if d_kappa < 0 else 1
+    alpha = np.min([1, alpha_x, alpha_tau, alpha_z, alpha_kappa])
+    return alpha
+
+
+def _get_message(status):
+    """
+    Given problem status code, return a more detailed message.
+
+    Parameters
+    ----------
+    status : int
+        An integer representing the exit status of the optimization::
+
+         0 : Optimization terminated successfully
+         1 : Iteration limit reached
+         2 : Problem appears to be infeasible
+         3 : Problem appears to be unbounded
+         4 : Serious numerical difficulties encountered
+
+    Returns
+    -------
+    message : str
+        A string descriptor of the exit status of the optimization.
+
+    """
+    messages = (
+        ["Optimization terminated successfully.",
+         "The iteration limit was reached before the algorithm converged.",
+         "The algorithm terminated successfully and determined that the "
+         "problem is infeasible.",
+         "The algorithm terminated successfully and determined that the "
+         "problem is unbounded.",
+         "Numerical difficulties were encountered before the problem "
+         "converged. Please check your problem formulation for errors, "
+         "independence of linear equality constraints, and reasonable "
+         "scaling and matrix condition numbers. If you continue to "
+         "encounter this error, please submit a bug report."
+         ])
+    return messages[status]
+
+
+def _do_step(x, y, z, tau, kappa, d_x, d_y, d_z, d_tau, d_kappa, alpha):
+    """
+    An implementation of [4] Equation 8.9
+
+    References
+    ----------
+    .. [4] Andersen, Erling D., and Knud D. Andersen. "The MOSEK interior point
+           optimizer for linear programming: an implementation of the
+           homogeneous algorithm." High performance optimization. Springer US,
+           2000. 197-232.
+
+    """
+    x = x + alpha * d_x
+    tau = tau + alpha * d_tau
+    z = z + alpha * d_z
+    kappa = kappa + alpha * d_kappa
+    y = y + alpha * d_y
+    return x, y, z, tau, kappa
+
+
+def _get_blind_start(shape):
+    """
+    Return the starting point from [4] 4.4
+
+    References
+    ----------
+    .. [4] Andersen, Erling D., and Knud D. Andersen. "The MOSEK interior point
+           optimizer for linear programming: an implementation of the
+           homogeneous algorithm." High performance optimization. Springer US,
+           2000. 197-232.
+
+    """
+    m, n = shape
+    x0 = np.ones(n)
+    y0 = np.zeros(m)
+    z0 = np.ones(n)
+    tau0 = 1
+    kappa0 = 1
+    return x0, y0, z0, tau0, kappa0
+
+
+def _indicators(A, b, c, c0, x, y, z, tau, kappa):
+    """
+    Implementation of several equations from [4] used as indicators of
+    the status of optimization.
+
+    References
+    ----------
+    .. [4] Andersen, Erling D., and Knud D. Andersen. "The MOSEK interior point
+           optimizer for linear programming: an implementation of the
+           homogeneous algorithm." High performance optimization. Springer US,
+           2000. 197-232.
+
+    """
+
+    # residuals for termination are relative to initial values
+    x0, y0, z0, tau0, kappa0 = _get_blind_start(A.shape)
+
+    # See [4], Section 4 - The Homogeneous Algorithm, Equation 8.8
+    def r_p(x, tau):
+        return b * tau - A.dot(x)
+
+    def r_d(y, z, tau):
+        return c * tau - A.T.dot(y) - z
+
+    def r_g(x, y, kappa):
+        return kappa + c.dot(x) - b.dot(y)
+
+    # np.dot unpacks if they are arrays of size one
+    def mu(x, tau, z, kappa):
+        return (x.dot(z) + np.dot(tau, kappa)) / (len(x) + 1)
+
+    obj = c.dot(x / tau) + c0
+
+    def norm(a):
+        return np.linalg.norm(a)
+
+    # See [4], Section 4.5 - The Stopping Criteria
+    r_p0 = r_p(x0, tau0)
+    r_d0 = r_d(y0, z0, tau0)
+    r_g0 = r_g(x0, y0, kappa0)
+    mu_0 = mu(x0, tau0, z0, kappa0)
+    rho_A = norm(c.T.dot(x) - b.T.dot(y)) / (tau + norm(b.T.dot(y)))
+    rho_p = norm(r_p(x, tau)) / max(1, norm(r_p0))
+    rho_d = norm(r_d(y, z, tau)) / max(1, norm(r_d0))
+    rho_g = norm(r_g(x, y, kappa)) / max(1, norm(r_g0))
+    rho_mu = mu(x, tau, z, kappa) / mu_0
+    return rho_p, rho_d, rho_A, rho_g, rho_mu, obj
+
+
+def _display_iter(rho_p, rho_d, rho_g, alpha, rho_mu, obj, header=False):
+    """
+    Print indicators of optimization status to the console.
+
+    Parameters
+    ----------
+    rho_p : float
+        The (normalized) primal feasibility, see [4] 4.5
+    rho_d : float
+        The (normalized) dual feasibility, see [4] 4.5
+    rho_g : float
+        The (normalized) duality gap, see [4] 4.5
+    alpha : float
+        The step size, see [4] 4.3
+    rho_mu : float
+        The (normalized) path parameter, see [4] 4.5
+    obj : float
+        The objective function value of the current iterate
+    header : bool
+        True if a header is to be printed
+
+    References
+    ----------
+    .. [4] Andersen, Erling D., and Knud D. Andersen. "The MOSEK interior point
+           optimizer for linear programming: an implementation of the
+           homogeneous algorithm." High performance optimization. Springer US,
+           2000. 197-232.
+
+    """
+    if header:
+        print("Primal Feasibility ",
+              "Dual Feasibility   ",
+              "Duality Gap        ",
+              "Step            ",
+              "Path Parameter     ",
+              "Objective          ")
+
+    # no clue why this works
+    fmt = '{0:<20.13}{1:<20.13}{2:<20.13}{3:<17.13}{4:<20.13}{5:<20.13}'
+    print(fmt.format(
+        float(rho_p),
+        float(rho_d),
+        float(rho_g),
+        alpha if isinstance(alpha, str) else float(alpha),
+        float(rho_mu),
+        float(obj)))
+
+
+def _ip_hsd(A, b, c, c0, alpha0, beta, maxiter, disp, tol, sparse, lstsq,
+            sym_pos, cholesky, pc, ip, permc_spec, callback, postsolve_args):
+    r"""
+    Solve a linear programming problem in standard form:
+
+    Minimize::
+
+        c @ x
+
+    Subject to::
+
+        A @ x == b
+            x >= 0
+
+    using the interior point method of [4].
+
+    Parameters
+    ----------
+    A : 2-D array
+        2-D array such that ``A @ x``, gives the values of the equality
+        constraints at ``x``.
+    b : 1-D array
+        1-D array of values representing the RHS of each equality constraint
+        (row) in ``A`` (for standard form problem).
+    c : 1-D array
+        Coefficients of the linear objective function to be minimized (for
+        standard form problem).
+    c0 : float
+        Constant term in objective function due to fixed (and eliminated)
+        variables. (Purely for display.)
+    alpha0 : float
+        The maximal step size for Mehrota's predictor-corrector search
+        direction; see :math:`\beta_3`of [4] Table 8.1
+    beta : float
+        The desired reduction of the path parameter :math:`\mu` (see  [6]_)
+    maxiter : int
+        The maximum number of iterations of the algorithm.
+    disp : bool
+        Set to ``True`` if indicators of optimization status are to be printed
+        to the console each iteration.
+    tol : float
+        Termination tolerance; see [4]_ Section 4.5.
+    sparse : bool
+        Set to ``True`` if the problem is to be treated as sparse. However,
+        the inputs ``A_eq`` and ``A_ub`` should nonetheless be provided as
+        (dense) arrays rather than sparse matrices.
+    lstsq : bool
+        Set to ``True`` if the problem is expected to be very poorly
+        conditioned. This should always be left as ``False`` unless severe
+        numerical difficulties are frequently encountered, and a better option
+        would be to improve the formulation of the problem.
+    sym_pos : bool
+        Leave ``True`` if the problem is expected to yield a well conditioned
+        symmetric positive definite normal equation matrix (almost always).
+    cholesky : bool
+        Set to ``True`` if the normal equations are to be solved by explicit
+        Cholesky decomposition followed by explicit forward/backward
+        substitution. This is typically faster for moderate, dense problems
+        that are numerically well-behaved.
+    pc : bool
+        Leave ``True`` if the predictor-corrector method of Mehrota is to be
+        used. This is almost always (if not always) beneficial.
+    ip : bool
+        Set to ``True`` if the improved initial point suggestion due to [4]_
+        Section 4.3 is desired. It's unclear whether this is beneficial.
+    permc_spec : str (default = 'MMD_AT_PLUS_A')
+        (Has effect only with ``sparse = True``, ``lstsq = False``, ``sym_pos =
+        True``.) A matrix is factorized in each iteration of the algorithm.
+        This option specifies how to permute the columns of the matrix for
+        sparsity preservation. Acceptable values are:
+
+        - ``NATURAL``: natural ordering.
+        - ``MMD_ATA``: minimum degree ordering on the structure of A^T A.
+        - ``MMD_AT_PLUS_A``: minimum degree ordering on the structure of A^T+A.
+        - ``COLAMD``: approximate minimum degree column ordering.
+
+        This option can impact the convergence of the
+        interior point algorithm; test different values to determine which
+        performs best for your problem. For more information, refer to
+        ``scipy.sparse.linalg.splu``.
+    callback : callable, optional
+        If a callback function is provided, it will be called within each
+        iteration of the algorithm. The callback function must accept a single
+        `scipy.optimize.OptimizeResult` consisting of the following fields:
+
+            x : 1-D array
+                Current solution vector
+            fun : float
+                Current value of the objective function
+            success : bool
+                True only when an algorithm has completed successfully,
+                so this is always False as the callback function is called
+                only while the algorithm is still iterating.
+            slack : 1-D array
+                The values of the slack variables. Each slack variable
+                corresponds to an inequality constraint. If the slack is zero,
+                the corresponding constraint is active.
+            con : 1-D array
+                The (nominally zero) residuals of the equality constraints,
+                that is, ``b - A_eq @ x``
+            phase : int
+                The phase of the algorithm being executed. This is always
+                1 for the interior-point method because it has only one phase.
+            status : int
+                For revised simplex, this is always 0 because if a different
+                status is detected, the algorithm terminates.
+            nit : int
+                The number of iterations performed.
+            message : str
+                A string descriptor of the exit status of the optimization.
+    postsolve_args : tuple
+        Data needed by _postsolve to convert the solution to the standard-form
+        problem into the solution to the original problem.
+
+    Returns
+    -------
+    x_hat : float
+        Solution vector (for standard form problem).
+    status : int
+        An integer representing the exit status of the optimization::
+
+         0 : Optimization terminated successfully
+         1 : Iteration limit reached
+         2 : Problem appears to be infeasible
+         3 : Problem appears to be unbounded
+         4 : Serious numerical difficulties encountered
+
+    message : str
+        A string descriptor of the exit status of the optimization.
+    iteration : int
+        The number of iterations taken to solve the problem
+
+    References
+    ----------
+    .. [4] Andersen, Erling D., and Knud D. Andersen. "The MOSEK interior point
+           optimizer for linear programming: an implementation of the
+           homogeneous algorithm." High performance optimization. Springer US,
+           2000. 197-232.
+    .. [6] Freund, Robert M. "Primal-Dual Interior-Point Methods for Linear
+           Programming based on Newton's Method." Unpublished Course Notes,
+           March 2004. Available 2/25/2017 at:
+           https://ocw.mit.edu/courses/sloan-school-of-management/15-084j-nonlinear-programming-spring-2004/lecture-notes/lec14_int_pt_mthd.pdf
+
+    """
+
+    iteration = 0
+
+    # default initial point
+    x, y, z, tau, kappa = _get_blind_start(A.shape)
+
+    # first iteration is special improvement of initial point
+    ip = ip if pc else False
+
+    # [4] 4.5
+    rho_p, rho_d, rho_A, rho_g, rho_mu, obj = _indicators(
+        A, b, c, c0, x, y, z, tau, kappa)
+    go = rho_p > tol or rho_d > tol or rho_A > tol  # we might get lucky : )
+
+    if disp:
+        _display_iter(rho_p, rho_d, rho_g, "-", rho_mu, obj, header=True)
+    if callback is not None:
+        x_o, fun, slack, con = _postsolve(x/tau, postsolve_args)
+        res = OptimizeResult({'x': x_o, 'fun': fun, 'slack': slack,
+                              'con': con, 'nit': iteration, 'phase': 1,
+                              'complete': False, 'status': 0,
+                              'message': "", 'success': False})
+        callback(res)
+
+    status = 0
+    message = "Optimization terminated successfully."
+
+    if sparse:
+        A = sps.csc_matrix(A)
+
+    while go:
+
+        iteration += 1
+
+        if ip:  # initial point
+            # [4] Section 4.4
+            gamma = 1
+
+            def eta(g):
+                return 1
+        else:
+            # gamma = 0 in predictor step according to [4] 4.1
+            # if predictor/corrector is off, use mean of complementarity [6]
+            # 5.1 / [4] Below Figure 10-4
+            gamma = 0 if pc else beta * np.mean(z * x)
+            # [4] Section 4.1
+
+            def eta(g=gamma):
+                return 1 - g
+
+        try:
+            # Solve [4] 8.6 and 8.7/8.13/8.23
+            d_x, d_y, d_z, d_tau, d_kappa = _get_delta(
+                A, b, c, x, y, z, tau, kappa, gamma, eta,
+                sparse, lstsq, sym_pos, cholesky, pc, ip, permc_spec)
+
+            if ip:  # initial point
+                # [4] 4.4
+                # Formula after 8.23 takes a full step regardless if this will
+                # take it negative
+                alpha = 1.0
+                x, y, z, tau, kappa = _do_step(
+                    x, y, z, tau, kappa, d_x, d_y,
+                    d_z, d_tau, d_kappa, alpha)
+                x[x < 1] = 1
+                z[z < 1] = 1
+                tau = max(1, tau)
+                kappa = max(1, kappa)
+                ip = False  # done with initial point
+            else:
+                # [4] Section 4.3
+                alpha = _get_step(x, d_x, z, d_z, tau,
+                                  d_tau, kappa, d_kappa, alpha0)
+                # [4] Equation 8.9
+                x, y, z, tau, kappa = _do_step(
+                    x, y, z, tau, kappa, d_x, d_y, d_z, d_tau, d_kappa, alpha)
+
+        except (LinAlgError, FloatingPointError,
+                ValueError, ZeroDivisionError):
+            # this can happen when sparse solver is used and presolve
+            # is turned off. Also observed ValueError in AppVeyor Python 3.6
+            # Win32 build (PR #8676). I've never seen it otherwise.
+            status = 4
+            message = _get_message(status)
+            break
+
+        # [4] 4.5
+        rho_p, rho_d, rho_A, rho_g, rho_mu, obj = _indicators(
+            A, b, c, c0, x, y, z, tau, kappa)
+        go = rho_p > tol or rho_d > tol or rho_A > tol
+
+        if disp:
+            _display_iter(rho_p, rho_d, rho_g, alpha, rho_mu, obj)
+        if callback is not None:
+            x_o, fun, slack, con = _postsolve(x/tau, postsolve_args)
+            res = OptimizeResult({'x': x_o, 'fun': fun, 'slack': slack,
+                                  'con': con, 'nit': iteration, 'phase': 1,
+                                  'complete': False, 'status': 0,
+                                  'message': "", 'success': False})
+            callback(res)
+
+        # [4] 4.5
+        inf1 = (rho_p < tol and rho_d < tol and rho_g < tol and tau < tol *
+                max(1, kappa))
+        inf2 = rho_mu < tol and tau < tol * min(1, kappa)
+        if inf1 or inf2:
+            # [4] Lemma 8.4 / Theorem 8.3
+            if b.transpose().dot(y) > tol:
+                status = 2
+            else:  # elif c.T.dot(x) < tol: ? Probably not necessary.
+                status = 3
+            message = _get_message(status)
+            break
+        elif iteration >= maxiter:
+            status = 1
+            message = _get_message(status)
+            break
+
+    x_hat = x / tau
+    # [4] Statement after Theorem 8.2
+    return x_hat, status, message, iteration
+
+
+def _linprog_ip(c, c0, A, b, callback, postsolve_args, maxiter=1000, tol=1e-8,
+                disp=False, alpha0=.99995, beta=0.1, sparse=False, lstsq=False,
+                sym_pos=True, cholesky=None, pc=True, ip=False,
+                permc_spec='MMD_AT_PLUS_A', **unknown_options):
+    r"""
+    Minimize a linear objective function subject to linear
+    equality and non-negativity constraints using the interior point method
+    of [4]_. Linear programming is intended to solve problems
+    of the following form:
+
+    Minimize::
+
+        c @ x
+
+    Subject to::
+
+        A @ x == b
+            x >= 0
+
+    User-facing documentation is in _linprog_doc.py.
+
+    Parameters
+    ----------
+    c : 1-D array
+        Coefficients of the linear objective function to be minimized.
+    c0 : float
+        Constant term in objective function due to fixed (and eliminated)
+        variables. (Purely for display.)
+    A : 2-D array
+        2-D array such that ``A @ x``, gives the values of the equality
+        constraints at ``x``.
+    b : 1-D array
+        1-D array of values representing the right hand side of each equality
+        constraint (row) in ``A``.
+    callback : callable, optional
+        Callback function to be executed once per iteration.
+    postsolve_args : tuple
+        Data needed by _postsolve to convert the solution to the standard-form
+        problem into the solution to the original problem.
+
+    Options
+    -------
+    maxiter : int (default = 1000)
+        The maximum number of iterations of the algorithm.
+    tol : float (default = 1e-8)
+        Termination tolerance to be used for all termination criteria;
+        see [4]_ Section 4.5.
+    disp : bool (default = False)
+        Set to ``True`` if indicators of optimization status are to be printed
+        to the console each iteration.
+    alpha0 : float (default = 0.99995)
+        The maximal step size for Mehrota's predictor-corrector search
+        direction; see :math:`\beta_{3}` of [4]_ Table 8.1.
+    beta : float (default = 0.1)
+        The desired reduction of the path parameter :math:`\mu` (see [6]_)
+        when Mehrota's predictor-corrector is not in use (uncommon).
+    sparse : bool (default = False)
+        Set to ``True`` if the problem is to be treated as sparse after
+        presolve. If either ``A_eq`` or ``A_ub`` is a sparse matrix,
+        this option will automatically be set ``True``, and the problem
+        will be treated as sparse even during presolve. If your constraint
+        matrices contain mostly zeros and the problem is not very small (less
+        than about 100 constraints or variables), consider setting ``True``
+        or providing ``A_eq`` and ``A_ub`` as sparse matrices.
+    lstsq : bool (default = False)
+        Set to ``True`` if the problem is expected to be very poorly
+        conditioned. This should always be left ``False`` unless severe
+        numerical difficulties are encountered. Leave this at the default
+        unless you receive a warning message suggesting otherwise.
+    sym_pos : bool (default = True)
+        Leave ``True`` if the problem is expected to yield a well conditioned
+        symmetric positive definite normal equation matrix
+        (almost always). Leave this at the default unless you receive
+        a warning message suggesting otherwise.
+    cholesky : bool (default = True)
+        Set to ``True`` if the normal equations are to be solved by explicit
+        Cholesky decomposition followed by explicit forward/backward
+        substitution. This is typically faster for problems
+        that are numerically well-behaved.
+    pc : bool (default = True)
+        Leave ``True`` if the predictor-corrector method of Mehrota is to be
+        used. This is almost always (if not always) beneficial.
+    ip : bool (default = False)
+        Set to ``True`` if the improved initial point suggestion due to [4]_
+        Section 4.3 is desired. Whether this is beneficial or not
+        depends on the problem.
+    permc_spec : str (default = 'MMD_AT_PLUS_A')
+        (Has effect only with ``sparse = True``, ``lstsq = False``, ``sym_pos =
+        True``, and no SuiteSparse.)
+        A matrix is factorized in each iteration of the algorithm.
+        This option specifies how to permute the columns of the matrix for
+        sparsity preservation. Acceptable values are:
+
+        - ``NATURAL``: natural ordering.
+        - ``MMD_ATA``: minimum degree ordering on the structure of A^T A.
+        - ``MMD_AT_PLUS_A``: minimum degree ordering on the structure of A^T+A.
+        - ``COLAMD``: approximate minimum degree column ordering.
+
+        This option can impact the convergence of the
+        interior point algorithm; test different values to determine which
+        performs best for your problem. For more information, refer to
+        ``scipy.sparse.linalg.splu``.
+    unknown_options : dict
+        Optional arguments not used by this particular solver. If
+        `unknown_options` is non-empty a warning is issued listing all
+        unused options.
+
+    Returns
+    -------
+    x : 1-D array
+        Solution vector.
+    status : int
+        An integer representing the exit status of the optimization::
+
+         0 : Optimization terminated successfully
+         1 : Iteration limit reached
+         2 : Problem appears to be infeasible
+         3 : Problem appears to be unbounded
+         4 : Serious numerical difficulties encountered
+
+    message : str
+        A string descriptor of the exit status of the optimization.
+    iteration : int
+        The number of iterations taken to solve the problem.
+
+    Notes
+    -----
+    This method implements the algorithm outlined in [4]_ with ideas from [8]_
+    and a structure inspired by the simpler methods of [6]_.
+
+    The primal-dual path following method begins with initial 'guesses' of
+    the primal and dual variables of the standard form problem and iteratively
+    attempts to solve the (nonlinear) Karush-Kuhn-Tucker conditions for the
+    problem with a gradually reduced logarithmic barrier term added to the
+    objective. This particular implementation uses a homogeneous self-dual
+    formulation, which provides certificates of infeasibility or unboundedness
+    where applicable.
+
+    The default initial point for the primal and dual variables is that
+    defined in [4]_ Section 4.4 Equation 8.22. Optionally (by setting initial
+    point option ``ip=True``), an alternate (potentially improved) starting
+    point can be calculated according to the additional recommendations of
+    [4]_ Section 4.4.
+
+    A search direction is calculated using the predictor-corrector method
+    (single correction) proposed by Mehrota and detailed in [4]_ Section 4.1.
+    (A potential improvement would be to implement the method of multiple
+    corrections described in [4]_ Section 4.2.) In practice, this is
+    accomplished by solving the normal equations, [4]_ Section 5.1 Equations
+    8.31 and 8.32, derived from the Newton equations [4]_ Section 5 Equations
+    8.25 (compare to [4]_ Section 4 Equations 8.6-8.8). The advantage of
+    solving the normal equations rather than 8.25 directly is that the
+    matrices involved are symmetric positive definite, so Cholesky
+    decomposition can be used rather than the more expensive LU factorization.
+
+    With default options, the solver used to perform the factorization depends
+    on third-party software availability and the conditioning of the problem.
+
+    For dense problems, solvers are tried in the following order:
+
+    1. ``scipy.linalg.cho_factor``
+
+    2. ``scipy.linalg.solve`` with option ``sym_pos=True``
+
+    3. ``scipy.linalg.solve`` with option ``sym_pos=False``
+
+    4. ``scipy.linalg.lstsq``
+
+    For sparse problems:
+
+    1. ``sksparse.cholmod.cholesky`` (if scikit-sparse and SuiteSparse are installed)
+
+    2. ``scipy.sparse.linalg.factorized``
+        (if scikit-umfpack and SuiteSparse are installed)
+
+    3. ``scipy.sparse.linalg.splu`` (which uses SuperLU distributed with SciPy)
+
+    4. ``scipy.sparse.linalg.lsqr``
+
+    If the solver fails for any reason, successively more robust (but slower)
+    solvers are attempted in the order indicated. Attempting, failing, and
+    re-starting factorization can be time consuming, so if the problem is
+    numerically challenging, options can be set to  bypass solvers that are
+    failing. Setting ``cholesky=False`` skips to solver 2,
+    ``sym_pos=False`` skips to solver 3, and ``lstsq=True`` skips
+    to solver 4 for both sparse and dense problems.
+
+    Potential improvements for combatting issues associated with dense
+    columns in otherwise sparse problems are outlined in [4]_ Section 5.3 and
+    [10]_ Section 4.1-4.2; the latter also discusses the alleviation of
+    accuracy issues associated with the substitution approach to free
+    variables.
+
+    After calculating the search direction, the maximum possible step size
+    that does not activate the non-negativity constraints is calculated, and
+    the smaller of this step size and unity is applied (as in [4]_ Section
+    4.1.) [4]_ Section 4.3 suggests improvements for choosing the step size.
+
+    The new point is tested according to the termination conditions of [4]_
+    Section 4.5. The same tolerance, which can be set using the ``tol`` option,
+    is used for all checks. (A potential improvement would be to expose
+    the different tolerances to be set independently.) If optimality,
+    unboundedness, or infeasibility is detected, the solve procedure
+    terminates; otherwise it repeats.
+
+    The expected problem formulation differs between the top level ``linprog``
+    module and the method specific solvers. The method specific solvers expect a
+    problem in standard form:
+
+    Minimize::
+
+        c @ x
+
+    Subject to::
+
+        A @ x == b
+            x >= 0
+
+    Whereas the top level ``linprog`` module expects a problem of form:
+
+    Minimize::
+
+        c @ x
+
+    Subject to::
+
+        A_ub @ x <= b_ub
+        A_eq @ x == b_eq
+         lb <= x <= ub
+
+    where ``lb = 0`` and ``ub = None`` unless set in ``bounds``.
+
+    The original problem contains equality, upper-bound and variable constraints
+    whereas the method specific solver requires equality constraints and
+    variable non-negativity.
+
+    ``linprog`` module converts the original problem to standard form by
+    converting the simple bounds to upper bound constraints, introducing
+    non-negative slack variables for inequality constraints, and expressing
+    unbounded variables as the difference between two non-negative variables.
+
+
+    References
+    ----------
+    .. [4] Andersen, Erling D., and Knud D. Andersen. "The MOSEK interior point
+           optimizer for linear programming: an implementation of the
+           homogeneous algorithm." High performance optimization. Springer US,
+           2000. 197-232.
+    .. [6] Freund, Robert M. "Primal-Dual Interior-Point Methods for Linear
+           Programming based on Newton's Method." Unpublished Course Notes,
+           March 2004. Available 2/25/2017 at
+           https://ocw.mit.edu/courses/sloan-school-of-management/15-084j-nonlinear-programming-spring-2004/lecture-notes/lec14_int_pt_mthd.pdf
+    .. [8] Andersen, Erling D., and Knud D. Andersen. "Presolving in linear
+           programming." Mathematical Programming 71.2 (1995): 221-245.
+    .. [9] Bertsimas, Dimitris, and J. Tsitsiklis. "Introduction to linear
+           programming." Athena Scientific 1 (1997): 997.
+    .. [10] Andersen, Erling D., et al. Implementation of interior point methods
+            for large scale linear programming. HEC/Universite de Geneve, 1996.
+
+    """
+
+    _check_unknown_options(unknown_options)
+
+    # These should be warnings, not errors
+    if (cholesky or cholesky is None) and sparse and not has_cholmod:
+        if cholesky:
+            warn("Sparse cholesky is only available with scikit-sparse. "
+                 "Setting `cholesky = False`",
+                 OptimizeWarning, stacklevel=3)
+        cholesky = False
+
+    if sparse and lstsq:
+        warn("Option combination 'sparse':True and 'lstsq':True "
+             "is not recommended.",
+             OptimizeWarning, stacklevel=3)
+
+    if lstsq and cholesky:
+        warn("Invalid option combination 'lstsq':True "
+             "and 'cholesky':True; option 'cholesky' has no effect when "
+             "'lstsq' is set True.",
+             OptimizeWarning, stacklevel=3)
+
+    valid_permc_spec = ('NATURAL', 'MMD_ATA', 'MMD_AT_PLUS_A', 'COLAMD')
+    if permc_spec.upper() not in valid_permc_spec:
+        warn("Invalid permc_spec option: '" + str(permc_spec) + "'. "
+             "Acceptable values are 'NATURAL', 'MMD_ATA', 'MMD_AT_PLUS_A', "
+             "and 'COLAMD'. Reverting to default.",
+             OptimizeWarning, stacklevel=3)
+        permc_spec = 'MMD_AT_PLUS_A'
+
+    # This can be an error
+    if not sym_pos and cholesky:
+        raise ValueError(
+            "Invalid option combination 'sym_pos':False "
+            "and 'cholesky':True: Cholesky decomposition is only possible "
+            "for symmetric positive definite matrices.")
+
+    cholesky = cholesky or (cholesky is None and sym_pos and not lstsq)
+
+    x, status, message, iteration = _ip_hsd(A, b, c, c0, alpha0, beta,
+                                            maxiter, disp, tol, sparse,
+                                            lstsq, sym_pos, cholesky,
+                                            pc, ip, permc_spec, callback,
+                                            postsolve_args)
+
+    return x, status, message, iteration

env-llmeval/lib/python3.10/site-packages/scipy/optimize/_linprog_util.py

@@ -0,0 +1,1522 @@
+"""
+Method agnostic utility functions for linear programming
+"""
+
+import numpy as np
+import scipy.sparse as sps
+from warnings import warn
+from ._optimize import OptimizeWarning
+from scipy.optimize._remove_redundancy import (
+    _remove_redundancy_svd, _remove_redundancy_pivot_sparse,
+    _remove_redundancy_pivot_dense, _remove_redundancy_id
+    )
+from collections import namedtuple
+
+_LPProblem = namedtuple('_LPProblem',
+                        'c A_ub b_ub A_eq b_eq bounds x0 integrality')
+_LPProblem.__new__.__defaults__ = (None,) * 7  # make c the only required arg
+_LPProblem.__doc__ = \
+    """ Represents a linear-programming problem.
+
+    Attributes
+    ----------
+    c : 1D array
+        The coefficients of the linear objective function to be minimized.
+    A_ub : 2D array, optional
+        The inequality constraint matrix. Each row of ``A_ub`` specifies the
+        coefficients of a linear inequality constraint on ``x``.
+    b_ub : 1D array, optional
+        The inequality constraint vector. Each element represents an
+        upper bound on the corresponding value of ``A_ub @ x``.
+    A_eq : 2D array, optional
+        The equality constraint matrix. Each row of ``A_eq`` specifies the
+        coefficients of a linear equality constraint on ``x``.
+    b_eq : 1D array, optional
+        The equality constraint vector. Each element of ``A_eq @ x`` must equal
+        the corresponding element of ``b_eq``.
+    bounds : various valid formats, optional
+        The bounds of ``x``, as ``min`` and ``max`` pairs.
+        If bounds are specified for all N variables separately, valid formats
+        are:
+        * a 2D array (N x 2);
+        * a sequence of N sequences, each with 2 values.
+        If all variables have the same bounds, the bounds can be specified as
+        a 1-D or 2-D array or sequence with 2 scalar values.
+        If all variables have a lower bound of 0 and no upper bound, the bounds
+        parameter can be omitted (or given as None).
+        Absent lower and/or upper bounds can be specified as -numpy.inf (no
+        lower bound), numpy.inf (no upper bound) or None (both).
+    x0 : 1D array, optional
+        Guess values of the decision variables, which will be refined by
+        the optimization algorithm. This argument is currently used only by the
+        'revised simplex' method, and can only be used if `x0` represents a
+        basic feasible solution.
+    integrality : 1-D array or int, optional
+        Indicates the type of integrality constraint on each decision variable.
+
+        ``0`` : Continuous variable; no integrality constraint.
+
+        ``1`` : Integer variable; decision variable must be an integer
+        within `bounds`.
+
+        ``2`` : Semi-continuous variable; decision variable must be within
+        `bounds` or take value ``0``.
+
+        ``3`` : Semi-integer variable; decision variable must be an integer
+        within `bounds` or take value ``0``.
+
+        By default, all variables are continuous.
+
+        For mixed integrality constraints, supply an array of shape `c.shape`.
+        To infer a constraint on each decision variable from shorter inputs,
+        the argument will be broadcasted to `c.shape` using `np.broadcast_to`.
+
+        This argument is currently used only by the ``'highs'`` method and
+        ignored otherwise.
+
+    Notes
+    -----
+    This namedtuple supports 2 ways of initialization:
+    >>> lp1 = _LPProblem(c=[-1, 4], A_ub=[[-3, 1], [1, 2]], b_ub=[6, 4])
+    >>> lp2 = _LPProblem([-1, 4], [[-3, 1], [1, 2]], [6, 4])
+
+    Note that only ``c`` is a required argument here, whereas all other arguments
+    ``A_ub``, ``b_ub``, ``A_eq``, ``b_eq``, ``bounds``, ``x0`` are optional with
+    default values of None.
+    For example, ``A_eq`` and ``b_eq`` can be set without ``A_ub`` or ``b_ub``:
+    >>> lp3 = _LPProblem(c=[-1, 4], A_eq=[[2, 1]], b_eq=[10])
+    """
+
+
+def _check_sparse_inputs(options, meth, A_ub, A_eq):
+    """
+    Check the provided ``A_ub`` and ``A_eq`` matrices conform to the specified
+    optional sparsity variables.
+
+    Parameters
+    ----------
+    A_ub : 2-D array, optional
+        2-D array such that ``A_ub @ x`` gives the values of the upper-bound
+        inequality constraints at ``x``.
+    A_eq : 2-D array, optional
+        2-D array such that ``A_eq @ x`` gives the values of the equality
+        constraints at ``x``.
+    options : dict
+        A dictionary of solver options. All methods accept the following
+        generic options:
+
+            maxiter : int
+                Maximum number of iterations to perform.
+            disp : bool
+                Set to True to print convergence messages.
+
+        For method-specific options, see :func:`show_options('linprog')`.
+    method : str, optional
+        The algorithm used to solve the standard form problem.
+
+    Returns
+    -------
+    A_ub : 2-D array, optional
+        2-D array such that ``A_ub @ x`` gives the values of the upper-bound
+        inequality constraints at ``x``.
+    A_eq : 2-D array, optional
+        2-D array such that ``A_eq @ x`` gives the values of the equality
+        constraints at ``x``.
+    options : dict
+        A dictionary of solver options. All methods accept the following
+        generic options:
+
+            maxiter : int
+                Maximum number of iterations to perform.
+            disp : bool
+                Set to True to print convergence messages.
+
+        For method-specific options, see :func:`show_options('linprog')`.
+    """
+    # This is an undocumented option for unit testing sparse presolve
+    _sparse_presolve = options.pop('_sparse_presolve', False)
+    if _sparse_presolve and A_eq is not None:
+        A_eq = sps.coo_matrix(A_eq)
+    if _sparse_presolve and A_ub is not None:
+        A_ub = sps.coo_matrix(A_ub)
+
+    sparse_constraint = sps.issparse(A_eq) or sps.issparse(A_ub)
+
+    preferred_methods = {"highs", "highs-ds", "highs-ipm"}
+    dense_methods = {"simplex", "revised simplex"}
+    if meth in dense_methods and sparse_constraint:
+        raise ValueError(f"Method '{meth}' does not support sparse "
+                         "constraint matrices. Please consider using one of "
+                         f"{preferred_methods}.")
+
+    sparse = options.get('sparse', False)
+    if not sparse and sparse_constraint and meth == 'interior-point':
+        options['sparse'] = True
+        warn("Sparse constraint matrix detected; setting 'sparse':True.",
+             OptimizeWarning, stacklevel=4)
+    return options, A_ub, A_eq
+
+
+def _format_A_constraints(A, n_x, sparse_lhs=False):
+    """Format the left hand side of the constraints to a 2-D array
+
+    Parameters
+    ----------
+    A : 2-D array
+        2-D array such that ``A @ x`` gives the values of the upper-bound
+        (in)equality constraints at ``x``.
+    n_x : int
+        The number of variables in the linear programming problem.
+    sparse_lhs : bool
+        Whether either of `A_ub` or `A_eq` are sparse. If true return a
+        coo_matrix instead of a numpy array.
+
+    Returns
+    -------
+    np.ndarray or sparse.coo_matrix
+        2-D array such that ``A @ x`` gives the values of the upper-bound
+        (in)equality constraints at ``x``.
+
+    """
+    if sparse_lhs:
+        return sps.coo_matrix(
+            (0, n_x) if A is None else A, dtype=float, copy=True
+        )
+    elif A is None:
+        return np.zeros((0, n_x), dtype=float)
+    else:
+        return np.array(A, dtype=float, copy=True)
+
+
+def _format_b_constraints(b):
+    """Format the upper bounds of the constraints to a 1-D array
+
+    Parameters
+    ----------
+    b : 1-D array
+        1-D array of values representing the upper-bound of each (in)equality
+        constraint (row) in ``A``.
+
+    Returns
+    -------
+    1-D np.array
+        1-D array of values representing the upper-bound of each (in)equality
+        constraint (row) in ``A``.
+
+    """
+    if b is None:
+        return np.array([], dtype=float)
+    b = np.array(b, dtype=float, copy=True).squeeze()
+    return b if b.size != 1 else b.reshape(-1)
+
+
+def _clean_inputs(lp):
+    """
+    Given user inputs for a linear programming problem, return the
+    objective vector, upper bound constraints, equality constraints,
+    and simple bounds in a preferred format.
+
+    Parameters
+    ----------
+    lp : A `scipy.optimize._linprog_util._LPProblem` consisting of the following fields:
+
+        c : 1D array
+            The coefficients of the linear objective function to be minimized.
+        A_ub : 2D array, optional
+            The inequality constraint matrix. Each row of ``A_ub`` specifies the
+            coefficients of a linear inequality constraint on ``x``.
+        b_ub : 1D array, optional
+            The inequality constraint vector. Each element represents an
+            upper bound on the corresponding value of ``A_ub @ x``.
+        A_eq : 2D array, optional
+            The equality constraint matrix. Each row of ``A_eq`` specifies the
+            coefficients of a linear equality constraint on ``x``.
+        b_eq : 1D array, optional
+            The equality constraint vector. Each element of ``A_eq @ x`` must equal
+            the corresponding element of ``b_eq``.
+        bounds : various valid formats, optional
+            The bounds of ``x``, as ``min`` and ``max`` pairs.
+            If bounds are specified for all N variables separately, valid formats are:
+            * a 2D array (2 x N or N x 2);
+            * a sequence of N sequences, each with 2 values.
+            If all variables have the same bounds, a single pair of values can
+            be specified. Valid formats are:
+            * a sequence with 2 scalar values;
+            * a sequence with a single element containing 2 scalar values.
+            If all variables have a lower bound of 0 and no upper bound, the bounds
+            parameter can be omitted (or given as None).
+        x0 : 1D array, optional
+            Guess values of the decision variables, which will be refined by
+            the optimization algorithm. This argument is currently used only by the
+            'revised simplex' method, and can only be used if `x0` represents a
+            basic feasible solution.
+
+    Returns
+    -------
+    lp : A `scipy.optimize._linprog_util._LPProblem` consisting of the following fields:
+
+        c : 1D array
+            The coefficients of the linear objective function to be minimized.
+        A_ub : 2D array, optional
+            The inequality constraint matrix. Each row of ``A_ub`` specifies the
+            coefficients of a linear inequality constraint on ``x``.
+        b_ub : 1D array, optional
+            The inequality constraint vector. Each element represents an
+            upper bound on the corresponding value of ``A_ub @ x``.
+        A_eq : 2D array, optional
+            The equality constraint matrix. Each row of ``A_eq`` specifies the
+            coefficients of a linear equality constraint on ``x``.
+        b_eq : 1D array, optional
+            The equality constraint vector. Each element of ``A_eq @ x`` must equal
+            the corresponding element of ``b_eq``.
+        bounds : 2D array
+            The bounds of ``x``, as ``min`` and ``max`` pairs, one for each of the N
+            elements of ``x``. The N x 2 array contains lower bounds in the first
+            column and upper bounds in the 2nd. Unbounded variables have lower
+            bound -np.inf and/or upper bound np.inf.
+        x0 : 1D array, optional
+            Guess values of the decision variables, which will be refined by
+            the optimization algorithm. This argument is currently used only by the
+            'revised simplex' method, and can only be used if `x0` represents a
+            basic feasible solution.
+
+    """
+    c, A_ub, b_ub, A_eq, b_eq, bounds, x0, integrality = lp
+
+    if c is None:
+        raise TypeError
+
+    try:
+        c = np.array(c, dtype=np.float64, copy=True).squeeze()
+    except ValueError as e:
+        raise TypeError(
+            "Invalid input for linprog: c must be a 1-D array of numerical "
+            "coefficients") from e
+    else:
+        # If c is a single value, convert it to a 1-D array.
+        if c.size == 1:
+            c = c.reshape(-1)
+
+        n_x = len(c)
+        if n_x == 0 or len(c.shape) != 1:
+            raise ValueError(
+                "Invalid input for linprog: c must be a 1-D array and must "
+                "not have more than one non-singleton dimension")
+        if not np.isfinite(c).all():
+            raise ValueError(
+                "Invalid input for linprog: c must not contain values "
+                "inf, nan, or None")
+
+    sparse_lhs = sps.issparse(A_eq) or sps.issparse(A_ub)
+    try:
+        A_ub = _format_A_constraints(A_ub, n_x, sparse_lhs=sparse_lhs)
+    except ValueError as e:
+        raise TypeError(
+            "Invalid input for linprog: A_ub must be a 2-D array "
+            "of numerical values") from e
+    else:
+        n_ub = A_ub.shape[0]
+        if len(A_ub.shape) != 2 or A_ub.shape[1] != n_x:
+            raise ValueError(
+                "Invalid input for linprog: A_ub must have exactly two "
+                "dimensions, and the number of columns in A_ub must be "
+                "equal to the size of c")
+        if (sps.issparse(A_ub) and not np.isfinite(A_ub.data).all()
+                or not sps.issparse(A_ub) and not np.isfinite(A_ub).all()):
+            raise ValueError(
+                "Invalid input for linprog: A_ub must not contain values "
+                "inf, nan, or None")
+
+    try:
+        b_ub = _format_b_constraints(b_ub)
+    except ValueError as e:
+        raise TypeError(
+            "Invalid input for linprog: b_ub must be a 1-D array of "
+            "numerical values, each representing the upper bound of an "
+            "inequality constraint (row) in A_ub") from e
+    else:
+        if b_ub.shape != (n_ub,):
+            raise ValueError(
+                "Invalid input for linprog: b_ub must be a 1-D array; b_ub "
+                "must not have more than one non-singleton dimension and "
+                "the number of rows in A_ub must equal the number of values "
+                "in b_ub")
+        if not np.isfinite(b_ub).all():
+            raise ValueError(
+                "Invalid input for linprog: b_ub must not contain values "
+                "inf, nan, or None")
+
+    try:
+        A_eq = _format_A_constraints(A_eq, n_x, sparse_lhs=sparse_lhs)
+    except ValueError as e:
+        raise TypeError(
+            "Invalid input for linprog: A_eq must be a 2-D array "
+            "of numerical values") from e
+    else:
+        n_eq = A_eq.shape[0]
+        if len(A_eq.shape) != 2 or A_eq.shape[1] != n_x:
+            raise ValueError(
+                "Invalid input for linprog: A_eq must have exactly two "
+                "dimensions, and the number of columns in A_eq must be "
+                "equal to the size of c")
+
+        if (sps.issparse(A_eq) and not np.isfinite(A_eq.data).all()
+                or not sps.issparse(A_eq) and not np.isfinite(A_eq).all()):
+            raise ValueError(
+                "Invalid input for linprog: A_eq must not contain values "
+                "inf, nan, or None")
+
+    try:
+        b_eq = _format_b_constraints(b_eq)
+    except ValueError as e:
+        raise TypeError(
+            "Invalid input for linprog: b_eq must be a dense, 1-D array of "
+            "numerical values, each representing the right hand side of an "
+            "equality constraint (row) in A_eq") from e
+    else:
+        if b_eq.shape != (n_eq,):
+            raise ValueError(
+                "Invalid input for linprog: b_eq must be a 1-D array; b_eq "
+                "must not have more than one non-singleton dimension and "
+                "the number of rows in A_eq must equal the number of values "
+                "in b_eq")
+        if not np.isfinite(b_eq).all():
+            raise ValueError(
+                "Invalid input for linprog: b_eq must not contain values "
+                "inf, nan, or None")
+
+    # x0 gives a (optional) starting solution to the solver. If x0 is None,
+    # skip the checks. Initial solution will be generated automatically.
+    if x0 is not None:
+        try:
+            x0 = np.array(x0, dtype=float, copy=True).squeeze()
+        except ValueError as e:
+            raise TypeError(
+                "Invalid input for linprog: x0 must be a 1-D array of "
+                "numerical coefficients") from e
+        if x0.ndim == 0:
+            x0 = x0.reshape(-1)
+        if len(x0) == 0 or x0.ndim != 1:
+            raise ValueError(
+                "Invalid input for linprog: x0 should be a 1-D array; it "
+                "must not have more than one non-singleton dimension")
+        if not x0.size == c.size:
+            raise ValueError(
+                "Invalid input for linprog: x0 and c should contain the "
+                "same number of elements")
+        if not np.isfinite(x0).all():
+            raise ValueError(
+                "Invalid input for linprog: x0 must not contain values "
+                "inf, nan, or None")
+
+    # Bounds can be one of these formats:
+    # (1) a 2-D array or sequence, with shape N x 2
+    # (2) a 1-D or 2-D sequence or array with 2 scalars
+    # (3) None (or an empty sequence or array)
+    # Unspecified bounds can be represented by None or (-)np.inf.
+    # All formats are converted into a N x 2 np.array with (-)np.inf where
+    # bounds are unspecified.
+
+    # Prepare clean bounds array
+    bounds_clean = np.zeros((n_x, 2), dtype=float)
+
+    # Convert to a numpy array.
+    # np.array(..,dtype=float) raises an error if dimensions are inconsistent
+    # or if there are invalid data types in bounds. Just add a linprog prefix
+    # to the error and re-raise.
+    # Creating at least a 2-D array simplifies the cases to distinguish below.
+    if bounds is None or np.array_equal(bounds, []) or np.array_equal(bounds, [[]]):
+        bounds = (0, np.inf)
+    try:
+        bounds_conv = np.atleast_2d(np.array(bounds, dtype=float))
+    except ValueError as e:
+        raise ValueError(
+            "Invalid input for linprog: unable to interpret bounds, "
+            "check values and dimensions: " + e.args[0]) from e
+    except TypeError as e:
+        raise TypeError(
+            "Invalid input for linprog: unable to interpret bounds, "
+            "check values and dimensions: " + e.args[0]) from e
+
+    # Check bounds options
+    bsh = bounds_conv.shape
+    if len(bsh) > 2:
+        # Do not try to handle multidimensional bounds input
+        raise ValueError(
+            "Invalid input for linprog: provide a 2-D array for bounds, "
+            f"not a {len(bsh):d}-D array.")
+    elif np.all(bsh == (n_x, 2)):
+        # Regular N x 2 array
+        bounds_clean = bounds_conv
+    elif (np.all(bsh == (2, 1)) or np.all(bsh == (1, 2))):
+        # 2 values: interpret as overall lower and upper bound
+        bounds_flat = bounds_conv.flatten()
+        bounds_clean[:, 0] = bounds_flat[0]
+        bounds_clean[:, 1] = bounds_flat[1]
+    elif np.all(bsh == (2, n_x)):
+        # Reject a 2 x N array
+        raise ValueError(
+            f"Invalid input for linprog: provide a {n_x:d} x 2 array for bounds, "
+            f"not a 2 x {n_x:d} array.")
+    else:
+        raise ValueError(
+            "Invalid input for linprog: unable to interpret bounds with this "
+            f"dimension tuple: {bsh}.")
+
+    # The process above creates nan-s where the input specified None
+    # Convert the nan-s in the 1st column to -np.inf and in the 2nd column
+    # to np.inf
+    i_none = np.isnan(bounds_clean[:, 0])
+    bounds_clean[i_none, 0] = -np.inf
+    i_none = np.isnan(bounds_clean[:, 1])
+    bounds_clean[i_none, 1] = np.inf
+
+    return _LPProblem(c, A_ub, b_ub, A_eq, b_eq, bounds_clean, x0, integrality)
+
+
+def _presolve(lp, rr, rr_method, tol=1e-9):
+    """
+    Given inputs for a linear programming problem in preferred format,
+    presolve the problem: identify trivial infeasibilities, redundancies,
+    and unboundedness, tighten bounds where possible, and eliminate fixed
+    variables.
+
+    Parameters
+    ----------
+    lp : A `scipy.optimize._linprog_util._LPProblem` consisting of the following fields:
+
+        c : 1D array
+            The coefficients of the linear objective function to be minimized.
+        A_ub : 2D array, optional
+            The inequality constraint matrix. Each row of ``A_ub`` specifies the
+            coefficients of a linear inequality constraint on ``x``.
+        b_ub : 1D array, optional
+            The inequality constraint vector. Each element represents an
+            upper bound on the corresponding value of ``A_ub @ x``.
+        A_eq : 2D array, optional
+            The equality constraint matrix. Each row of ``A_eq`` specifies the
+            coefficients of a linear equality constraint on ``x``.
+        b_eq : 1D array, optional
+            The equality constraint vector. Each element of ``A_eq @ x`` must equal
+            the corresponding element of ``b_eq``.
+        bounds : 2D array
+            The bounds of ``x``, as ``min`` and ``max`` pairs, one for each of the N
+            elements of ``x``. The N x 2 array contains lower bounds in the first
+            column and upper bounds in the 2nd. Unbounded variables have lower
+            bound -np.inf and/or upper bound np.inf.
+        x0 : 1D array, optional
+            Guess values of the decision variables, which will be refined by
+            the optimization algorithm. This argument is currently used only by the
+            'revised simplex' method, and can only be used if `x0` represents a
+            basic feasible solution.
+
+    rr : bool
+        If ``True`` attempts to eliminate any redundant rows in ``A_eq``.
+        Set False if ``A_eq`` is known to be of full row rank, or if you are
+        looking for a potential speedup (at the expense of reliability).
+    rr_method : string
+        Method used to identify and remove redundant rows from the
+        equality constraint matrix after presolve.
+    tol : float
+        The tolerance which determines when a solution is "close enough" to
+        zero in Phase 1 to be considered a basic feasible solution or close
+        enough to positive to serve as an optimal solution.
+
+    Returns
+    -------
+    lp : A `scipy.optimize._linprog_util._LPProblem` consisting of the following fields:
+
+        c : 1D array
+            The coefficients of the linear objective function to be minimized.
+        A_ub : 2D array, optional
+            The inequality constraint matrix. Each row of ``A_ub`` specifies the
+            coefficients of a linear inequality constraint on ``x``.
+        b_ub : 1D array, optional
+            The inequality constraint vector. Each element represents an
+            upper bound on the corresponding value of ``A_ub @ x``.
+        A_eq : 2D array, optional
+            The equality constraint matrix. Each row of ``A_eq`` specifies the
+            coefficients of a linear equality constraint on ``x``.
+        b_eq : 1D array, optional
+            The equality constraint vector. Each element of ``A_eq @ x`` must equal
+            the corresponding element of ``b_eq``.
+        bounds : 2D array
+            The bounds of ``x``, as ``min`` and ``max`` pairs, possibly tightened.
+        x0 : 1D array, optional
+            Guess values of the decision variables, which will be refined by
+            the optimization algorithm. This argument is currently used only by the
+            'revised simplex' method, and can only be used if `x0` represents a
+            basic feasible solution.
+
+    c0 : 1D array
+        Constant term in objective function due to fixed (and eliminated)
+        variables.
+    x : 1D array
+        Solution vector (when the solution is trivial and can be determined
+        in presolve)
+    revstack: list of functions
+        the functions in the list reverse the operations of _presolve()
+        the function signature is x_org = f(x_mod), where x_mod is the result
+        of a presolve step and x_org the value at the start of the step
+        (currently, the revstack contains only one function)
+    complete: bool
+        Whether the solution is complete (solved or determined to be infeasible
+        or unbounded in presolve)
+    status : int
+        An integer representing the exit status of the optimization::
+
+         0 : Optimization terminated successfully
+         1 : Iteration limit reached
+         2 : Problem appears to be infeasible
+         3 : Problem appears to be unbounded
+         4 : Serious numerical difficulties encountered
+
+    message : str
+        A string descriptor of the exit status of the optimization.
+
+    References
+    ----------
+    .. [5] Andersen, Erling D. "Finding all linearly dependent rows in
+           large-scale linear programming." Optimization Methods and Software
+           6.3 (1995): 219-227.
+    .. [8] Andersen, Erling D., and Knud D. Andersen. "Presolving in linear
+           programming." Mathematical Programming 71.2 (1995): 221-245.
+
+    """
+    # ideas from Reference [5] by Andersen and Andersen
+    # however, unlike the reference, this is performed before converting
+    # problem to standard form
+    # There are a few advantages:
+    #  * artificial variables have not been added, so matrices are smaller
+    #  * bounds have not been converted to constraints yet. (It is better to
+    #    do that after presolve because presolve may adjust the simple bounds.)
+    # There are many improvements that can be made, namely:
+    #  * implement remaining checks from [5]
+    #  * loop presolve until no additional changes are made
+    #  * implement additional efficiency improvements in redundancy removal [2]
+
+    c, A_ub, b_ub, A_eq, b_eq, bounds, x0, _ = lp
+
+    revstack = []               # record of variables eliminated from problem
+    # constant term in cost function may be added if variables are eliminated
+    c0 = 0
+    complete = False        # complete is True if detected infeasible/unbounded
+    x = np.zeros(c.shape)   # this is solution vector if completed in presolve
+
+    status = 0              # all OK unless determined otherwise
+    message = ""
+
+    # Lower and upper bounds. Copy to prevent feedback.
+    lb = bounds[:, 0].copy()
+    ub = bounds[:, 1].copy()
+
+    m_eq, n = A_eq.shape
+    m_ub, n = A_ub.shape
+
+    if (rr_method is not None
+            and rr_method.lower() not in {"svd", "pivot", "id"}):
+        message = ("'" + str(rr_method) + "' is not a valid option "
+                   "for redundancy removal. Valid options are 'SVD', "
+                   "'pivot', and 'ID'.")
+        raise ValueError(message)
+
+    if sps.issparse(A_eq):
+        A_eq = A_eq.tocsr()
+        A_ub = A_ub.tocsr()
+
+        def where(A):
+            return A.nonzero()
+
+        vstack = sps.vstack
+    else:
+        where = np.where
+        vstack = np.vstack
+
+    # upper bounds > lower bounds
+    if np.any(ub < lb) or np.any(lb == np.inf) or np.any(ub == -np.inf):
+        status = 2
+        message = ("The problem is (trivially) infeasible since one "
+                   "or more upper bounds are smaller than the corresponding "
+                   "lower bounds, a lower bound is np.inf or an upper bound "
+                   "is -np.inf.")
+        complete = True
+        return (_LPProblem(c, A_ub, b_ub, A_eq, b_eq, bounds, x0),
+                c0, x, revstack, complete, status, message)
+
+    # zero row in equality constraints
+    zero_row = np.array(np.sum(A_eq != 0, axis=1) == 0).flatten()
+    if np.any(zero_row):
+        if np.any(
+            np.logical_and(
+                zero_row,
+                np.abs(b_eq) > tol)):  # test_zero_row_1
+            # infeasible if RHS is not zero
+            status = 2
+            message = ("The problem is (trivially) infeasible due to a row "
+                       "of zeros in the equality constraint matrix with a "
+                       "nonzero corresponding constraint value.")
+            complete = True
+            return (_LPProblem(c, A_ub, b_ub, A_eq, b_eq, bounds, x0),
+                    c0, x, revstack, complete, status, message)
+        else:  # test_zero_row_2
+            # if RHS is zero, we can eliminate this equation entirely
+            A_eq = A_eq[np.logical_not(zero_row), :]
+            b_eq = b_eq[np.logical_not(zero_row)]
+
+    # zero row in inequality constraints
+    zero_row = np.array(np.sum(A_ub != 0, axis=1) == 0).flatten()
+    if np.any(zero_row):
+        if np.any(np.logical_and(zero_row, b_ub < -tol)):  # test_zero_row_1
+            # infeasible if RHS is less than zero (because LHS is zero)
+            status = 2
+            message = ("The problem is (trivially) infeasible due to a row "
+                       "of zeros in the equality constraint matrix with a "
+                       "nonzero corresponding  constraint value.")
+            complete = True
+            return (_LPProblem(c, A_ub, b_ub, A_eq, b_eq, bounds, x0),
+                    c0, x, revstack, complete, status, message)
+        else:  # test_zero_row_2
+            # if LHS is >= 0, we can eliminate this constraint entirely
+            A_ub = A_ub[np.logical_not(zero_row), :]
+            b_ub = b_ub[np.logical_not(zero_row)]
+
+    # zero column in (both) constraints
+    # this indicates that a variable isn't constrained and can be removed
+    A = vstack((A_eq, A_ub))
+    if A.shape[0] > 0:
+        zero_col = np.array(np.sum(A != 0, axis=0) == 0).flatten()
+        # variable will be at upper or lower bound, depending on objective
+        x[np.logical_and(zero_col, c < 0)] = ub[
+            np.logical_and(zero_col, c < 0)]
+        x[np.logical_and(zero_col, c > 0)] = lb[
+            np.logical_and(zero_col, c > 0)]
+        if np.any(np.isinf(x)):  # if an unconstrained variable has no bound
+            status = 3
+            message = ("If feasible, the problem is (trivially) unbounded "
+                       "due  to a zero column in the constraint matrices. If "
+                       "you wish to check whether the problem is infeasible, "
+                       "turn presolve off.")
+            complete = True
+            return (_LPProblem(c, A_ub, b_ub, A_eq, b_eq, bounds, x0),
+                    c0, x, revstack, complete, status, message)
+        # variables will equal upper/lower bounds will be removed later
+        lb[np.logical_and(zero_col, c < 0)] = ub[
+            np.logical_and(zero_col, c < 0)]
+        ub[np.logical_and(zero_col, c > 0)] = lb[
+            np.logical_and(zero_col, c > 0)]
+
+    # row singleton in equality constraints
+    # this fixes a variable and removes the constraint
+    singleton_row = np.array(np.sum(A_eq != 0, axis=1) == 1).flatten()
+    rows = where(singleton_row)[0]
+    cols = where(A_eq[rows, :])[1]
+    if len(rows) > 0:
+        for row, col in zip(rows, cols):
+            val = b_eq[row] / A_eq[row, col]
+            if not lb[col] - tol <= val <= ub[col] + tol:
+                # infeasible if fixed value is not within bounds
+                status = 2
+                message = ("The problem is (trivially) infeasible because a "
+                           "singleton row in the equality constraints is "
+                           "inconsistent with the bounds.")
+                complete = True
+                return (_LPProblem(c, A_ub, b_ub, A_eq, b_eq, bounds, x0),
+                        c0, x, revstack, complete, status, message)
+            else:
+                # sets upper and lower bounds at that fixed value - variable
+                # will be removed later
+                lb[col] = val
+                ub[col] = val
+        A_eq = A_eq[np.logical_not(singleton_row), :]
+        b_eq = b_eq[np.logical_not(singleton_row)]
+
+    # row singleton in inequality constraints
+    # this indicates a simple bound and the constraint can be removed
+    # simple bounds may be adjusted here
+    # After all of the simple bound information is combined here, get_Abc will
+    # turn the simple bounds into constraints
+    singleton_row = np.array(np.sum(A_ub != 0, axis=1) == 1).flatten()
+    cols = where(A_ub[singleton_row, :])[1]
+    rows = where(singleton_row)[0]
+    if len(rows) > 0:
+        for row, col in zip(rows, cols):
+            val = b_ub[row] / A_ub[row, col]
+            if A_ub[row, col] > 0:  # upper bound
+                if val < lb[col] - tol:  # infeasible
+                    complete = True
+                elif val < ub[col]:  # new upper bound
+                    ub[col] = val
+            else:  # lower bound
+                if val > ub[col] + tol:  # infeasible
+                    complete = True
+                elif val > lb[col]:  # new lower bound
+                    lb[col] = val
+            if complete:
+                status = 2
+                message = ("The problem is (trivially) infeasible because a "
+                           "singleton row in the upper bound constraints is "
+                           "inconsistent with the bounds.")
+                return (_LPProblem(c, A_ub, b_ub, A_eq, b_eq, bounds, x0),
+                        c0, x, revstack, complete, status, message)
+        A_ub = A_ub[np.logical_not(singleton_row), :]
+        b_ub = b_ub[np.logical_not(singleton_row)]
+
+    # identical bounds indicate that variable can be removed
+    i_f = np.abs(lb - ub) < tol   # indices of "fixed" variables
+    i_nf = np.logical_not(i_f)  # indices of "not fixed" variables
+
+    # test_bounds_equal_but_infeasible
+    if np.all(i_f):  # if bounds define solution, check for consistency
+        residual = b_eq - A_eq.dot(lb)
+        slack = b_ub - A_ub.dot(lb)
+        if ((A_ub.size > 0 and np.any(slack < 0)) or
+                (A_eq.size > 0 and not np.allclose(residual, 0))):
+            status = 2
+            message = ("The problem is (trivially) infeasible because the "
+                       "bounds fix all variables to values inconsistent with "
+                       "the constraints")
+            complete = True
+            return (_LPProblem(c, A_ub, b_ub, A_eq, b_eq, bounds, x0),
+                    c0, x, revstack, complete, status, message)
+
+    ub_mod = ub
+    lb_mod = lb
+    if np.any(i_f):
+        c0 += c[i_f].dot(lb[i_f])
+        b_eq = b_eq - A_eq[:, i_f].dot(lb[i_f])
+        b_ub = b_ub - A_ub[:, i_f].dot(lb[i_f])
+        c = c[i_nf]
+        x_undo = lb[i_f]  # not x[i_f], x is just zeroes
+        x = x[i_nf]
+        # user guess x0 stays separate from presolve solution x
+        if x0 is not None:
+            x0 = x0[i_nf]
+        A_eq = A_eq[:, i_nf]
+        A_ub = A_ub[:, i_nf]
+        # modify bounds
+        lb_mod = lb[i_nf]
+        ub_mod = ub[i_nf]
+
+        def rev(x_mod):
+            # Function to restore x: insert x_undo into x_mod.
+            # When elements have been removed at positions k1, k2, k3, ...
+            # then these must be replaced at (after) positions k1-1, k2-2,
+            # k3-3, ... in the modified array to recreate the original
+            i = np.flatnonzero(i_f)
+            # Number of variables to restore
+            N = len(i)
+            index_offset = np.arange(N)
+            # Create insert indices
+            insert_indices = i - index_offset
+            x_rev = np.insert(x_mod.astype(float), insert_indices, x_undo)
+            return x_rev
+
+        # Use revstack as a list of functions, currently just this one.
+        revstack.append(rev)
+
+    # no constraints indicates that problem is trivial
+    if A_eq.size == 0 and A_ub.size == 0:
+        b_eq = np.array([])
+        b_ub = np.array([])
+        # test_empty_constraint_1
+        if c.size == 0:
+            status = 0
+            message = ("The solution was determined in presolve as there are "
+                       "no non-trivial constraints.")
+        elif (np.any(np.logical_and(c < 0, ub_mod == np.inf)) or
+              np.any(np.logical_and(c > 0, lb_mod == -np.inf))):
+            # test_no_constraints()
+            # test_unbounded_no_nontrivial_constraints_1
+            # test_unbounded_no_nontrivial_constraints_2
+            status = 3
+            message = ("The problem is (trivially) unbounded "
+                       "because there are no non-trivial constraints and "
+                       "a) at least one decision variable is unbounded "
+                       "above and its corresponding cost is negative, or "
+                       "b) at least one decision variable is unbounded below "
+                       "and its corresponding cost is positive. ")
+        else:  # test_empty_constraint_2
+            status = 0
+            message = ("The solution was determined in presolve as there are "
+                       "no non-trivial constraints.")
+        complete = True
+        x[c < 0] = ub_mod[c < 0]
+        x[c > 0] = lb_mod[c > 0]
+        # where c is zero, set x to a finite bound or zero
+        x_zero_c = ub_mod[c == 0]
+        x_zero_c[np.isinf(x_zero_c)] = ub_mod[c == 0][np.isinf(x_zero_c)]
+        x_zero_c[np.isinf(x_zero_c)] = 0
+        x[c == 0] = x_zero_c
+        # if this is not the last step of presolve, should convert bounds back
+        # to array and return here
+
+    # Convert modified lb and ub back into N x 2 bounds
+    bounds = np.hstack((lb_mod[:, np.newaxis], ub_mod[:, np.newaxis]))
+
+    # remove redundant (linearly dependent) rows from equality constraints
+    n_rows_A = A_eq.shape[0]
+    redundancy_warning = ("A_eq does not appear to be of full row rank. To "
+                          "improve performance, check the problem formulation "
+                          "for redundant equality constraints.")
+    if (sps.issparse(A_eq)):
+        if rr and A_eq.size > 0:  # TODO: Fast sparse rank check?
+            rr_res = _remove_redundancy_pivot_sparse(A_eq, b_eq)
+            A_eq, b_eq, status, message = rr_res
+            if A_eq.shape[0] < n_rows_A:
+                warn(redundancy_warning, OptimizeWarning, stacklevel=1)
+            if status != 0:
+                complete = True
+        return (_LPProblem(c, A_ub, b_ub, A_eq, b_eq, bounds, x0),
+                c0, x, revstack, complete, status, message)
+
+    # This is a wild guess for which redundancy removal algorithm will be
+    # faster. More testing would be good.
+    small_nullspace = 5
+    if rr and A_eq.size > 0:
+        try:  # TODO: use results of first SVD in _remove_redundancy_svd
+            rank = np.linalg.matrix_rank(A_eq)
+        # oh well, we'll have to go with _remove_redundancy_pivot_dense
+        except Exception:
+            rank = 0
+    if rr and A_eq.size > 0 and rank < A_eq.shape[0]:
+        warn(redundancy_warning, OptimizeWarning, stacklevel=3)
+        dim_row_nullspace = A_eq.shape[0]-rank
+        if rr_method is None:
+            if dim_row_nullspace <= small_nullspace:
+                rr_res = _remove_redundancy_svd(A_eq, b_eq)
+                A_eq, b_eq, status, message = rr_res
+            if dim_row_nullspace > small_nullspace or status == 4:
+                rr_res = _remove_redundancy_pivot_dense(A_eq, b_eq)
+                A_eq, b_eq, status, message = rr_res
+
+        else:
+            rr_method = rr_method.lower()
+            if rr_method == "svd":
+                rr_res = _remove_redundancy_svd(A_eq, b_eq)
+                A_eq, b_eq, status, message = rr_res
+            elif rr_method == "pivot":
+                rr_res = _remove_redundancy_pivot_dense(A_eq, b_eq)
+                A_eq, b_eq, status, message = rr_res
+            elif rr_method == "id":
+                rr_res = _remove_redundancy_id(A_eq, b_eq, rank)
+                A_eq, b_eq, status, message = rr_res
+            else:  # shouldn't get here; option validity checked above
+                pass
+        if A_eq.shape[0] < rank:
+            message = ("Due to numerical issues, redundant equality "
+                       "constraints could not be removed automatically. "
+                       "Try providing your constraint matrices as sparse "
+                       "matrices to activate sparse presolve, try turning "
+                       "off redundancy removal, or try turning off presolve "
+                       "altogether.")
+            status = 4
+        if status != 0:
+            complete = True
+    return (_LPProblem(c, A_ub, b_ub, A_eq, b_eq, bounds, x0),
+            c0, x, revstack, complete, status, message)
+
+
+def _parse_linprog(lp, options, meth):
+    """
+    Parse the provided linear programming problem
+
+    ``_parse_linprog`` employs two main steps ``_check_sparse_inputs`` and
+    ``_clean_inputs``. ``_check_sparse_inputs`` checks for sparsity in the
+    provided constraints (``A_ub`` and ``A_eq) and if these match the provided
+    sparsity optional values.
+
+    ``_clean inputs`` checks of the provided inputs. If no violations are
+    identified the objective vector, upper bound constraints, equality
+    constraints, and simple bounds are returned in the expected format.
+
+    Parameters
+    ----------
+    lp : A `scipy.optimize._linprog_util._LPProblem` consisting of the following fields:
+
+        c : 1D array
+            The coefficients of the linear objective function to be minimized.
+        A_ub : 2D array, optional
+            The inequality constraint matrix. Each row of ``A_ub`` specifies the
+            coefficients of a linear inequality constraint on ``x``.
+        b_ub : 1D array, optional
+            The inequality constraint vector. Each element represents an
+            upper bound on the corresponding value of ``A_ub @ x``.
+        A_eq : 2D array, optional
+            The equality constraint matrix. Each row of ``A_eq`` specifies the
+            coefficients of a linear equality constraint on ``x``.
+        b_eq : 1D array, optional
+            The equality constraint vector. Each element of ``A_eq @ x`` must equal
+            the corresponding element of ``b_eq``.
+        bounds : various valid formats, optional
+            The bounds of ``x``, as ``min`` and ``max`` pairs.
+            If bounds are specified for all N variables separately, valid formats are:
+            * a 2D array (2 x N or N x 2);
+            * a sequence of N sequences, each with 2 values.
+            If all variables have the same bounds, a single pair of values can
+            be specified. Valid formats are:
+            * a sequence with 2 scalar values;
+            * a sequence with a single element containing 2 scalar values.
+            If all variables have a lower bound of 0 and no upper bound, the bounds
+            parameter can be omitted (or given as None).
+        x0 : 1D array, optional
+            Guess values of the decision variables, which will be refined by
+            the optimization algorithm. This argument is currently used only by the
+            'revised simplex' method, and can only be used if `x0` represents a
+            basic feasible solution.
+
+    options : dict
+        A dictionary of solver options. All methods accept the following
+        generic options:
+
+            maxiter : int
+                Maximum number of iterations to perform.
+            disp : bool
+                Set to True to print convergence messages.
+
+        For method-specific options, see :func:`show_options('linprog')`.
+
+    Returns
+    -------
+    lp : A `scipy.optimize._linprog_util._LPProblem` consisting of the following fields:
+
+        c : 1D array
+            The coefficients of the linear objective function to be minimized.
+        A_ub : 2D array, optional
+            The inequality constraint matrix. Each row of ``A_ub`` specifies the
+            coefficients of a linear inequality constraint on ``x``.
+        b_ub : 1D array, optional
+            The inequality constraint vector. Each element represents an
+            upper bound on the corresponding value of ``A_ub @ x``.
+        A_eq : 2D array, optional
+            The equality constraint matrix. Each row of ``A_eq`` specifies the
+            coefficients of a linear equality constraint on ``x``.
+        b_eq : 1D array, optional
+            The equality constraint vector. Each element of ``A_eq @ x`` must equal
+            the corresponding element of ``b_eq``.
+        bounds : 2D array
+            The bounds of ``x``, as ``min`` and ``max`` pairs, one for each of the N
+            elements of ``x``. The N x 2 array contains lower bounds in the first
+            column and upper bounds in the 2nd. Unbounded variables have lower
+            bound -np.inf and/or upper bound np.inf.
+        x0 : 1D array, optional
+            Guess values of the decision variables, which will be refined by
+            the optimization algorithm. This argument is currently used only by the
+            'revised simplex' method, and can only be used if `x0` represents a
+            basic feasible solution.
+
+    options : dict, optional
+        A dictionary of solver options. All methods accept the following
+        generic options:
+
+            maxiter : int
+                Maximum number of iterations to perform.
+            disp : bool
+                Set to True to print convergence messages.
+
+        For method-specific options, see :func:`show_options('linprog')`.
+
+    """
+    if options is None:
+        options = {}
+
+    solver_options = {k: v for k, v in options.items()}
+    solver_options, A_ub, A_eq = _check_sparse_inputs(solver_options, meth,
+                                                      lp.A_ub, lp.A_eq)
+    # Convert lists to numpy arrays, etc...
+    lp = _clean_inputs(lp._replace(A_ub=A_ub, A_eq=A_eq))
+    return lp, solver_options
+
+
+def _get_Abc(lp, c0):
+    """
+    Given a linear programming problem of the form:
+
+    Minimize::
+
+        c @ x
+
+    Subject to::
+
+        A_ub @ x <= b_ub
+        A_eq @ x == b_eq
+         lb <= x <= ub
+
+    where ``lb = 0`` and ``ub = None`` unless set in ``bounds``.
+
+    Return the problem in standard form:
+
+    Minimize::
+
+        c @ x
+
+    Subject to::
+
+        A @ x == b
+            x >= 0
+
+    by adding slack variables and making variable substitutions as necessary.
+
+    Parameters
+    ----------
+    lp : A `scipy.optimize._linprog_util._LPProblem` consisting of the following fields:
+
+        c : 1D array
+            The coefficients of the linear objective function to be minimized.
+        A_ub : 2D array, optional
+            The inequality constraint matrix. Each row of ``A_ub`` specifies the
+            coefficients of a linear inequality constraint on ``x``.
+        b_ub : 1D array, optional
+            The inequality constraint vector. Each element represents an
+            upper bound on the corresponding value of ``A_ub @ x``.
+        A_eq : 2D array, optional
+            The equality constraint matrix. Each row of ``A_eq`` specifies the
+            coefficients of a linear equality constraint on ``x``.
+        b_eq : 1D array, optional
+            The equality constraint vector. Each element of ``A_eq @ x`` must equal
+            the corresponding element of ``b_eq``.
+        bounds : 2D array
+            The bounds of ``x``, lower bounds in the 1st column, upper
+            bounds in the 2nd column. The bounds are possibly tightened
+            by the presolve procedure.
+        x0 : 1D array, optional
+            Guess values of the decision variables, which will be refined by
+            the optimization algorithm. This argument is currently used only by the
+            'revised simplex' method, and can only be used if `x0` represents a
+            basic feasible solution.
+
+    c0 : float
+        Constant term in objective function due to fixed (and eliminated)
+        variables.
+
+    Returns
+    -------
+    A : 2-D array
+        2-D array such that ``A`` @ ``x``, gives the values of the equality
+        constraints at ``x``.
+    b : 1-D array
+        1-D array of values representing the RHS of each equality constraint
+        (row) in A (for standard form problem).
+    c : 1-D array
+        Coefficients of the linear objective function to be minimized (for
+        standard form problem).
+    c0 : float
+        Constant term in objective function due to fixed (and eliminated)
+        variables.
+    x0 : 1-D array
+        Starting values of the independent variables, which will be refined by
+        the optimization algorithm
+
+    References
+    ----------
+    .. [9] Bertsimas, Dimitris, and J. Tsitsiklis. "Introduction to linear
+           programming." Athena Scientific 1 (1997): 997.
+
+    """
+    c, A_ub, b_ub, A_eq, b_eq, bounds, x0, integrality = lp
+
+    if sps.issparse(A_eq):
+        sparse = True
+        A_eq = sps.csr_matrix(A_eq)
+        A_ub = sps.csr_matrix(A_ub)
+
+        def hstack(blocks):
+            return sps.hstack(blocks, format="csr")
+
+        def vstack(blocks):
+            return sps.vstack(blocks, format="csr")
+
+        zeros = sps.csr_matrix
+        eye = sps.eye
+    else:
+        sparse = False
+        hstack = np.hstack
+        vstack = np.vstack
+        zeros = np.zeros
+        eye = np.eye
+
+    # Variables lbs and ubs (see below) may be changed, which feeds back into
+    # bounds, so copy.
+    bounds = np.array(bounds, copy=True)
+
+    # modify problem such that all variables have only non-negativity bounds
+    lbs = bounds[:, 0]
+    ubs = bounds[:, 1]
+    m_ub, n_ub = A_ub.shape
+
+    lb_none = np.equal(lbs, -np.inf)
+    ub_none = np.equal(ubs, np.inf)
+    lb_some = np.logical_not(lb_none)
+    ub_some = np.logical_not(ub_none)
+
+    # unbounded below: substitute xi = -xi' (unbounded above)
+    # if -inf <= xi <= ub, then -ub <= -xi <= inf, so swap and invert bounds
+    l_nolb_someub = np.logical_and(lb_none, ub_some)
+    i_nolb = np.nonzero(l_nolb_someub)[0]
+    lbs[l_nolb_someub], ubs[l_nolb_someub] = (
+        -ubs[l_nolb_someub], -lbs[l_nolb_someub])
+    lb_none = np.equal(lbs, -np.inf)
+    ub_none = np.equal(ubs, np.inf)
+    lb_some = np.logical_not(lb_none)
+    ub_some = np.logical_not(ub_none)
+    c[i_nolb] *= -1
+    if x0 is not None:
+        x0[i_nolb] *= -1
+    if len(i_nolb) > 0:
+        if A_ub.shape[0] > 0:  # sometimes needed for sparse arrays... weird
+            A_ub[:, i_nolb] *= -1
+        if A_eq.shape[0] > 0:
+            A_eq[:, i_nolb] *= -1
+
+    # upper bound: add inequality constraint
+    i_newub, = ub_some.nonzero()
+    ub_newub = ubs[ub_some]
+    n_bounds = len(i_newub)
+    if n_bounds > 0:
+        shape = (n_bounds, A_ub.shape[1])
+        if sparse:
+            idxs = (np.arange(n_bounds), i_newub)
+            A_ub = vstack((A_ub, sps.csr_matrix((np.ones(n_bounds), idxs),
+                                                shape=shape)))
+        else:
+            A_ub = vstack((A_ub, np.zeros(shape)))
+            A_ub[np.arange(m_ub, A_ub.shape[0]), i_newub] = 1
+        b_ub = np.concatenate((b_ub, np.zeros(n_bounds)))
+        b_ub[m_ub:] = ub_newub
+
+    A1 = vstack((A_ub, A_eq))
+    b = np.concatenate((b_ub, b_eq))
+    c = np.concatenate((c, np.zeros((A_ub.shape[0],))))
+    if x0 is not None:
+        x0 = np.concatenate((x0, np.zeros((A_ub.shape[0],))))
+    # unbounded: substitute xi = xi+ + xi-
+    l_free = np.logical_and(lb_none, ub_none)
+    i_free = np.nonzero(l_free)[0]
+    n_free = len(i_free)
+    c = np.concatenate((c, np.zeros(n_free)))
+    if x0 is not None:
+        x0 = np.concatenate((x0, np.zeros(n_free)))
+    A1 = hstack((A1[:, :n_ub], -A1[:, i_free]))
+    c[n_ub:n_ub+n_free] = -c[i_free]
+    if x0 is not None:
+        i_free_neg = x0[i_free] < 0
+        x0[np.arange(n_ub, A1.shape[1])[i_free_neg]] = -x0[i_free[i_free_neg]]
+        x0[i_free[i_free_neg]] = 0
+
+    # add slack variables
+    A2 = vstack([eye(A_ub.shape[0]), zeros((A_eq.shape[0], A_ub.shape[0]))])
+
+    A = hstack([A1, A2])
+
+    # lower bound: substitute xi = xi' + lb
+    # now there is a constant term in objective
+    i_shift = np.nonzero(lb_some)[0]
+    lb_shift = lbs[lb_some].astype(float)
+    c0 += np.sum(lb_shift * c[i_shift])
+    if sparse:
+        b = b.reshape(-1, 1)
+        A = A.tocsc()
+        b -= (A[:, i_shift] * sps.diags(lb_shift)).sum(axis=1)
+        b = b.ravel()
+    else:
+        b -= (A[:, i_shift] * lb_shift).sum(axis=1)
+    if x0 is not None:
+        x0[i_shift] -= lb_shift
+
+    return A, b, c, c0, x0
+
+
+def _round_to_power_of_two(x):
+    """
+    Round elements of the array to the nearest power of two.
+    """
+    return 2**np.around(np.log2(x))
+
+
+def _autoscale(A, b, c, x0):
+    """
+    Scales the problem according to equilibration from [12].
+    Also normalizes the right hand side vector by its maximum element.
+    """
+    m, n = A.shape
+
+    C = 1
+    R = 1
+
+    if A.size > 0:
+
+        R = np.max(np.abs(A), axis=1)
+        if sps.issparse(A):
+            R = R.toarray().flatten()
+        R[R == 0] = 1
+        R = 1/_round_to_power_of_two(R)
+        A = sps.diags(R)*A if sps.issparse(A) else A*R.reshape(m, 1)
+        b = b*R
+
+        C = np.max(np.abs(A), axis=0)
+        if sps.issparse(A):
+            C = C.toarray().flatten()
+        C[C == 0] = 1
+        C = 1/_round_to_power_of_two(C)
+        A = A*sps.diags(C) if sps.issparse(A) else A*C
+        c = c*C
+
+    b_scale = np.max(np.abs(b)) if b.size > 0 else 1
+    if b_scale == 0:
+        b_scale = 1.
+    b = b/b_scale
+
+    if x0 is not None:
+        x0 = x0/b_scale*(1/C)
+    return A, b, c, x0, C, b_scale
+
+
+def _unscale(x, C, b_scale):
+    """
+    Converts solution to _autoscale problem -> solution to original problem.
+    """
+
+    try:
+        n = len(C)
+        # fails if sparse or scalar; that's OK.
+        # this is only needed for original simplex (never sparse)
+    except TypeError:
+        n = len(x)
+
+    return x[:n]*b_scale*C
+
+
+def _display_summary(message, status, fun, iteration):
+    """
+    Print the termination summary of the linear program
+
+    Parameters
+    ----------
+    message : str
+            A string descriptor of the exit status of the optimization.
+    status : int
+        An integer representing the exit status of the optimization::
+
+                0 : Optimization terminated successfully
+                1 : Iteration limit reached
+                2 : Problem appears to be infeasible
+                3 : Problem appears to be unbounded
+                4 : Serious numerical difficulties encountered
+
+    fun : float
+        Value of the objective function.
+    iteration : iteration
+        The number of iterations performed.
+    """
+    print(message)
+    if status in (0, 1):
+        print(f"         Current function value: {fun: <12.6f}")
+    print(f"         Iterations: {iteration:d}")
+
+
+def _postsolve(x, postsolve_args, complete=False):
+    """
+    Given solution x to presolved, standard form linear program x, add
+    fixed variables back into the problem and undo the variable substitutions
+    to get solution to original linear program. Also, calculate the objective
+    function value, slack in original upper bound constraints, and residuals
+    in original equality constraints.
+
+    Parameters
+    ----------
+    x : 1-D array
+        Solution vector to the standard-form problem.
+    postsolve_args : tuple
+        Data needed by _postsolve to convert the solution to the standard-form
+        problem into the solution to the original problem, including:
+
+    lp : A `scipy.optimize._linprog_util._LPProblem` consisting of the following fields:
+
+        c : 1D array
+            The coefficients of the linear objective function to be minimized.
+        A_ub : 2D array, optional
+            The inequality constraint matrix. Each row of ``A_ub`` specifies the
+            coefficients of a linear inequality constraint on ``x``.
+        b_ub : 1D array, optional
+            The inequality constraint vector. Each element represents an
+            upper bound on the corresponding value of ``A_ub @ x``.
+        A_eq : 2D array, optional
+            The equality constraint matrix. Each row of ``A_eq`` specifies the
+            coefficients of a linear equality constraint on ``x``.
+        b_eq : 1D array, optional
+            The equality constraint vector. Each element of ``A_eq @ x`` must equal
+            the corresponding element of ``b_eq``.
+        bounds : 2D array
+            The bounds of ``x``, lower bounds in the 1st column, upper
+            bounds in the 2nd column. The bounds are possibly tightened
+            by the presolve procedure.
+        x0 : 1D array, optional
+            Guess values of the decision variables, which will be refined by
+            the optimization algorithm. This argument is currently used only by the
+            'revised simplex' method, and can only be used if `x0` represents a
+            basic feasible solution.
+
+    revstack: list of functions
+        the functions in the list reverse the operations of _presolve()
+        the function signature is x_org = f(x_mod), where x_mod is the result
+        of a presolve step and x_org the value at the start of the step
+    complete : bool
+        Whether the solution is was determined in presolve (``True`` if so)
+
+    Returns
+    -------
+    x : 1-D array
+        Solution vector to original linear programming problem
+    fun: float
+        optimal objective value for original problem
+    slack : 1-D array
+        The (non-negative) slack in the upper bound constraints, that is,
+        ``b_ub - A_ub @ x``
+    con : 1-D array
+        The (nominally zero) residuals of the equality constraints, that is,
+        ``b - A_eq @ x``
+    """
+    # note that all the inputs are the ORIGINAL, unmodified versions
+    # no rows, columns have been removed
+
+    c, A_ub, b_ub, A_eq, b_eq, bounds, x0, integrality = postsolve_args[0]
+    revstack, C, b_scale = postsolve_args[1:]
+
+    x = _unscale(x, C, b_scale)
+
+    # Undo variable substitutions of _get_Abc()
+    # if "complete", problem was solved in presolve; don't do anything here
+    n_x = bounds.shape[0]
+    if not complete and bounds is not None:  # bounds are never none, probably
+        n_unbounded = 0
+        for i, bi in enumerate(bounds):
+            lbi = bi[0]
+            ubi = bi[1]
+            if lbi == -np.inf and ubi == np.inf:
+                n_unbounded += 1
+                x[i] = x[i] - x[n_x + n_unbounded - 1]
+            else:
+                if lbi == -np.inf:
+                    x[i] = ubi - x[i]
+                else:
+                    x[i] += lbi
+    # all the rest of the variables were artificial
+    x = x[:n_x]
+
+    # If there were variables removed from the problem, add them back into the
+    # solution vector
+    # Apply the functions in revstack (reverse direction)
+    for rev in reversed(revstack):
+        x = rev(x)
+
+    fun = x.dot(c)
+    slack = b_ub - A_ub.dot(x)  # report slack for ORIGINAL UB constraints
+    # report residuals of ORIGINAL EQ constraints
+    con = b_eq - A_eq.dot(x)
+
+    return x, fun, slack, con
+
+
+def _check_result(x, fun, status, slack, con, bounds, tol, message,
+                  integrality):
+    """
+    Check the validity of the provided solution.
+
+    A valid (optimal) solution satisfies all bounds, all slack variables are
+    negative and all equality constraint residuals are strictly non-zero.
+    Further, the lower-bounds, upper-bounds, slack and residuals contain
+    no nan values.
+
+    Parameters
+    ----------
+    x : 1-D array
+        Solution vector to original linear programming problem
+    fun: float
+        optimal objective value for original problem
+    status : int
+        An integer representing the exit status of the optimization::
+
+             0 : Optimization terminated successfully
+             1 : Iteration limit reached
+             2 : Problem appears to be infeasible
+             3 : Problem appears to be unbounded
+             4 : Serious numerical difficulties encountered
+
+    slack : 1-D array
+        The (non-negative) slack in the upper bound constraints, that is,
+        ``b_ub - A_ub @ x``
+    con : 1-D array
+        The (nominally zero) residuals of the equality constraints, that is,
+        ``b - A_eq @ x``
+    bounds : 2D array
+        The bounds on the original variables ``x``
+    message : str
+        A string descriptor of the exit status of the optimization.
+    tol : float
+        Termination tolerance; see [1]_ Section 4.5.
+
+    Returns
+    -------
+    status : int
+        An integer representing the exit status of the optimization::
+
+             0 : Optimization terminated successfully
+             1 : Iteration limit reached
+             2 : Problem appears to be infeasible
+             3 : Problem appears to be unbounded
+             4 : Serious numerical difficulties encountered
+
+    message : str
+        A string descriptor of the exit status of the optimization.
+    """
+    # Somewhat arbitrary
+    tol = np.sqrt(tol) * 10
+
+    if x is None:
+        # HiGHS does not provide x if infeasible/unbounded
+        if status == 0:  # Observed with HiGHS Simplex Primal
+            status = 4
+            message = ("The solver did not provide a solution nor did it "
+                       "report a failure. Please submit a bug report.")
+        return status, message
+
+    contains_nans = (
+        np.isnan(x).any()
+        or np.isnan(fun)
+        or np.isnan(slack).any()
+        or np.isnan(con).any()
+    )
+
+    if contains_nans:
+        is_feasible = False
+    else:
+        if integrality is None:
+            integrality = 0
+        valid_bounds = (x >= bounds[:, 0] - tol) & (x <= bounds[:, 1] + tol)
+        # When integrality is 2 or 3, x must be within bounds OR take value 0
+        valid_bounds |= (integrality > 1) & np.isclose(x, 0, atol=tol)
+        invalid_bounds = not np.all(valid_bounds)
+
+        invalid_slack = status != 3 and (slack < -tol).any()
+        invalid_con = status != 3 and (np.abs(con) > tol).any()
+        is_feasible = not (invalid_bounds or invalid_slack or invalid_con)
+
+    if status == 0 and not is_feasible:
+        status = 4
+        message = ("The solution does not satisfy the constraints within the "
+                   "required tolerance of " + f"{tol:.2E}" + ", yet "
+                   "no errors were raised and there is no certificate of "
+                   "infeasibility or unboundedness. Check whether "
+                   "the slack and constraint residuals are acceptable; "
+                   "if not, consider enabling presolve, adjusting the "
+                   "tolerance option(s), and/or using a different method. "
+                   "Please consider submitting a bug report.")
+    elif status == 2 and is_feasible:
+        # Occurs if the simplex method exits after phase one with a very
+        # nearly basic feasible solution. Postsolving can make the solution
+        # basic, however, this solution is NOT optimal
+        status = 4
+        message = ("The solution is feasible, but the solver did not report "
+                   "that the solution was optimal. Please try a different "
+                   "method.")
+
+    return status, message

env-llmeval/lib/python3.10/site-packages/scipy/optimize/_lsq/__init__.py

@@ -0,0 +1,5 @@
+"""This module contains least-squares algorithms."""
+from .least_squares import least_squares
+from .lsq_linear import lsq_linear
+
+__all__ = ['least_squares', 'lsq_linear']

env-llmeval/lib/python3.10/site-packages/scipy/optimize/_lsq/trf.py

@@ -0,0 +1,560 @@
+"""Trust Region Reflective algorithm for least-squares optimization.
+
+The algorithm is based on ideas from paper [STIR]_. The main idea is to
+account for the presence of the bounds by appropriate scaling of the variables (or,
+equivalently, changing a trust-region shape). Let's introduce a vector v:
+
+           | ub[i] - x[i], if g[i] < 0 and ub[i] < np.inf
+    v[i] = | x[i] - lb[i], if g[i] > 0 and lb[i] > -np.inf
+           | 1,           otherwise
+
+where g is the gradient of a cost function and lb, ub are the bounds. Its
+components are distances to the bounds at which the anti-gradient points (if
+this distance is finite). Define a scaling matrix D = diag(v**0.5).
+First-order optimality conditions can be stated as
+
+    D^2 g(x) = 0.
+
+Meaning that components of the gradient should be zero for strictly interior
+variables, and components must point inside the feasible region for variables
+on the bound.
+
+Now consider this system of equations as a new optimization problem. If the
+point x is strictly interior (not on the bound), then the left-hand side is
+differentiable and the Newton step for it satisfies
+
+    (D^2 H + diag(g) Jv) p = -D^2 g
+
+where H is the Hessian matrix (or its J^T J approximation in least squares),
+Jv is the Jacobian matrix of v with components -1, 1 or 0, such that all
+elements of matrix C = diag(g) Jv are non-negative. Introduce the change
+of the variables x = D x_h (_h would be "hat" in LaTeX). In the new variables,
+we have a Newton step satisfying
+
+    B_h p_h = -g_h,
+
+where B_h = D H D + C, g_h = D g. In least squares B_h = J_h^T J_h, where
+J_h = J D. Note that J_h and g_h are proper Jacobian and gradient with respect
+to "hat" variables. To guarantee global convergence we formulate a
+trust-region problem based on the Newton step in the new variables:
+
+    0.5 * p_h^T B_h p + g_h^T p_h -> min, ||p_h|| <= Delta
+
+In the original space B = H + D^{-1} C D^{-1}, and the equivalent trust-region
+problem is
+
+    0.5 * p^T B p + g^T p -> min, ||D^{-1} p|| <= Delta
+
+Here, the meaning of the matrix D becomes more clear: it alters the shape
+of a trust-region, such that large steps towards the bounds are not allowed.
+In the implementation, the trust-region problem is solved in "hat" space,
+but handling of the bounds is done in the original space (see below and read
+the code).
+
+The introduction of the matrix D doesn't allow to ignore bounds, the algorithm
+must keep iterates strictly feasible (to satisfy aforementioned
+differentiability), the parameter theta controls step back from the boundary
+(see the code for details).
+
+The algorithm does another important trick. If the trust-region solution
+doesn't fit into the bounds, then a reflected (from a firstly encountered
+bound) search direction is considered. For motivation and analysis refer to
+[STIR]_ paper (and other papers of the authors). In practice, it doesn't need
+a lot of justifications, the algorithm simply chooses the best step among
+three: a constrained trust-region step, a reflected step and a constrained
+Cauchy step (a minimizer along -g_h in "hat" space, or -D^2 g in the original
+space).
+
+Another feature is that a trust-region radius control strategy is modified to
+account for appearance of the diagonal C matrix (called diag_h in the code).
+
+Note that all described peculiarities are completely gone as we consider
+problems without bounds (the algorithm becomes a standard trust-region type
+algorithm very similar to ones implemented in MINPACK).
+
+The implementation supports two methods of solving the trust-region problem.
+The first, called 'exact', applies SVD on Jacobian and then solves the problem
+very accurately using the algorithm described in [JJMore]_. It is not
+applicable to large problem. The second, called 'lsmr', uses the 2-D subspace
+approach (sometimes called "indefinite dogleg"), where the problem is solved
+in a subspace spanned by the gradient and the approximate Gauss-Newton step
+found by ``scipy.sparse.linalg.lsmr``. A 2-D trust-region problem is
+reformulated as a 4th order algebraic equation and solved very accurately by
+``numpy.roots``. The subspace approach allows to solve very large problems
+(up to couple of millions of residuals on a regular PC), provided the Jacobian
+matrix is sufficiently sparse.
+
+References
+----------
+.. [STIR] Branch, M.A., T.F. Coleman, and Y. Li, "A Subspace, Interior,
+      and Conjugate Gradient Method for Large-Scale Bound-Constrained
+      Minimization Problems," SIAM Journal on Scientific Computing,
+      Vol. 21, Number 1, pp 1-23, 1999.
+.. [JJMore] More, J. J., "The Levenberg-Marquardt Algorithm: Implementation
+    and Theory," Numerical Analysis, ed. G. A. Watson, Lecture
+"""
+import numpy as np
+from numpy.linalg import norm
+from scipy.linalg import svd, qr
+from scipy.sparse.linalg import lsmr
+from scipy.optimize import OptimizeResult
+
+from .common import (
+    step_size_to_bound, find_active_constraints, in_bounds,
+    make_strictly_feasible, intersect_trust_region, solve_lsq_trust_region,
+    solve_trust_region_2d, minimize_quadratic_1d, build_quadratic_1d,
+    evaluate_quadratic, right_multiplied_operator, regularized_lsq_operator,
+    CL_scaling_vector, compute_grad, compute_jac_scale, check_termination,
+    update_tr_radius, scale_for_robust_loss_function, print_header_nonlinear,
+    print_iteration_nonlinear)
+
+
+def trf(fun, jac, x0, f0, J0, lb, ub, ftol, xtol, gtol, max_nfev, x_scale,
+        loss_function, tr_solver, tr_options, verbose):
+    # For efficiency, it makes sense to run the simplified version of the
+    # algorithm when no bounds are imposed. We decided to write the two
+    # separate functions. It violates the DRY principle, but the individual
+    # functions are kept the most readable.
+    if np.all(lb == -np.inf) and np.all(ub == np.inf):
+        return trf_no_bounds(
+            fun, jac, x0, f0, J0, ftol, xtol, gtol, max_nfev, x_scale,
+            loss_function, tr_solver, tr_options, verbose)
+    else:
+        return trf_bounds(
+            fun, jac, x0, f0, J0, lb, ub, ftol, xtol, gtol, max_nfev, x_scale,
+            loss_function, tr_solver, tr_options, verbose)
+
+
+def select_step(x, J_h, diag_h, g_h, p, p_h, d, Delta, lb, ub, theta):
+    """Select the best step according to Trust Region Reflective algorithm."""
+    if in_bounds(x + p, lb, ub):
+        p_value = evaluate_quadratic(J_h, g_h, p_h, diag=diag_h)
+        return p, p_h, -p_value
+
+    p_stride, hits = step_size_to_bound(x, p, lb, ub)
+
+    # Compute the reflected direction.
+    r_h = np.copy(p_h)
+    r_h[hits.astype(bool)] *= -1
+    r = d * r_h
+
+    # Restrict trust-region step, such that it hits the bound.
+    p *= p_stride
+    p_h *= p_stride
+    x_on_bound = x + p
+
+    # Reflected direction will cross first either feasible region or trust
+    # region boundary.
+    _, to_tr = intersect_trust_region(p_h, r_h, Delta)
+    to_bound, _ = step_size_to_bound(x_on_bound, r, lb, ub)
+
+    # Find lower and upper bounds on a step size along the reflected
+    # direction, considering the strict feasibility requirement. There is no
+    # single correct way to do that, the chosen approach seems to work best
+    # on test problems.
+    r_stride = min(to_bound, to_tr)
+    if r_stride > 0:
+        r_stride_l = (1 - theta) * p_stride / r_stride
+        if r_stride == to_bound:
+            r_stride_u = theta * to_bound
+        else:
+            r_stride_u = to_tr
+    else:
+        r_stride_l = 0
+        r_stride_u = -1
+
+    # Check if reflection step is available.
+    if r_stride_l <= r_stride_u:
+        a, b, c = build_quadratic_1d(J_h, g_h, r_h, s0=p_h, diag=diag_h)
+        r_stride, r_value = minimize_quadratic_1d(
+            a, b, r_stride_l, r_stride_u, c=c)
+        r_h *= r_stride
+        r_h += p_h
+        r = r_h * d
+    else:
+        r_value = np.inf
+
+    # Now correct p_h to make it strictly interior.
+    p *= theta
+    p_h *= theta
+    p_value = evaluate_quadratic(J_h, g_h, p_h, diag=diag_h)
+
+    ag_h = -g_h
+    ag = d * ag_h
+
+    to_tr = Delta / norm(ag_h)
+    to_bound, _ = step_size_to_bound(x, ag, lb, ub)
+    if to_bound < to_tr:
+        ag_stride = theta * to_bound
+    else:
+        ag_stride = to_tr
+
+    a, b = build_quadratic_1d(J_h, g_h, ag_h, diag=diag_h)
+    ag_stride, ag_value = minimize_quadratic_1d(a, b, 0, ag_stride)
+    ag_h *= ag_stride
+    ag *= ag_stride
+
+    if p_value < r_value and p_value < ag_value:
+        return p, p_h, -p_value
+    elif r_value < p_value and r_value < ag_value:
+        return r, r_h, -r_value
+    else:
+        return ag, ag_h, -ag_value
+
+
+def trf_bounds(fun, jac, x0, f0, J0, lb, ub, ftol, xtol, gtol, max_nfev,
+               x_scale, loss_function, tr_solver, tr_options, verbose):
+    x = x0.copy()
+
+    f = f0
+    f_true = f.copy()
+    nfev = 1
+
+    J = J0
+    njev = 1
+    m, n = J.shape
+
+    if loss_function is not None:
+        rho = loss_function(f)
+        cost = 0.5 * np.sum(rho[0])
+        J, f = scale_for_robust_loss_function(J, f, rho)
+    else:
+        cost = 0.5 * np.dot(f, f)
+
+    g = compute_grad(J, f)
+
+    jac_scale = isinstance(x_scale, str) and x_scale == 'jac'
+    if jac_scale:
+        scale, scale_inv = compute_jac_scale(J)
+    else:
+        scale, scale_inv = x_scale, 1 / x_scale
+
+    v, dv = CL_scaling_vector(x, g, lb, ub)
+    v[dv != 0] *= scale_inv[dv != 0]
+    Delta = norm(x0 * scale_inv / v**0.5)
+    if Delta == 0:
+        Delta = 1.0
+
+    g_norm = norm(g * v, ord=np.inf)
+
+    f_augmented = np.zeros(m + n)
+    if tr_solver == 'exact':
+        J_augmented = np.empty((m + n, n))
+    elif tr_solver == 'lsmr':
+        reg_term = 0.0
+        regularize = tr_options.pop('regularize', True)
+
+    if max_nfev is None:
+        max_nfev = x0.size * 100
+
+    alpha = 0.0  # "Levenberg-Marquardt" parameter
+
+    termination_status = None
+    iteration = 0
+    step_norm = None
+    actual_reduction = None
+
+    if verbose == 2:
+        print_header_nonlinear()
+
+    while True:
+        v, dv = CL_scaling_vector(x, g, lb, ub)
+
+        g_norm = norm(g * v, ord=np.inf)
+        if g_norm < gtol:
+            termination_status = 1
+
+        if verbose == 2:
+            print_iteration_nonlinear(iteration, nfev, cost, actual_reduction,
+                                      step_norm, g_norm)
+
+        if termination_status is not None or nfev == max_nfev:
+            break
+
+        # Now compute variables in "hat" space. Here, we also account for
+        # scaling introduced by `x_scale` parameter. This part is a bit tricky,
+        # you have to write down the formulas and see how the trust-region
+        # problem is formulated when the two types of scaling are applied.
+        # The idea is that first we apply `x_scale` and then apply Coleman-Li
+        # approach in the new variables.
+
+        # v is recomputed in the variables after applying `x_scale`, note that
+        # components which were identically 1 not affected.
+        v[dv != 0] *= scale_inv[dv != 0]
+
+        # Here, we apply two types of scaling.
+        d = v**0.5 * scale
+
+        # C = diag(g * scale) Jv
+        diag_h = g * dv * scale
+
+        # After all this has been done, we continue normally.
+
+        # "hat" gradient.
+        g_h = d * g
+
+        f_augmented[:m] = f
+        if tr_solver == 'exact':
+            J_augmented[:m] = J * d
+            J_h = J_augmented[:m]  # Memory view.
+            J_augmented[m:] = np.diag(diag_h**0.5)
+            U, s, V = svd(J_augmented, full_matrices=False)
+            V = V.T
+            uf = U.T.dot(f_augmented)
+        elif tr_solver == 'lsmr':
+            J_h = right_multiplied_operator(J, d)
+
+            if regularize:
+                a, b = build_quadratic_1d(J_h, g_h, -g_h, diag=diag_h)
+                to_tr = Delta / norm(g_h)
+                ag_value = minimize_quadratic_1d(a, b, 0, to_tr)[1]
+                reg_term = -ag_value / Delta**2
+
+            lsmr_op = regularized_lsq_operator(J_h, (diag_h + reg_term)**0.5)
+            gn_h = lsmr(lsmr_op, f_augmented, **tr_options)[0]
+            S = np.vstack((g_h, gn_h)).T
+            S, _ = qr(S, mode='economic')
+            JS = J_h.dot(S)  # LinearOperator does dot too.
+            B_S = np.dot(JS.T, JS) + np.dot(S.T * diag_h, S)
+            g_S = S.T.dot(g_h)
+
+        # theta controls step back step ratio from the bounds.
+        theta = max(0.995, 1 - g_norm)
+
+        actual_reduction = -1
+        while actual_reduction <= 0 and nfev < max_nfev:
+            if tr_solver == 'exact':
+                p_h, alpha, n_iter = solve_lsq_trust_region(
+                    n, m, uf, s, V, Delta, initial_alpha=alpha)
+            elif tr_solver == 'lsmr':
+                p_S, _ = solve_trust_region_2d(B_S, g_S, Delta)
+                p_h = S.dot(p_S)
+
+            p = d * p_h  # Trust-region solution in the original space.
+            step, step_h, predicted_reduction = select_step(
+                x, J_h, diag_h, g_h, p, p_h, d, Delta, lb, ub, theta)
+
+            x_new = make_strictly_feasible(x + step, lb, ub, rstep=0)
+            f_new = fun(x_new)
+            nfev += 1
+
+            step_h_norm = norm(step_h)
+
+            if not np.all(np.isfinite(f_new)):
+                Delta = 0.25 * step_h_norm
+                continue
+
+            # Usual trust-region step quality estimation.
+            if loss_function is not None:
+                cost_new = loss_function(f_new, cost_only=True)
+            else:
+                cost_new = 0.5 * np.dot(f_new, f_new)
+            actual_reduction = cost - cost_new
+            Delta_new, ratio = update_tr_radius(
+                Delta, actual_reduction, predicted_reduction,
+                step_h_norm, step_h_norm > 0.95 * Delta)
+
+            step_norm = norm(step)
+            termination_status = check_termination(
+                actual_reduction, cost, step_norm, norm(x), ratio, ftol, xtol)
+            if termination_status is not None:
+                break
+
+            alpha *= Delta / Delta_new
+            Delta = Delta_new
+
+        if actual_reduction > 0:
+            x = x_new
+
+            f = f_new
+            f_true = f.copy()
+
+            cost = cost_new
+
+            J = jac(x, f)
+            njev += 1
+
+            if loss_function is not None:
+                rho = loss_function(f)
+                J, f = scale_for_robust_loss_function(J, f, rho)
+
+            g = compute_grad(J, f)
+
+            if jac_scale:
+                scale, scale_inv = compute_jac_scale(J, scale_inv)
+        else:
+            step_norm = 0
+            actual_reduction = 0
+
+        iteration += 1
+
+    if termination_status is None:
+        termination_status = 0
+
+    active_mask = find_active_constraints(x, lb, ub, rtol=xtol)
+    return OptimizeResult(
+        x=x, cost=cost, fun=f_true, jac=J, grad=g, optimality=g_norm,
+        active_mask=active_mask, nfev=nfev, njev=njev,
+        status=termination_status)
+
+
+def trf_no_bounds(fun, jac, x0, f0, J0, ftol, xtol, gtol, max_nfev,
+                  x_scale, loss_function, tr_solver, tr_options, verbose):
+    x = x0.copy()
+
+    f = f0
+    f_true = f.copy()
+    nfev = 1
+
+    J = J0
+    njev = 1
+    m, n = J.shape
+
+    if loss_function is not None:
+        rho = loss_function(f)
+        cost = 0.5 * np.sum(rho[0])
+        J, f = scale_for_robust_loss_function(J, f, rho)
+    else:
+        cost = 0.5 * np.dot(f, f)
+
+    g = compute_grad(J, f)
+
+    jac_scale = isinstance(x_scale, str) and x_scale == 'jac'
+    if jac_scale:
+        scale, scale_inv = compute_jac_scale(J)
+    else:
+        scale, scale_inv = x_scale, 1 / x_scale
+
+    Delta = norm(x0 * scale_inv)
+    if Delta == 0:
+        Delta = 1.0
+
+    if tr_solver == 'lsmr':
+        reg_term = 0
+        damp = tr_options.pop('damp', 0.0)
+        regularize = tr_options.pop('regularize', True)
+
+    if max_nfev is None:
+        max_nfev = x0.size * 100
+
+    alpha = 0.0  # "Levenberg-Marquardt" parameter
+
+    termination_status = None
+    iteration = 0
+    step_norm = None
+    actual_reduction = None
+
+    if verbose == 2:
+        print_header_nonlinear()
+
+    while True:
+        g_norm = norm(g, ord=np.inf)
+        if g_norm < gtol:
+            termination_status = 1
+
+        if verbose == 2:
+            print_iteration_nonlinear(iteration, nfev, cost, actual_reduction,
+                                      step_norm, g_norm)
+
+        if termination_status is not None or nfev == max_nfev:
+            break
+
+        d = scale
+        g_h = d * g
+
+        if tr_solver == 'exact':
+            J_h = J * d
+            U, s, V = svd(J_h, full_matrices=False)
+            V = V.T
+            uf = U.T.dot(f)
+        elif tr_solver == 'lsmr':
+            J_h = right_multiplied_operator(J, d)
+
+            if regularize:
+                a, b = build_quadratic_1d(J_h, g_h, -g_h)
+                to_tr = Delta / norm(g_h)
+                ag_value = minimize_quadratic_1d(a, b, 0, to_tr)[1]
+                reg_term = -ag_value / Delta**2
+
+            damp_full = (damp**2 + reg_term)**0.5
+            gn_h = lsmr(J_h, f, damp=damp_full, **tr_options)[0]
+            S = np.vstack((g_h, gn_h)).T
+            S, _ = qr(S, mode='economic')
+            JS = J_h.dot(S)
+            B_S = np.dot(JS.T, JS)
+            g_S = S.T.dot(g_h)
+
+        actual_reduction = -1
+        while actual_reduction <= 0 and nfev < max_nfev:
+            if tr_solver == 'exact':
+                step_h, alpha, n_iter = solve_lsq_trust_region(
+                    n, m, uf, s, V, Delta, initial_alpha=alpha)
+            elif tr_solver == 'lsmr':
+                p_S, _ = solve_trust_region_2d(B_S, g_S, Delta)
+                step_h = S.dot(p_S)
+
+            predicted_reduction = -evaluate_quadratic(J_h, g_h, step_h)
+            step = d * step_h
+            x_new = x + step
+            f_new = fun(x_new)
+            nfev += 1
+
+            step_h_norm = norm(step_h)
+
+            if not np.all(np.isfinite(f_new)):
+                Delta = 0.25 * step_h_norm
+                continue
+
+            # Usual trust-region step quality estimation.
+            if loss_function is not None:
+                cost_new = loss_function(f_new, cost_only=True)
+            else:
+                cost_new = 0.5 * np.dot(f_new, f_new)
+            actual_reduction = cost - cost_new
+
+            Delta_new, ratio = update_tr_radius(
+                Delta, actual_reduction, predicted_reduction,
+                step_h_norm, step_h_norm > 0.95 * Delta)
+
+            step_norm = norm(step)
+            termination_status = check_termination(
+                actual_reduction, cost, step_norm, norm(x), ratio, ftol, xtol)
+            if termination_status is not None:
+                break
+
+            alpha *= Delta / Delta_new
+            Delta = Delta_new
+
+        if actual_reduction > 0:
+            x = x_new
+
+            f = f_new
+            f_true = f.copy()
+
+            cost = cost_new
+
+            J = jac(x, f)
+            njev += 1
+
+            if loss_function is not None:
+                rho = loss_function(f)
+                J, f = scale_for_robust_loss_function(J, f, rho)
+
+            g = compute_grad(J, f)
+
+            if jac_scale:
+                scale, scale_inv = compute_jac_scale(J, scale_inv)
+        else:
+            step_norm = 0
+            actual_reduction = 0
+
+        iteration += 1
+
+    if termination_status is None:
+        termination_status = 0
+
+    active_mask = np.zeros_like(x)
+    return OptimizeResult(
+        x=x, cost=cost, fun=f_true, jac=J, grad=g, optimality=g_norm,
+        active_mask=active_mask, nfev=nfev, njev=njev,
+        status=termination_status)

env-llmeval/lib/python3.10/site-packages/scipy/optimize/_milp.py

@@ -0,0 +1,392 @@
+import warnings
+import numpy as np
+from scipy.sparse import csc_array, vstack, issparse
+from scipy._lib._util import VisibleDeprecationWarning
+from ._highs._highs_wrapper import _highs_wrapper  # type: ignore[import]
+from ._constraints import LinearConstraint, Bounds
+from ._optimize import OptimizeResult
+from ._linprog_highs import _highs_to_scipy_status_message
+
+
+def _constraints_to_components(constraints):
+    """
+    Convert sequence of constraints to a single set of components A, b_l, b_u.
+
+    `constraints` could be
+
+    1. A LinearConstraint
+    2. A tuple representing a LinearConstraint
+    3. An invalid object
+    4. A sequence of composed entirely of objects of type 1/2
+    5. A sequence containing at least one object of type 3
+
+    We want to accept 1, 2, and 4 and reject 3 and 5.
+    """
+    message = ("`constraints` (or each element within `constraints`) must be "
+               "convertible into an instance of "
+               "`scipy.optimize.LinearConstraint`.")
+    As = []
+    b_ls = []
+    b_us = []
+
+    # Accept case 1 by standardizing as case 4
+    if isinstance(constraints, LinearConstraint):
+        constraints = [constraints]
+    else:
+        # Reject case 3
+        try:
+            iter(constraints)
+        except TypeError as exc:
+            raise ValueError(message) from exc
+
+        # Accept case 2 by standardizing as case 4
+        if len(constraints) == 3:
+            # argument could be a single tuple representing a LinearConstraint
+            try:
+                constraints = [LinearConstraint(*constraints)]
+            except (TypeError, ValueError, VisibleDeprecationWarning):
+                # argument was not a tuple representing a LinearConstraint
+                pass
+
+    # Address cases 4/5
+    for constraint in constraints:
+        # if it's not a LinearConstraint or something that represents a
+        # LinearConstraint at this point, it's invalid
+        if not isinstance(constraint, LinearConstraint):
+            try:
+                constraint = LinearConstraint(*constraint)
+            except TypeError as exc:
+                raise ValueError(message) from exc
+        As.append(csc_array(constraint.A))
+        b_ls.append(np.atleast_1d(constraint.lb).astype(np.float64))
+        b_us.append(np.atleast_1d(constraint.ub).astype(np.float64))
+
+    if len(As) > 1:
+        A = vstack(As, format="csc")
+        b_l = np.concatenate(b_ls)
+        b_u = np.concatenate(b_us)
+    else:  # avoid unnecessary copying
+        A = As[0]
+        b_l = b_ls[0]
+        b_u = b_us[0]
+
+    return A, b_l, b_u
+
+
+def _milp_iv(c, integrality, bounds, constraints, options):
+    # objective IV
+    if issparse(c):
+        raise ValueError("`c` must be a dense array.")
+    c = np.atleast_1d(c).astype(np.float64)
+    if c.ndim != 1 or c.size == 0 or not np.all(np.isfinite(c)):
+        message = ("`c` must be a one-dimensional array of finite numbers "
+                   "with at least one element.")
+        raise ValueError(message)
+
+    # integrality IV
+    if issparse(integrality):
+        raise ValueError("`integrality` must be a dense array.")
+    message = ("`integrality` must contain integers 0-3 and be broadcastable "
+               "to `c.shape`.")
+    if integrality is None:
+        integrality = 0
+    try:
+        integrality = np.broadcast_to(integrality, c.shape).astype(np.uint8)
+    except ValueError:
+        raise ValueError(message)
+    if integrality.min() < 0 or integrality.max() > 3:
+        raise ValueError(message)
+
+    # bounds IV
+    if bounds is None:
+        bounds = Bounds(0, np.inf)
+    elif not isinstance(bounds, Bounds):
+        message = ("`bounds` must be convertible into an instance of "
+                   "`scipy.optimize.Bounds`.")
+        try:
+            bounds = Bounds(*bounds)
+        except TypeError as exc:
+            raise ValueError(message) from exc
+
+    try:
+        lb = np.broadcast_to(bounds.lb, c.shape).astype(np.float64)
+        ub = np.broadcast_to(bounds.ub, c.shape).astype(np.float64)
+    except (ValueError, TypeError) as exc:
+        message = ("`bounds.lb` and `bounds.ub` must contain reals and "
+                   "be broadcastable to `c.shape`.")
+        raise ValueError(message) from exc
+
+    # constraints IV
+    if not constraints:
+        constraints = [LinearConstraint(np.empty((0, c.size)),
+                                        np.empty((0,)), np.empty((0,)))]
+    try:
+        A, b_l, b_u = _constraints_to_components(constraints)
+    except ValueError as exc:
+        message = ("`constraints` (or each element within `constraints`) must "
+                   "be convertible into an instance of "
+                   "`scipy.optimize.LinearConstraint`.")
+        raise ValueError(message) from exc
+
+    if A.shape != (b_l.size, c.size):
+        message = "The shape of `A` must be (len(b_l), len(c))."
+        raise ValueError(message)
+    indptr, indices, data = A.indptr, A.indices, A.data.astype(np.float64)
+
+    # options IV
+    options = options or {}
+    supported_options = {'disp', 'presolve', 'time_limit', 'node_limit',
+                         'mip_rel_gap'}
+    unsupported_options = set(options).difference(supported_options)
+    if unsupported_options:
+        message = (f"Unrecognized options detected: {unsupported_options}. "
+                   "These will be passed to HiGHS verbatim.")
+        warnings.warn(message, RuntimeWarning, stacklevel=3)
+    options_iv = {'log_to_console': options.pop("disp", False),
+                  'mip_max_nodes': options.pop("node_limit", None)}
+    options_iv.update(options)
+
+    return c, integrality, lb, ub, indptr, indices, data, b_l, b_u, options_iv
+
+
+def milp(c, *, integrality=None, bounds=None, constraints=None, options=None):
+    r"""
+    Mixed-integer linear programming
+
+    Solves problems of the following form:
+
+    .. math::
+
+        \min_x \ & c^T x \\
+        \mbox{such that} \ & b_l \leq A x \leq b_u,\\
+        & l \leq x \leq u, \\
+        & x_i \in \mathbb{Z}, i \in X_i
+
+    where :math:`x` is a vector of decision variables;
+    :math:`c`, :math:`b_l`, :math:`b_u`, :math:`l`, and :math:`u` are vectors;
+    :math:`A` is a matrix, and :math:`X_i` is the set of indices of
+    decision variables that must be integral. (In this context, a
+    variable that can assume only integer values is said to be "integral";
+    it has an "integrality" constraint.)
+
+    Alternatively, that's:
+
+    minimize::
+
+        c @ x
+
+    such that::
+
+        b_l <= A @ x <= b_u
+        l <= x <= u
+        Specified elements of x must be integers
+
+    By default, ``l = 0`` and ``u = np.inf`` unless specified with
+    ``bounds``.
+
+    Parameters
+    ----------
+    c : 1D dense array_like
+        The coefficients of the linear objective function to be minimized.
+        `c` is converted to a double precision array before the problem is
+        solved.
+    integrality : 1D dense array_like, optional
+        Indicates the type of integrality constraint on each decision variable.
+
+        ``0`` : Continuous variable; no integrality constraint.
+
+        ``1`` : Integer variable; decision variable must be an integer
+        within `bounds`.
+
+        ``2`` : Semi-continuous variable; decision variable must be within
+        `bounds` or take value ``0``.
+
+        ``3`` : Semi-integer variable; decision variable must be an integer
+        within `bounds` or take value ``0``.
+
+        By default, all variables are continuous. `integrality` is converted
+        to an array of integers before the problem is solved.
+
+    bounds : scipy.optimize.Bounds, optional
+        Bounds on the decision variables. Lower and upper bounds are converted
+        to double precision arrays before the problem is solved. The
+        ``keep_feasible`` parameter of the `Bounds` object is ignored. If
+        not specified, all decision variables are constrained to be
+        non-negative.
+    constraints : sequence of scipy.optimize.LinearConstraint, optional
+        Linear constraints of the optimization problem. Arguments may be
+        one of the following:
+
+        1. A single `LinearConstraint` object
+        2. A single tuple that can be converted to a `LinearConstraint` object
+           as ``LinearConstraint(*constraints)``
+        3. A sequence composed entirely of objects of type 1. and 2.
+
+        Before the problem is solved, all values are converted to double
+        precision, and the matrices of constraint coefficients are converted to
+        instances of `scipy.sparse.csc_array`. The ``keep_feasible`` parameter
+        of `LinearConstraint` objects is ignored.
+    options : dict, optional
+        A dictionary of solver options. The following keys are recognized.
+
+        disp : bool (default: ``False``)
+            Set to ``True`` if indicators of optimization status are to be
+            printed to the console during optimization.
+        node_limit : int, optional
+            The maximum number of nodes (linear program relaxations) to solve
+            before stopping. Default is no maximum number of nodes.
+        presolve : bool (default: ``True``)
+            Presolve attempts to identify trivial infeasibilities,
+            identify trivial unboundedness, and simplify the problem before
+            sending it to the main solver.
+        time_limit : float, optional
+            The maximum number of seconds allotted to solve the problem.
+            Default is no time limit.
+        mip_rel_gap : float, optional
+            Termination criterion for MIP solver: solver will terminate when
+            the gap between the primal objective value and the dual objective
+            bound, scaled by the primal objective value, is <= mip_rel_gap.
+
+    Returns
+    -------
+    res : OptimizeResult
+        An instance of :class:`scipy.optimize.OptimizeResult`. The object
+        is guaranteed to have the following attributes.
+
+        status : int
+            An integer representing the exit status of the algorithm.
+
+            ``0`` : Optimal solution found.
+
+            ``1`` : Iteration or time limit reached.
+
+            ``2`` : Problem is infeasible.
+
+            ``3`` : Problem is unbounded.
+
+            ``4`` : Other; see message for details.
+
+        success : bool
+            ``True`` when an optimal solution is found and ``False`` otherwise.
+
+        message : str
+            A string descriptor of the exit status of the algorithm.
+
+        The following attributes will also be present, but the values may be
+        ``None``, depending on the solution status.
+
+        x : ndarray
+            The values of the decision variables that minimize the
+            objective function while satisfying the constraints.
+        fun : float
+            The optimal value of the objective function ``c @ x``.
+        mip_node_count : int
+            The number of subproblems or "nodes" solved by the MILP solver.
+        mip_dual_bound : float
+            The MILP solver's final estimate of the lower bound on the optimal
+            solution.
+        mip_gap : float
+            The difference between the primal objective value and the dual
+            objective bound, scaled by the primal objective value.
+
+    Notes
+    -----
+    `milp` is a wrapper of the HiGHS linear optimization software [1]_. The
+    algorithm is deterministic, and it typically finds the global optimum of
+    moderately challenging mixed-integer linear programs (when it exists).
+
+    References
+    ----------
+    .. [1] Huangfu, Q., Galabova, I., Feldmeier, M., and Hall, J. A. J.
+           "HiGHS - high performance software for linear optimization."
+           https://highs.dev/
+    .. [2] Huangfu, Q. and Hall, J. A. J. "Parallelizing the dual revised
+           simplex method." Mathematical Programming Computation, 10 (1),
+           119-142, 2018. DOI: 10.1007/s12532-017-0130-5
+
+    Examples
+    --------
+    Consider the problem at
+    https://en.wikipedia.org/wiki/Integer_programming#Example, which is
+    expressed as a maximization problem of two variables. Since `milp` requires
+    that the problem be expressed as a minimization problem, the objective
+    function coefficients on the decision variables are:
+
+    >>> import numpy as np
+    >>> c = -np.array([0, 1])
+
+    Note the negative sign: we maximize the original objective function
+    by minimizing the negative of the objective function.
+
+    We collect the coefficients of the constraints into arrays like:
+
+    >>> A = np.array([[-1, 1], [3, 2], [2, 3]])
+    >>> b_u = np.array([1, 12, 12])
+    >>> b_l = np.full_like(b_u, -np.inf)
+
+    Because there is no lower limit on these constraints, we have defined a
+    variable ``b_l`` full of values representing negative infinity. This may
+    be unfamiliar to users of `scipy.optimize.linprog`, which only accepts
+    "less than" (or "upper bound") inequality constraints of the form
+    ``A_ub @ x <= b_u``. By accepting both ``b_l`` and ``b_u`` of constraints
+    ``b_l <= A_ub @ x <= b_u``, `milp` makes it easy to specify "greater than"
+    inequality constraints, "less than" inequality constraints, and equality
+    constraints concisely.
+
+    These arrays are collected into a single `LinearConstraint` object like:
+
+    >>> from scipy.optimize import LinearConstraint
+    >>> constraints = LinearConstraint(A, b_l, b_u)
+
+    The non-negativity bounds on the decision variables are enforced by
+    default, so we do not need to provide an argument for `bounds`.
+
+    Finally, the problem states that both decision variables must be integers:
+
+    >>> integrality = np.ones_like(c)
+
+    We solve the problem like:
+
+    >>> from scipy.optimize import milp
+    >>> res = milp(c=c, constraints=constraints, integrality=integrality)
+    >>> res.x
+    [1.0, 2.0]
+
+    Note that had we solved the relaxed problem (without integrality
+    constraints):
+
+    >>> res = milp(c=c, constraints=constraints)  # OR:
+    >>> # from scipy.optimize import linprog; res = linprog(c, A, b_u)
+    >>> res.x
+    [1.8, 2.8]
+
+    we would not have obtained the correct solution by rounding to the nearest
+    integers.
+
+    Other examples are given :ref:`in the tutorial <tutorial-optimize_milp>`.
+
+    """
+    args_iv = _milp_iv(c, integrality, bounds, constraints, options)
+    c, integrality, lb, ub, indptr, indices, data, b_l, b_u, options = args_iv
+
+    highs_res = _highs_wrapper(c, indptr, indices, data, b_l, b_u,
+                               lb, ub, integrality, options)
+
+    res = {}
+
+    # Convert to scipy-style status and message
+    highs_status = highs_res.get('status', None)
+    highs_message = highs_res.get('message', None)
+    status, message = _highs_to_scipy_status_message(highs_status,
+                                                     highs_message)
+    res['status'] = status
+    res['message'] = message
+    res['success'] = (status == 0)
+    x = highs_res.get('x', None)
+    res['x'] = np.array(x) if x is not None else None
+    res['fun'] = highs_res.get('fun', None)
+    res['mip_node_count'] = highs_res.get('mip_node_count', None)
+    res['mip_dual_bound'] = highs_res.get('mip_dual_bound', None)
+    res['mip_gap'] = highs_res.get('mip_gap', None)
+
+    return OptimizeResult(res)

env-llmeval/lib/python3.10/site-packages/scipy/optimize/_minpack_py.py

@@ -0,0 +1,1157 @@
+import warnings
+from . import _minpack
+
+import numpy as np
+from numpy import (atleast_1d, triu, shape, transpose, zeros, prod, greater,
+                   asarray, inf,
+                   finfo, inexact, issubdtype, dtype)
+from scipy import linalg
+from scipy.linalg import svd, cholesky, solve_triangular, LinAlgError
+from scipy._lib._util import _asarray_validated, _lazywhere, _contains_nan
+from scipy._lib._util import getfullargspec_no_self as _getfullargspec
+from ._optimize import OptimizeResult, _check_unknown_options, OptimizeWarning
+from ._lsq import least_squares
+# from ._lsq.common import make_strictly_feasible
+from ._lsq.least_squares import prepare_bounds
+from scipy.optimize._minimize import Bounds
+
+# deprecated imports to be removed in SciPy 1.13.0
+from numpy import dot, eye, take  # noqa: F401
+from numpy.linalg import inv  # noqa: F401
+
+error = _minpack.error
+
+__all__ = ['fsolve', 'leastsq', 'fixed_point', 'curve_fit']
+
+
+def _check_func(checker, argname, thefunc, x0, args, numinputs,
+                output_shape=None):
+    res = atleast_1d(thefunc(*((x0[:numinputs],) + args)))
+    if (output_shape is not None) and (shape(res) != output_shape):
+        if (output_shape[0] != 1):
+            if len(output_shape) > 1:
+                if output_shape[1] == 1:
+                    return shape(res)
+            msg = f"{checker}: there is a mismatch between the input and output " \
+                  f"shape of the '{argname}' argument"
+            func_name = getattr(thefunc, '__name__', None)
+            if func_name:
+                msg += " '%s'." % func_name
+            else:
+                msg += "."
+            msg += f'Shape should be {output_shape} but it is {shape(res)}.'
+            raise TypeError(msg)
+    if issubdtype(res.dtype, inexact):
+        dt = res.dtype
+    else:
+        dt = dtype(float)
+    return shape(res), dt
+
+
+def fsolve(func, x0, args=(), fprime=None, full_output=0,
+           col_deriv=0, xtol=1.49012e-8, maxfev=0, band=None,
+           epsfcn=None, factor=100, diag=None):
+    """
+    Find the roots of a function.
+
+    Return the roots of the (non-linear) equations defined by
+    ``func(x) = 0`` given a starting estimate.
+
+    Parameters
+    ----------
+    func : callable ``f(x, *args)``
+        A function that takes at least one (possibly vector) argument,
+        and returns a value of the same length.
+    x0 : ndarray
+        The starting estimate for the roots of ``func(x) = 0``.
+    args : tuple, optional
+        Any extra arguments to `func`.
+    fprime : callable ``f(x, *args)``, optional
+        A function to compute the Jacobian of `func` with derivatives
+        across the rows. By default, the Jacobian will be estimated.
+    full_output : bool, optional
+        If True, return optional outputs.
+    col_deriv : bool, optional
+        Specify whether the Jacobian function computes derivatives down
+        the columns (faster, because there is no transpose operation).
+    xtol : float, optional
+        The calculation will terminate if the relative error between two
+        consecutive iterates is at most `xtol`.
+    maxfev : int, optional
+        The maximum number of calls to the function. If zero, then
+        ``100*(N+1)`` is the maximum where N is the number of elements
+        in `x0`.
+    band : tuple, optional
+        If set to a two-sequence containing the number of sub- and
+        super-diagonals within the band of the Jacobi matrix, the
+        Jacobi matrix is considered banded (only for ``fprime=None``).
+    epsfcn : float, optional
+        A suitable step length for the forward-difference
+        approximation of the Jacobian (for ``fprime=None``). If
+        `epsfcn` is less than the machine precision, it is assumed
+        that the relative errors in the functions are of the order of
+        the machine precision.
+    factor : float, optional
+        A parameter determining the initial step bound
+        (``factor * || diag * x||``). Should be in the interval
+        ``(0.1, 100)``.
+    diag : sequence, optional
+        N positive entries that serve as a scale factors for the
+        variables.
+
+    Returns
+    -------
+    x : ndarray
+        The solution (or the result of the last iteration for
+        an unsuccessful call).
+    infodict : dict
+        A dictionary of optional outputs with the keys:
+
+        ``nfev``
+            number of function calls
+        ``njev``
+            number of Jacobian calls
+        ``fvec``
+            function evaluated at the output
+        ``fjac``
+            the orthogonal matrix, q, produced by the QR
+            factorization of the final approximate Jacobian
+            matrix, stored column wise
+        ``r``
+            upper triangular matrix produced by QR factorization
+            of the same matrix
+        ``qtf``
+            the vector ``(transpose(q) * fvec)``
+
+    ier : int
+        An integer flag.  Set to 1 if a solution was found, otherwise refer
+        to `mesg` for more information.
+    mesg : str
+        If no solution is found, `mesg` details the cause of failure.
+
+    See Also
+    --------
+    root : Interface to root finding algorithms for multivariate
+           functions. See the ``method='hybr'`` in particular.
+
+    Notes
+    -----
+    ``fsolve`` is a wrapper around MINPACK's hybrd and hybrj algorithms.
+
+    Examples
+    --------
+    Find a solution to the system of equations:
+    ``x0*cos(x1) = 4,  x1*x0 - x1 = 5``.
+
+    >>> import numpy as np
+    >>> from scipy.optimize import fsolve
+    >>> def func(x):
+    ...     return [x[0] * np.cos(x[1]) - 4,
+    ...             x[1] * x[0] - x[1] - 5]
+    >>> root = fsolve(func, [1, 1])
+    >>> root
+    array([6.50409711, 0.90841421])
+    >>> np.isclose(func(root), [0.0, 0.0])  # func(root) should be almost 0.0.
+    array([ True,  True])
+
+    """
+    options = {'col_deriv': col_deriv,
+               'xtol': xtol,
+               'maxfev': maxfev,
+               'band': band,
+               'eps': epsfcn,
+               'factor': factor,
+               'diag': diag}
+
+    res = _root_hybr(func, x0, args, jac=fprime, **options)
+    if full_output:
+        x = res['x']
+        info = {k: res.get(k)
+                    for k in ('nfev', 'njev', 'fjac', 'r', 'qtf') if k in res}
+        info['fvec'] = res['fun']
+        return x, info, res['status'], res['message']
+    else:
+        status = res['status']
+        msg = res['message']
+        if status == 0:
+            raise TypeError(msg)
+        elif status == 1:
+            pass
+        elif status in [2, 3, 4, 5]:
+            warnings.warn(msg, RuntimeWarning, stacklevel=2)
+        else:
+            raise TypeError(msg)
+        return res['x']
+
+
+def _root_hybr(func, x0, args=(), jac=None,
+               col_deriv=0, xtol=1.49012e-08, maxfev=0, band=None, eps=None,
+               factor=100, diag=None, **unknown_options):
+    """
+    Find the roots of a multivariate function using MINPACK's hybrd and
+    hybrj routines (modified Powell method).
+
+    Options
+    -------
+    col_deriv : bool
+        Specify whether the Jacobian function computes derivatives down
+        the columns (faster, because there is no transpose operation).
+    xtol : float
+        The calculation will terminate if the relative error between two
+        consecutive iterates is at most `xtol`.
+    maxfev : int
+        The maximum number of calls to the function. If zero, then
+        ``100*(N+1)`` is the maximum where N is the number of elements
+        in `x0`.
+    band : tuple
+        If set to a two-sequence containing the number of sub- and
+        super-diagonals within the band of the Jacobi matrix, the
+        Jacobi matrix is considered banded (only for ``fprime=None``).
+    eps : float
+        A suitable step length for the forward-difference
+        approximation of the Jacobian (for ``fprime=None``). If
+        `eps` is less than the machine precision, it is assumed
+        that the relative errors in the functions are of the order of
+        the machine precision.
+    factor : float
+        A parameter determining the initial step bound
+        (``factor * || diag * x||``). Should be in the interval
+        ``(0.1, 100)``.
+    diag : sequence
+        N positive entries that serve as a scale factors for the
+        variables.
+
+    """
+    _check_unknown_options(unknown_options)
+    epsfcn = eps
+
+    x0 = asarray(x0).flatten()
+    n = len(x0)
+    if not isinstance(args, tuple):
+        args = (args,)
+    shape, dtype = _check_func('fsolve', 'func', func, x0, args, n, (n,))
+    if epsfcn is None:
+        epsfcn = finfo(dtype).eps
+    Dfun = jac
+    if Dfun is None:
+        if band is None:
+            ml, mu = -10, -10
+        else:
+            ml, mu = band[:2]
+        if maxfev == 0:
+            maxfev = 200 * (n + 1)
+        retval = _minpack._hybrd(func, x0, args, 1, xtol, maxfev,
+                                 ml, mu, epsfcn, factor, diag)
+    else:
+        _check_func('fsolve', 'fprime', Dfun, x0, args, n, (n, n))
+        if (maxfev == 0):
+            maxfev = 100 * (n + 1)
+        retval = _minpack._hybrj(func, Dfun, x0, args, 1,
+                                 col_deriv, xtol, maxfev, factor, diag)
+
+    x, status = retval[0], retval[-1]
+
+    errors = {0: "Improper input parameters were entered.",
+              1: "The solution converged.",
+              2: "The number of calls to function has "
+                  "reached maxfev = %d." % maxfev,
+              3: "xtol=%f is too small, no further improvement "
+                  "in the approximate\n  solution "
+                  "is possible." % xtol,
+              4: "The iteration is not making good progress, as measured "
+                  "by the \n  improvement from the last five "
+                  "Jacobian evaluations.",
+              5: "The iteration is not making good progress, "
+                  "as measured by the \n  improvement from the last "
+                  "ten iterations.",
+              'unknown': "An error occurred."}
+
+    info = retval[1]
+    info['fun'] = info.pop('fvec')
+    sol = OptimizeResult(x=x, success=(status == 1), status=status,
+                         method="hybr")
+    sol.update(info)
+    try:
+        sol['message'] = errors[status]
+    except KeyError:
+        sol['message'] = errors['unknown']
+
+    return sol
+
+
+LEASTSQ_SUCCESS = [1, 2, 3, 4]
+LEASTSQ_FAILURE = [5, 6, 7, 8]
+
+
+def leastsq(func, x0, args=(), Dfun=None, full_output=False,
+            col_deriv=False, ftol=1.49012e-8, xtol=1.49012e-8,
+            gtol=0.0, maxfev=0, epsfcn=None, factor=100, diag=None):
+    """
+    Minimize the sum of squares of a set of equations.
+
+    ::
+
+        x = arg min(sum(func(y)**2,axis=0))
+                 y
+
+    Parameters
+    ----------
+    func : callable
+        Should take at least one (possibly length ``N`` vector) argument and
+        returns ``M`` floating point numbers. It must not return NaNs or
+        fitting might fail. ``M`` must be greater than or equal to ``N``.
+    x0 : ndarray
+        The starting estimate for the minimization.
+    args : tuple, optional
+        Any extra arguments to func are placed in this tuple.
+    Dfun : callable, optional
+        A function or method to compute the Jacobian of func with derivatives
+        across the rows. If this is None, the Jacobian will be estimated.
+    full_output : bool, optional
+        If ``True``, return all optional outputs (not just `x` and `ier`).
+    col_deriv : bool, optional
+        If ``True``, specify that the Jacobian function computes derivatives
+        down the columns (faster, because there is no transpose operation).
+    ftol : float, optional
+        Relative error desired in the sum of squares.
+    xtol : float, optional
+        Relative error desired in the approximate solution.
+    gtol : float, optional
+        Orthogonality desired between the function vector and the columns of
+        the Jacobian.
+    maxfev : int, optional
+        The maximum number of calls to the function. If `Dfun` is provided,
+        then the default `maxfev` is 100*(N+1) where N is the number of elements
+        in x0, otherwise the default `maxfev` is 200*(N+1).
+    epsfcn : float, optional
+        A variable used in determining a suitable step length for the forward-
+        difference approximation of the Jacobian (for Dfun=None).
+        Normally the actual step length will be sqrt(epsfcn)*x
+        If epsfcn is less than the machine precision, it is assumed that the
+        relative errors are of the order of the machine precision.
+    factor : float, optional
+        A parameter determining the initial step bound
+        (``factor * || diag * x||``). Should be in interval ``(0.1, 100)``.
+    diag : sequence, optional
+        N positive entries that serve as a scale factors for the variables.
+
+    Returns
+    -------
+    x : ndarray
+        The solution (or the result of the last iteration for an unsuccessful
+        call).
+    cov_x : ndarray
+        The inverse of the Hessian. `fjac` and `ipvt` are used to construct an
+        estimate of the Hessian. A value of None indicates a singular matrix,
+        which means the curvature in parameters `x` is numerically flat. To
+        obtain the covariance matrix of the parameters `x`, `cov_x` must be
+        multiplied by the variance of the residuals -- see curve_fit. Only
+        returned if `full_output` is ``True``.
+    infodict : dict
+        a dictionary of optional outputs with the keys:
+
+        ``nfev``
+            The number of function calls
+        ``fvec``
+            The function evaluated at the output
+        ``fjac``
+            A permutation of the R matrix of a QR
+            factorization of the final approximate
+            Jacobian matrix, stored column wise.
+            Together with ipvt, the covariance of the
+            estimate can be approximated.
+        ``ipvt``
+            An integer array of length N which defines
+            a permutation matrix, p, such that
+            fjac*p = q*r, where r is upper triangular
+            with diagonal elements of nonincreasing
+            magnitude. Column j of p is column ipvt(j)
+            of the identity matrix.
+        ``qtf``
+            The vector (transpose(q) * fvec).
+
+        Only returned if `full_output` is ``True``.
+    mesg : str
+        A string message giving information about the cause of failure.
+        Only returned if `full_output` is ``True``.
+    ier : int
+        An integer flag. If it is equal to 1, 2, 3 or 4, the solution was
+        found. Otherwise, the solution was not found. In either case, the
+        optional output variable 'mesg' gives more information.
+
+    See Also
+    --------
+    least_squares : Newer interface to solve nonlinear least-squares problems
+        with bounds on the variables. See ``method='lm'`` in particular.
+
+    Notes
+    -----
+    "leastsq" is a wrapper around MINPACK's lmdif and lmder algorithms.
+
+    cov_x is a Jacobian approximation to the Hessian of the least squares
+    objective function.
+    This approximation assumes that the objective function is based on the
+    difference between some observed target data (ydata) and a (non-linear)
+    function of the parameters `f(xdata, params)` ::
+
+           func(params) = ydata - f(xdata, params)
+
+    so that the objective function is ::
+
+           min   sum((ydata - f(xdata, params))**2, axis=0)
+         params
+
+    The solution, `x`, is always a 1-D array, regardless of the shape of `x0`,
+    or whether `x0` is a scalar.
+
+    Examples
+    --------
+    >>> from scipy.optimize import leastsq
+    >>> def func(x):
+    ...     return 2*(x-3)**2+1
+    >>> leastsq(func, 0)
+    (array([2.99999999]), 1)
+
+    """
+    x0 = asarray(x0).flatten()
+    n = len(x0)
+    if not isinstance(args, tuple):
+        args = (args,)
+    shape, dtype = _check_func('leastsq', 'func', func, x0, args, n)
+    m = shape[0]
+
+    if n > m:
+        raise TypeError(f"Improper input: func input vector length N={n} must"
+                        f" not exceed func output vector length M={m}")
+
+    if epsfcn is None:
+        epsfcn = finfo(dtype).eps
+
+    if Dfun is None:
+        if maxfev == 0:
+            maxfev = 200*(n + 1)
+        retval = _minpack._lmdif(func, x0, args, full_output, ftol, xtol,
+                                 gtol, maxfev, epsfcn, factor, diag)
+    else:
+        if col_deriv:
+            _check_func('leastsq', 'Dfun', Dfun, x0, args, n, (n, m))
+        else:
+            _check_func('leastsq', 'Dfun', Dfun, x0, args, n, (m, n))
+        if maxfev == 0:
+            maxfev = 100 * (n + 1)
+        retval = _minpack._lmder(func, Dfun, x0, args, full_output,
+                                 col_deriv, ftol, xtol, gtol, maxfev,
+                                 factor, diag)
+
+    errors = {0: ["Improper input parameters.", TypeError],
+              1: ["Both actual and predicted relative reductions "
+                  "in the sum of squares\n  are at most %f" % ftol, None],
+              2: ["The relative error between two consecutive "
+                  "iterates is at most %f" % xtol, None],
+              3: ["Both actual and predicted relative reductions in "
+                  f"the sum of squares\n  are at most {ftol:f} and the "
+                  "relative error between two consecutive "
+                  f"iterates is at \n  most {xtol:f}", None],
+              4: ["The cosine of the angle between func(x) and any "
+                  "column of the\n  Jacobian is at most %f in "
+                  "absolute value" % gtol, None],
+              5: ["Number of calls to function has reached "
+                  "maxfev = %d." % maxfev, ValueError],
+              6: ["ftol=%f is too small, no further reduction "
+                  "in the sum of squares\n  is possible." % ftol,
+                  ValueError],
+              7: ["xtol=%f is too small, no further improvement in "
+                  "the approximate\n  solution is possible." % xtol,
+                  ValueError],
+              8: ["gtol=%f is too small, func(x) is orthogonal to the "
+                  "columns of\n  the Jacobian to machine "
+                  "precision." % gtol, ValueError]}
+
+    # The FORTRAN return value (possible return values are >= 0 and <= 8)
+    info = retval[-1]
+
+    if full_output:
+        cov_x = None
+        if info in LEASTSQ_SUCCESS:
+            # This was
+            # perm = take(eye(n), retval[1]['ipvt'] - 1, 0)
+            # r = triu(transpose(retval[1]['fjac'])[:n, :])
+            # R = dot(r, perm)
+            # cov_x = inv(dot(transpose(R), R))
+            # but the explicit dot product was not necessary and sometimes
+            # the result was not symmetric positive definite. See gh-4555.
+            perm = retval[1]['ipvt'] - 1
+            n = len(perm)
+            r = triu(transpose(retval[1]['fjac'])[:n, :])
+            inv_triu = linalg.get_lapack_funcs('trtri', (r,))
+            try:
+                # inverse of permuted matrix is a permutation of matrix inverse
+                invR, trtri_info = inv_triu(r)  # default: upper, non-unit diag
+                if trtri_info != 0:  # explicit comparison for readability
+                    raise LinAlgError(f'trtri returned info {trtri_info}')
+                invR[perm] = invR.copy()
+                cov_x = invR @ invR.T
+            except (LinAlgError, ValueError):
+                pass
+        return (retval[0], cov_x) + retval[1:-1] + (errors[info][0], info)
+    else:
+        if info in LEASTSQ_FAILURE:
+            warnings.warn(errors[info][0], RuntimeWarning, stacklevel=2)
+        elif info == 0:
+            raise errors[info][1](errors[info][0])
+        return retval[0], info
+
+
+def _lightweight_memoizer(f):
+    # very shallow memoization to address gh-13670: only remember the first set
+    # of parameters and corresponding function value, and only attempt to use
+    # them twice (the number of times the function is evaluated at x0).
+    def _memoized_func(params):
+        if _memoized_func.skip_lookup:
+            return f(params)
+
+        if np.all(_memoized_func.last_params == params):
+            return _memoized_func.last_val
+        elif _memoized_func.last_params is not None:
+            _memoized_func.skip_lookup = True
+
+        val = f(params)
+
+        if _memoized_func.last_params is None:
+            _memoized_func.last_params = np.copy(params)
+            _memoized_func.last_val = val
+
+        return val
+
+    _memoized_func.last_params = None
+    _memoized_func.last_val = None
+    _memoized_func.skip_lookup = False
+    return _memoized_func
+
+
+def _wrap_func(func, xdata, ydata, transform):
+    if transform is None:
+        def func_wrapped(params):
+            return func(xdata, *params) - ydata
+    elif transform.size == 1 or transform.ndim == 1:
+        def func_wrapped(params):
+            return transform * (func(xdata, *params) - ydata)
+    else:
+        # Chisq = (y - yd)^T C^{-1} (y-yd)
+        # transform = L such that C = L L^T
+        # C^{-1} = L^{-T} L^{-1}
+        # Chisq = (y - yd)^T L^{-T} L^{-1} (y-yd)
+        # Define (y-yd)' = L^{-1} (y-yd)
+        # by solving
+        # L (y-yd)' = (y-yd)
+        # and minimize (y-yd)'^T (y-yd)'
+        def func_wrapped(params):
+            return solve_triangular(transform, func(xdata, *params) - ydata, lower=True)
+    return func_wrapped
+
+
+def _wrap_jac(jac, xdata, transform):
+    if transform is None:
+        def jac_wrapped(params):
+            return jac(xdata, *params)
+    elif transform.ndim == 1:
+        def jac_wrapped(params):
+            return transform[:, np.newaxis] * np.asarray(jac(xdata, *params))
+    else:
+        def jac_wrapped(params):
+            return solve_triangular(transform,
+                                    np.asarray(jac(xdata, *params)),
+                                    lower=True)
+    return jac_wrapped
+
+
+def _initialize_feasible(lb, ub):
+    p0 = np.ones_like(lb)
+    lb_finite = np.isfinite(lb)
+    ub_finite = np.isfinite(ub)
+
+    mask = lb_finite & ub_finite
+    p0[mask] = 0.5 * (lb[mask] + ub[mask])
+
+    mask = lb_finite & ~ub_finite
+    p0[mask] = lb[mask] + 1
+
+    mask = ~lb_finite & ub_finite
+    p0[mask] = ub[mask] - 1
+
+    return p0
+
+
+def curve_fit(f, xdata, ydata, p0=None, sigma=None, absolute_sigma=False,
+              check_finite=None, bounds=(-np.inf, np.inf), method=None,
+              jac=None, *, full_output=False, nan_policy=None,
+              **kwargs):
+    """
+    Use non-linear least squares to fit a function, f, to data.
+
+    Assumes ``ydata = f(xdata, *params) + eps``.
+
+    Parameters
+    ----------
+    f : callable
+        The model function, f(x, ...). It must take the independent
+        variable as the first argument and the parameters to fit as
+        separate remaining arguments.
+    xdata : array_like
+        The independent variable where the data is measured.
+        Should usually be an M-length sequence or an (k,M)-shaped array for
+        functions with k predictors, and each element should be float
+        convertible if it is an array like object.
+    ydata : array_like
+        The dependent data, a length M array - nominally ``f(xdata, ...)``.
+    p0 : array_like, optional
+        Initial guess for the parameters (length N). If None, then the
+        initial values will all be 1 (if the number of parameters for the
+        function can be determined using introspection, otherwise a
+        ValueError is raised).
+    sigma : None or scalar or M-length sequence or MxM array, optional
+        Determines the uncertainty in `ydata`. If we define residuals as
+        ``r = ydata - f(xdata, *popt)``, then the interpretation of `sigma`
+        depends on its number of dimensions:
+
+            - A scalar or 1-D `sigma` should contain values of standard deviations of
+              errors in `ydata`. In this case, the optimized function is
+              ``chisq = sum((r / sigma) ** 2)``.
+
+            - A 2-D `sigma` should contain the covariance matrix of
+              errors in `ydata`. In this case, the optimized function is
+              ``chisq = r.T @ inv(sigma) @ r``.
+
+              .. versionadded:: 0.19
+
+        None (default) is equivalent of 1-D `sigma` filled with ones.
+    absolute_sigma : bool, optional
+        If True, `sigma` is used in an absolute sense and the estimated parameter
+        covariance `pcov` reflects these absolute values.
+
+        If False (default), only the relative magnitudes of the `sigma` values matter.
+        The returned parameter covariance matrix `pcov` is based on scaling
+        `sigma` by a constant factor. This constant is set by demanding that the
+        reduced `chisq` for the optimal parameters `popt` when using the
+        *scaled* `sigma` equals unity. In other words, `sigma` is scaled to
+        match the sample variance of the residuals after the fit. Default is False.
+        Mathematically,
+        ``pcov(absolute_sigma=False) = pcov(absolute_sigma=True) * chisq(popt)/(M-N)``
+    check_finite : bool, optional
+        If True, check that the input arrays do not contain nans of infs,
+        and raise a ValueError if they do. Setting this parameter to
+        False may silently produce nonsensical results if the input arrays
+        do contain nans. Default is True if `nan_policy` is not specified
+        explicitly and False otherwise.
+    bounds : 2-tuple of array_like or `Bounds`, optional
+        Lower and upper bounds on parameters. Defaults to no bounds.
+        There are two ways to specify the bounds:
+
+            - Instance of `Bounds` class.
+
+            - 2-tuple of array_like: Each element of the tuple must be either
+              an array with the length equal to the number of parameters, or a
+              scalar (in which case the bound is taken to be the same for all
+              parameters). Use ``np.inf`` with an appropriate sign to disable
+              bounds on all or some parameters.
+
+    method : {'lm', 'trf', 'dogbox'}, optional
+        Method to use for optimization. See `least_squares` for more details.
+        Default is 'lm' for unconstrained problems and 'trf' if `bounds` are
+        provided. The method 'lm' won't work when the number of observations
+        is less than the number of variables, use 'trf' or 'dogbox' in this
+        case.
+
+        .. versionadded:: 0.17
+    jac : callable, string or None, optional
+        Function with signature ``jac(x, ...)`` which computes the Jacobian
+        matrix of the model function with respect to parameters as a dense
+        array_like structure. It will be scaled according to provided `sigma`.
+        If None (default), the Jacobian will be estimated numerically.
+        String keywords for 'trf' and 'dogbox' methods can be used to select
+        a finite difference scheme, see `least_squares`.
+
+        .. versionadded:: 0.18
+    full_output : boolean, optional
+        If True, this function returns additioal information: `infodict`,
+        `mesg`, and `ier`.
+
+        .. versionadded:: 1.9
+    nan_policy : {'raise', 'omit', None}, optional
+        Defines how to handle when input contains nan.
+        The following options are available (default is None):
+
+          * 'raise': throws an error
+          * 'omit': performs the calculations ignoring nan values
+          * None: no special handling of NaNs is performed
+            (except what is done by check_finite); the behavior when NaNs
+            are present is implementation-dependent and may change.
+
+        Note that if this value is specified explicitly (not None),
+        `check_finite` will be set as False.
+
+        .. versionadded:: 1.11
+    **kwargs
+        Keyword arguments passed to `leastsq` for ``method='lm'`` or
+        `least_squares` otherwise.
+
+    Returns
+    -------
+    popt : array
+        Optimal values for the parameters so that the sum of the squared
+        residuals of ``f(xdata, *popt) - ydata`` is minimized.
+    pcov : 2-D array
+        The estimated approximate covariance of popt. The diagonals provide
+        the variance of the parameter estimate. To compute one standard
+        deviation errors on the parameters, use
+        ``perr = np.sqrt(np.diag(pcov))``. Note that the relationship between
+        `cov` and parameter error estimates is derived based on a linear
+        approximation to the model function around the optimum [1].
+        When this approximation becomes inaccurate, `cov` may not provide an
+        accurate measure of uncertainty.
+
+        How the `sigma` parameter affects the estimated covariance
+        depends on `absolute_sigma` argument, as described above.
+
+        If the Jacobian matrix at the solution doesn't have a full rank, then
+        'lm' method returns a matrix filled with ``np.inf``, on the other hand
+        'trf'  and 'dogbox' methods use Moore-Penrose pseudoinverse to compute
+        the covariance matrix. Covariance matrices with large condition numbers
+        (e.g. computed with `numpy.linalg.cond`) may indicate that results are
+        unreliable.
+    infodict : dict (returned only if `full_output` is True)
+        a dictionary of optional outputs with the keys:
+
+        ``nfev``
+            The number of function calls. Methods 'trf' and 'dogbox' do not
+            count function calls for numerical Jacobian approximation,
+            as opposed to 'lm' method.
+        ``fvec``
+            The residual values evaluated at the solution, for a 1-D `sigma`
+            this is ``(f(x, *popt) - ydata)/sigma``.
+        ``fjac``
+            A permutation of the R matrix of a QR
+            factorization of the final approximate
+            Jacobian matrix, stored column wise.
+            Together with ipvt, the covariance of the
+            estimate can be approximated.
+            Method 'lm' only provides this information.
+        ``ipvt``
+            An integer array of length N which defines
+            a permutation matrix, p, such that
+            fjac*p = q*r, where r is upper triangular
+            with diagonal elements of nonincreasing
+            magnitude. Column j of p is column ipvt(j)
+            of the identity matrix.
+            Method 'lm' only provides this information.
+        ``qtf``
+            The vector (transpose(q) * fvec).
+            Method 'lm' only provides this information.
+
+        .. versionadded:: 1.9
+    mesg : str (returned only if `full_output` is True)
+        A string message giving information about the solution.
+
+        .. versionadded:: 1.9
+    ier : int (returned only if `full_output` is True)
+        An integer flag. If it is equal to 1, 2, 3 or 4, the solution was
+        found. Otherwise, the solution was not found. In either case, the
+        optional output variable `mesg` gives more information.
+
+        .. versionadded:: 1.9
+
+    Raises
+    ------
+    ValueError
+        if either `ydata` or `xdata` contain NaNs, or if incompatible options
+        are used.
+
+    RuntimeError
+        if the least-squares minimization fails.
+
+    OptimizeWarning
+        if covariance of the parameters can not be estimated.
+
+    See Also
+    --------
+    least_squares : Minimize the sum of squares of nonlinear functions.
+    scipy.stats.linregress : Calculate a linear least squares regression for
+                             two sets of measurements.
+
+    Notes
+    -----
+    Users should ensure that inputs `xdata`, `ydata`, and the output of `f`
+    are ``float64``, or else the optimization may return incorrect results.
+
+    With ``method='lm'``, the algorithm uses the Levenberg-Marquardt algorithm
+    through `leastsq`. Note that this algorithm can only deal with
+    unconstrained problems.
+
+    Box constraints can be handled by methods 'trf' and 'dogbox'. Refer to
+    the docstring of `least_squares` for more information.
+
+    Parameters to be fitted must have similar scale. Differences of multiple
+    orders of magnitude can lead to incorrect results. For the 'trf' and
+    'dogbox' methods, the `x_scale` keyword argument can be used to scale
+    the parameters.
+
+    References
+    ----------
+    [1] K. Vugrin et al. Confidence region estimation techniques for nonlinear
+        regression in groundwater flow: Three case studies. Water Resources
+        Research, Vol. 43, W03423, :doi:`10.1029/2005WR004804`
+
+    Examples
+    --------
+    >>> import numpy as np
+    >>> import matplotlib.pyplot as plt
+    >>> from scipy.optimize import curve_fit
+
+    >>> def func(x, a, b, c):
+    ...     return a * np.exp(-b * x) + c
+
+    Define the data to be fit with some noise:
+
+    >>> xdata = np.linspace(0, 4, 50)
+    >>> y = func(xdata, 2.5, 1.3, 0.5)
+    >>> rng = np.random.default_rng()
+    >>> y_noise = 0.2 * rng.normal(size=xdata.size)
+    >>> ydata = y + y_noise
+    >>> plt.plot(xdata, ydata, 'b-', label='data')
+
+    Fit for the parameters a, b, c of the function `func`:
+
+    >>> popt, pcov = curve_fit(func, xdata, ydata)
+    >>> popt
+    array([2.56274217, 1.37268521, 0.47427475])
+    >>> plt.plot(xdata, func(xdata, *popt), 'r-',
+    ...          label='fit: a=%5.3f, b=%5.3f, c=%5.3f' % tuple(popt))
+
+    Constrain the optimization to the region of ``0 <= a <= 3``,
+    ``0 <= b <= 1`` and ``0 <= c <= 0.5``:
+
+    >>> popt, pcov = curve_fit(func, xdata, ydata, bounds=(0, [3., 1., 0.5]))
+    >>> popt
+    array([2.43736712, 1.        , 0.34463856])
+    >>> plt.plot(xdata, func(xdata, *popt), 'g--',
+    ...          label='fit: a=%5.3f, b=%5.3f, c=%5.3f' % tuple(popt))
+
+    >>> plt.xlabel('x')
+    >>> plt.ylabel('y')
+    >>> plt.legend()
+    >>> plt.show()
+
+    For reliable results, the model `func` should not be overparametrized;
+    redundant parameters can cause unreliable covariance matrices and, in some
+    cases, poorer quality fits. As a quick check of whether the model may be
+    overparameterized, calculate the condition number of the covariance matrix:
+
+    >>> np.linalg.cond(pcov)
+    34.571092161547405  # may vary
+
+    The value is small, so it does not raise much concern. If, however, we were
+    to add a fourth parameter ``d`` to `func` with the same effect as ``a``:
+
+    >>> def func2(x, a, b, c, d):
+    ...     return a * d * np.exp(-b * x) + c  # a and d are redundant
+    >>> popt, pcov = curve_fit(func2, xdata, ydata)
+    >>> np.linalg.cond(pcov)
+    1.13250718925596e+32  # may vary
+
+    Such a large value is cause for concern. The diagonal elements of the
+    covariance matrix, which is related to uncertainty of the fit, gives more
+    information:
+
+    >>> np.diag(pcov)
+    array([1.48814742e+29, 3.78596560e-02, 5.39253738e-03, 2.76417220e+28])  # may vary
+
+    Note that the first and last terms are much larger than the other elements,
+    suggesting that the optimal values of these parameters are ambiguous and
+    that only one of these parameters is needed in the model.
+
+    If the optimal parameters of `f` differ by multiple orders of magnitude, the
+    resulting fit can be inaccurate. Sometimes, `curve_fit` can fail to find any
+    results:
+
+    >>> ydata = func(xdata, 500000, 0.01, 15)
+    >>> try:
+    ...     popt, pcov = curve_fit(func, xdata, ydata, method = 'trf')
+    ... except RuntimeError as e:
+    ...     print(e)
+    Optimal parameters not found: The maximum number of function evaluations is exceeded.
+
+    If parameter scale is roughly known beforehand, it can be defined in
+    `x_scale` argument:
+
+    >>> popt, pcov = curve_fit(func, xdata, ydata, method = 'trf',
+    ...                        x_scale = [1000, 1, 1])
+    >>> popt
+    array([5.00000000e+05, 1.00000000e-02, 1.49999999e+01])
+    """
+    if p0 is None:
+        # determine number of parameters by inspecting the function
+        sig = _getfullargspec(f)
+        args = sig.args
+        if len(args) < 2:
+            raise ValueError("Unable to determine number of fit parameters.")
+        n = len(args) - 1
+    else:
+        p0 = np.atleast_1d(p0)
+        n = p0.size
+
+    if isinstance(bounds, Bounds):
+        lb, ub = bounds.lb, bounds.ub
+    else:
+        lb, ub = prepare_bounds(bounds, n)
+    if p0 is None:
+        p0 = _initialize_feasible(lb, ub)
+
+    bounded_problem = np.any((lb > -np.inf) | (ub < np.inf))
+    if method is None:
+        if bounded_problem:
+            method = 'trf'
+        else:
+            method = 'lm'
+
+    if method == 'lm' and bounded_problem:
+        raise ValueError("Method 'lm' only works for unconstrained problems. "
+                         "Use 'trf' or 'dogbox' instead.")
+
+    if check_finite is None:
+        check_finite = True if nan_policy is None else False
+
+    # optimization may produce garbage for float32 inputs, cast them to float64
+    if check_finite:
+        ydata = np.asarray_chkfinite(ydata, float)
+    else:
+        ydata = np.asarray(ydata, float)
+
+    if isinstance(xdata, (list, tuple, np.ndarray)):
+        # `xdata` is passed straight to the user-defined `f`, so allow
+        # non-array_like `xdata`.
+        if check_finite:
+            xdata = np.asarray_chkfinite(xdata, float)
+        else:
+            xdata = np.asarray(xdata, float)
+
+    if ydata.size == 0:
+        raise ValueError("`ydata` must not be empty!")
+
+    # nan handling is needed only if check_finite is False because if True,
+    # the x-y data are already checked, and they don't contain nans.
+    if not check_finite and nan_policy is not None:
+        if nan_policy == "propagate":
+            raise ValueError("`nan_policy='propagate'` is not supported "
+                             "by this function.")
+
+        policies = [None, 'raise', 'omit']
+        x_contains_nan, nan_policy = _contains_nan(xdata, nan_policy,
+                                                   policies=policies)
+        y_contains_nan, nan_policy = _contains_nan(ydata, nan_policy,
+                                                   policies=policies)
+
+        if (x_contains_nan or y_contains_nan) and nan_policy == 'omit':
+            # ignore NaNs for N dimensional arrays
+            has_nan = np.isnan(xdata)
+            has_nan = has_nan.any(axis=tuple(range(has_nan.ndim-1)))
+            has_nan |= np.isnan(ydata)
+
+            xdata = xdata[..., ~has_nan]
+            ydata = ydata[~has_nan]
+
+    # Determine type of sigma
+    if sigma is not None:
+        sigma = np.asarray(sigma)
+
+        # if 1-D or a scalar, sigma are errors, define transform = 1/sigma
+        if sigma.size == 1 or sigma.shape == (ydata.size, ):
+            transform = 1.0 / sigma
+        # if 2-D, sigma is the covariance matrix,
+        # define transform = L such that L L^T = C
+        elif sigma.shape == (ydata.size, ydata.size):
+            try:
+                # scipy.linalg.cholesky requires lower=True to return L L^T = A
+                transform = cholesky(sigma, lower=True)
+            except LinAlgError as e:
+                raise ValueError("`sigma` must be positive definite.") from e
+        else:
+            raise ValueError("`sigma` has incorrect shape.")
+    else:
+        transform = None
+
+    func = _lightweight_memoizer(_wrap_func(f, xdata, ydata, transform))
+
+    if callable(jac):
+        jac = _lightweight_memoizer(_wrap_jac(jac, xdata, transform))
+    elif jac is None and method != 'lm':
+        jac = '2-point'
+
+    if 'args' in kwargs:
+        # The specification for the model function `f` does not support
+        # additional arguments. Refer to the `curve_fit` docstring for
+        # acceptable call signatures of `f`.
+        raise ValueError("'args' is not a supported keyword argument.")
+
+    if method == 'lm':
+        # if ydata.size == 1, this might be used for broadcast.
+        if ydata.size != 1 and n > ydata.size:
+            raise TypeError(f"The number of func parameters={n} must not"
+                            f" exceed the number of data points={ydata.size}")
+        res = leastsq(func, p0, Dfun=jac, full_output=1, **kwargs)
+        popt, pcov, infodict, errmsg, ier = res
+        ysize = len(infodict['fvec'])
+        cost = np.sum(infodict['fvec'] ** 2)
+        if ier not in [1, 2, 3, 4]:
+            raise RuntimeError("Optimal parameters not found: " + errmsg)
+    else:
+        # Rename maxfev (leastsq) to max_nfev (least_squares), if specified.
+        if 'max_nfev' not in kwargs:
+            kwargs['max_nfev'] = kwargs.pop('maxfev', None)
+
+        res = least_squares(func, p0, jac=jac, bounds=bounds, method=method,
+                            **kwargs)
+
+        if not res.success:
+            raise RuntimeError("Optimal parameters not found: " + res.message)
+
+        infodict = dict(nfev=res.nfev, fvec=res.fun)
+        ier = res.status
+        errmsg = res.message
+
+        ysize = len(res.fun)
+        cost = 2 * res.cost  # res.cost is half sum of squares!
+        popt = res.x
+
+        # Do Moore-Penrose inverse discarding zero singular values.
+        _, s, VT = svd(res.jac, full_matrices=False)
+        threshold = np.finfo(float).eps * max(res.jac.shape) * s[0]
+        s = s[s > threshold]
+        VT = VT[:s.size]
+        pcov = np.dot(VT.T / s**2, VT)
+
+    warn_cov = False
+    if pcov is None or np.isnan(pcov).any():
+        # indeterminate covariance
+        pcov = zeros((len(popt), len(popt)), dtype=float)
+        pcov.fill(inf)
+        warn_cov = True
+    elif not absolute_sigma:
+        if ysize > p0.size:
+            s_sq = cost / (ysize - p0.size)
+            pcov = pcov * s_sq
+        else:
+            pcov.fill(inf)
+            warn_cov = True
+
+    if warn_cov:
+        warnings.warn('Covariance of the parameters could not be estimated',
+                      category=OptimizeWarning, stacklevel=2)
+
+    if full_output:
+        return popt, pcov, infodict, errmsg, ier
+    else:
+        return popt, pcov
+
+
+def check_gradient(fcn, Dfcn, x0, args=(), col_deriv=0):
+    """Perform a simple check on the gradient for correctness.
+
+    """
+
+    x = atleast_1d(x0)
+    n = len(x)
+    x = x.reshape((n,))
+    fvec = atleast_1d(fcn(x, *args))
+    m = len(fvec)
+    fvec = fvec.reshape((m,))
+    ldfjac = m
+    fjac = atleast_1d(Dfcn(x, *args))
+    fjac = fjac.reshape((m, n))
+    if col_deriv == 0:
+        fjac = transpose(fjac)
+
+    xp = zeros((n,), float)
+    err = zeros((m,), float)
+    fvecp = None
+    _minpack._chkder(m, n, x, fvec, fjac, ldfjac, xp, fvecp, 1, err)
+
+    fvecp = atleast_1d(fcn(xp, *args))
+    fvecp = fvecp.reshape((m,))
+    _minpack._chkder(m, n, x, fvec, fjac, ldfjac, xp, fvecp, 2, err)
+
+    good = (prod(greater(err, 0.5), axis=0))
+
+    return (good, err)
+
+
+def _del2(p0, p1, d):
+    return p0 - np.square(p1 - p0) / d
+
+
+def _relerr(actual, desired):
+    return (actual - desired) / desired
+
+
+def _fixed_point_helper(func, x0, args, xtol, maxiter, use_accel):
+    p0 = x0
+    for i in range(maxiter):
+        p1 = func(p0, *args)
+        if use_accel:
+            p2 = func(p1, *args)
+            d = p2 - 2.0 * p1 + p0
+            p = _lazywhere(d != 0, (p0, p1, d), f=_del2, fillvalue=p2)
+        else:
+            p = p1
+        relerr = _lazywhere(p0 != 0, (p, p0), f=_relerr, fillvalue=p)
+        if np.all(np.abs(relerr) < xtol):
+            return p
+        p0 = p
+    msg = "Failed to converge after %d iterations, value is %s" % (maxiter, p)
+    raise RuntimeError(msg)
+
+
+def fixed_point(func, x0, args=(), xtol=1e-8, maxiter=500, method='del2'):
+    """
+    Find a fixed point of the function.
+
+    Given a function of one or more variables and a starting point, find a
+    fixed point of the function: i.e., where ``func(x0) == x0``.
+
+    Parameters
+    ----------
+    func : function
+        Function to evaluate.
+    x0 : array_like
+        Fixed point of function.
+    args : tuple, optional
+        Extra arguments to `func`.
+    xtol : float, optional
+        Convergence tolerance, defaults to 1e-08.
+    maxiter : int, optional
+        Maximum number of iterations, defaults to 500.
+    method : {"del2", "iteration"}, optional
+        Method of finding the fixed-point, defaults to "del2",
+        which uses Steffensen's Method with Aitken's ``Del^2``
+        convergence acceleration [1]_. The "iteration" method simply iterates
+        the function until convergence is detected, without attempting to
+        accelerate the convergence.
+
+    References
+    ----------
+    .. [1] Burden, Faires, "Numerical Analysis", 5th edition, pg. 80
+
+    Examples
+    --------
+    >>> import numpy as np
+    >>> from scipy import optimize
+    >>> def func(x, c1, c2):
+    ...    return np.sqrt(c1/(x+c2))
+    >>> c1 = np.array([10,12.])
+    >>> c2 = np.array([3, 5.])
+    >>> optimize.fixed_point(func, [1.2, 1.3], args=(c1,c2))
+    array([ 1.4920333 ,  1.37228132])
+
+    """
+    use_accel = {'del2': True, 'iteration': False}[method]
+    x0 = _asarray_validated(x0, as_inexact=True)
+    return _fixed_point_helper(func, x0, args, xtol, maxiter, use_accel)

env-llmeval/lib/python3.10/site-packages/scipy/optimize/_nnls.py

@@ -0,0 +1,164 @@
+import numpy as np
+from scipy.linalg import solve, LinAlgWarning
+import warnings
+
+__all__ = ['nnls']
+
+
+def nnls(A, b, maxiter=None, *, atol=None):
+    """
+    Solve ``argmin_x || Ax - b ||_2`` for ``x>=0``.
+
+    This problem, often called as NonNegative Least Squares, is a convex
+    optimization problem with convex constraints. It typically arises when
+    the ``x`` models quantities for which only nonnegative values are
+    attainable; weight of ingredients, component costs and so on.
+
+    Parameters
+    ----------
+    A : (m, n) ndarray
+        Coefficient array
+    b : (m,) ndarray, float
+        Right-hand side vector.
+    maxiter: int, optional
+        Maximum number of iterations, optional. Default value is ``3 * n``.
+    atol: float
+        Tolerance value used in the algorithm to assess closeness to zero in
+        the projected residual ``(A.T @ (A x - b)`` entries. Increasing this
+        value relaxes the solution constraints. A typical relaxation value can
+        be selected as ``max(m, n) * np.linalg.norm(a, 1) * np.spacing(1.)``.
+        This value is not set as default since the norm operation becomes
+        expensive for large problems hence can be used only when necessary.
+
+    Returns
+    -------
+    x : ndarray
+        Solution vector.
+    rnorm : float
+        The 2-norm of the residual, ``|| Ax-b ||_2``.
+
+    See Also
+    --------
+    lsq_linear : Linear least squares with bounds on the variables
+
+    Notes
+    -----
+    The code is based on [2]_ which is an improved version of the classical
+    algorithm of [1]_. It utilizes an active set method and solves the KKT
+    (Karush-Kuhn-Tucker) conditions for the non-negative least squares problem.
+
+    References
+    ----------
+    .. [1] : Lawson C., Hanson R.J., "Solving Least Squares Problems", SIAM,
+       1995, :doi:`10.1137/1.9781611971217`
+    .. [2] : Bro, Rasmus and de Jong, Sijmen, "A Fast Non-Negativity-
+       Constrained Least Squares Algorithm", Journal Of Chemometrics, 1997,
+       :doi:`10.1002/(SICI)1099-128X(199709/10)11:5<393::AID-CEM483>3.0.CO;2-L`
+
+     Examples
+    --------
+    >>> import numpy as np
+    >>> from scipy.optimize import nnls
+    ...
+    >>> A = np.array([[1, 0], [1, 0], [0, 1]])
+    >>> b = np.array([2, 1, 1])
+    >>> nnls(A, b)
+    (array([1.5, 1. ]), 0.7071067811865475)
+
+    >>> b = np.array([-1, -1, -1])
+    >>> nnls(A, b)
+    (array([0., 0.]), 1.7320508075688772)
+
+    """
+
+    A = np.asarray_chkfinite(A)
+    b = np.asarray_chkfinite(b)
+
+    if len(A.shape) != 2:
+        raise ValueError("Expected a two-dimensional array (matrix)" +
+                         f", but the shape of A is {A.shape}")
+    if len(b.shape) != 1:
+        raise ValueError("Expected a one-dimensional array (vector)" +
+                         f", but the shape of b is {b.shape}")
+
+    m, n = A.shape
+
+    if m != b.shape[0]:
+        raise ValueError(
+                "Incompatible dimensions. The first dimension of " +
+                f"A is {m}, while the shape of b is {(b.shape[0], )}")
+
+    x, rnorm, mode = _nnls(A, b, maxiter, tol=atol)
+    if mode != 1:
+        raise RuntimeError("Maximum number of iterations reached.")
+
+    return x, rnorm
+
+
+def _nnls(A, b, maxiter=None, tol=None):
+    """
+    This is a single RHS algorithm from ref [2] above. For multiple RHS
+    support, the algorithm is given in  :doi:`10.1002/cem.889`
+    """
+    m, n = A.shape
+
+    AtA = A.T @ A
+    Atb = b @ A  # Result is 1D - let NumPy figure it out
+
+    if not maxiter:
+        maxiter = 3*n
+    if tol is None:
+        tol = 10 * max(m, n) * np.spacing(1.)
+
+    # Initialize vars
+    x = np.zeros(n, dtype=np.float64)
+    s = np.zeros(n, dtype=np.float64)
+    # Inactive constraint switches
+    P = np.zeros(n, dtype=bool)
+
+    # Projected residual
+    w = Atb.copy().astype(np.float64)  # x=0. Skip (-AtA @ x) term
+
+    # Overall iteration counter
+    # Outer loop is not counted, inner iter is counted across outer spins
+    iter = 0
+
+    while (not P.all()) and (w[~P] > tol).any():  # B
+        # Get the "most" active coeff index and move to inactive set
+        k = np.argmax(w * (~P))  # B.2
+        P[k] = True  # B.3
+
+        # Iteration solution
+        s[:] = 0.
+        # B.4
+        with warnings.catch_warnings():
+            warnings.filterwarnings('ignore', message='Ill-conditioned matrix',
+                                    category=LinAlgWarning)
+            s[P] = solve(AtA[np.ix_(P, P)], Atb[P], assume_a='sym', check_finite=False)
+
+        # Inner loop
+        while (iter < maxiter) and (s[P].min() < 0):  # C.1
+            iter += 1
+            inds = P * (s < 0)
+            alpha = (x[inds] / (x[inds] - s[inds])).min()  # C.2
+            x *= (1 - alpha)
+            x += alpha*s
+            P[x <= tol] = False
+            with warnings.catch_warnings():
+                warnings.filterwarnings('ignore', message='Ill-conditioned matrix',
+                                        category=LinAlgWarning)
+                s[P] = solve(AtA[np.ix_(P, P)], Atb[P], assume_a='sym',
+                             check_finite=False)
+            s[~P] = 0  # C.6
+
+        x[:] = s[:]
+        w[:] = Atb - AtA @ x
+
+        if iter == maxiter:
+            # Typically following line should return
+            # return x, np.linalg.norm(A@x - b), -1
+            # however at the top level, -1 raises an exception wasting norm
+            # Instead return dummy number 0.
+            return x, 0., -1
+
+    return x, np.linalg.norm(A@x - b), 1

env-llmeval/lib/python3.10/site-packages/scipy/optimize/_nonlin.py

@@ -0,0 +1,1584 @@
+# Copyright (C) 2009, Pauli Virtanen <[email protected]>
+# Distributed under the same license as SciPy.
+
+import inspect
+import sys
+import warnings
+
+import numpy as np
+from numpy import asarray, dot, vdot
+
+from scipy.linalg import norm, solve, inv, qr, svd, LinAlgError
+import scipy.sparse.linalg
+import scipy.sparse
+from scipy.linalg import get_blas_funcs
+from scipy._lib._util import getfullargspec_no_self as _getfullargspec
+from ._linesearch import scalar_search_wolfe1, scalar_search_armijo
+
+
+__all__ = [
+    'broyden1', 'broyden2', 'anderson', 'linearmixing',
+    'diagbroyden', 'excitingmixing', 'newton_krylov',
+    'BroydenFirst', 'KrylovJacobian', 'InverseJacobian', 'NoConvergence']
+
+#------------------------------------------------------------------------------
+# Utility functions
+#------------------------------------------------------------------------------
+
+
+class NoConvergence(Exception):
+    """Exception raised when nonlinear solver fails to converge within the specified
+    `maxiter`."""
+    pass
+
+
+def maxnorm(x):
+    return np.absolute(x).max()
+
+
+def _as_inexact(x):
+    """Return `x` as an array, of either floats or complex floats"""
+    x = asarray(x)
+    if not np.issubdtype(x.dtype, np.inexact):
+        return asarray(x, dtype=np.float64)
+    return x
+
+
+def _array_like(x, x0):
+    """Return ndarray `x` as same array subclass and shape as `x0`"""
+    x = np.reshape(x, np.shape(x0))
+    wrap = getattr(x0, '__array_wrap__', x.__array_wrap__)
+    return wrap(x)
+
+
+def _safe_norm(v):
+    if not np.isfinite(v).all():
+        return np.array(np.inf)
+    return norm(v)
+
+#------------------------------------------------------------------------------
+# Generic nonlinear solver machinery
+#------------------------------------------------------------------------------
+
+
+_doc_parts = dict(
+    params_basic="""
+    F : function(x) -> f
+        Function whose root to find; should take and return an array-like
+        object.
+    xin : array_like
+        Initial guess for the solution
+    """.strip(),
+    params_extra="""
+    iter : int, optional
+        Number of iterations to make. If omitted (default), make as many
+        as required to meet tolerances.
+    verbose : bool, optional
+        Print status to stdout on every iteration.
+    maxiter : int, optional
+        Maximum number of iterations to make. If more are needed to
+        meet convergence, `NoConvergence` is raised.
+    f_tol : float, optional
+        Absolute tolerance (in max-norm) for the residual.
+        If omitted, default is 6e-6.
+    f_rtol : float, optional
+        Relative tolerance for the residual. If omitted, not used.
+    x_tol : float, optional
+        Absolute minimum step size, as determined from the Jacobian
+        approximation. If the step size is smaller than this, optimization
+        is terminated as successful. If omitted, not used.
+    x_rtol : float, optional
+        Relative minimum step size. If omitted, not used.
+    tol_norm : function(vector) -> scalar, optional
+        Norm to use in convergence check. Default is the maximum norm.
+    line_search : {None, 'armijo' (default), 'wolfe'}, optional
+        Which type of a line search to use to determine the step size in the
+        direction given by the Jacobian approximation. Defaults to 'armijo'.
+    callback : function, optional
+        Optional callback function. It is called on every iteration as
+        ``callback(x, f)`` where `x` is the current solution and `f`
+        the corresponding residual.
+
+    Returns
+    -------
+    sol : ndarray
+        An array (of similar array type as `x0`) containing the final solution.
+
+    Raises
+    ------
+    NoConvergence
+        When a solution was not found.
+
+    """.strip()
+)
+
+
+def _set_doc(obj):
+    if obj.__doc__:
+        obj.__doc__ = obj.__doc__ % _doc_parts
+
+
+def nonlin_solve(F, x0, jacobian='krylov', iter=None, verbose=False,
+                 maxiter=None, f_tol=None, f_rtol=None, x_tol=None, x_rtol=None,
+                 tol_norm=None, line_search='armijo', callback=None,
+                 full_output=False, raise_exception=True):
+    """
+    Find a root of a function, in a way suitable for large-scale problems.
+
+    Parameters
+    ----------
+    %(params_basic)s
+    jacobian : Jacobian
+        A Jacobian approximation: `Jacobian` object or something that
+        `asjacobian` can transform to one. Alternatively, a string specifying
+        which of the builtin Jacobian approximations to use:
+
+            krylov, broyden1, broyden2, anderson
+            diagbroyden, linearmixing, excitingmixing
+
+    %(params_extra)s
+    full_output : bool
+        If true, returns a dictionary `info` containing convergence
+        information.
+    raise_exception : bool
+        If True, a `NoConvergence` exception is raise if no solution is found.
+
+    See Also
+    --------
+    asjacobian, Jacobian
+
+    Notes
+    -----
+    This algorithm implements the inexact Newton method, with
+    backtracking or full line searches. Several Jacobian
+    approximations are available, including Krylov and Quasi-Newton
+    methods.
+
+    References
+    ----------
+    .. [KIM] C. T. Kelley, \"Iterative Methods for Linear and Nonlinear
+       Equations\". Society for Industrial and Applied Mathematics. (1995)
+       https://archive.siam.org/books/kelley/fr16/
+
+    """
+    # Can't use default parameters because it's being explicitly passed as None
+    # from the calling function, so we need to set it here.
+    tol_norm = maxnorm if tol_norm is None else tol_norm
+    condition = TerminationCondition(f_tol=f_tol, f_rtol=f_rtol,
+                                     x_tol=x_tol, x_rtol=x_rtol,
+                                     iter=iter, norm=tol_norm)
+
+    x0 = _as_inexact(x0)
+    def func(z):
+        return _as_inexact(F(_array_like(z, x0))).flatten()
+    x = x0.flatten()
+
+    dx = np.full_like(x, np.inf)
+    Fx = func(x)
+    Fx_norm = norm(Fx)
+
+    jacobian = asjacobian(jacobian)
+    jacobian.setup(x.copy(), Fx, func)
+
+    if maxiter is None:
+        if iter is not None:
+            maxiter = iter + 1
+        else:
+            maxiter = 100*(x.size+1)
+
+    if line_search is True:
+        line_search = 'armijo'
+    elif line_search is False:
+        line_search = None
+
+    if line_search not in (None, 'armijo', 'wolfe'):
+        raise ValueError("Invalid line search")
+
+    # Solver tolerance selection
+    gamma = 0.9
+    eta_max = 0.9999
+    eta_treshold = 0.1
+    eta = 1e-3
+
+    for n in range(maxiter):
+        status = condition.check(Fx, x, dx)
+        if status:
+            break
+
+        # The tolerance, as computed for scipy.sparse.linalg.* routines
+        tol = min(eta, eta*Fx_norm)
+        dx = -jacobian.solve(Fx, tol=tol)
+
+        if norm(dx) == 0:
+            raise ValueError("Jacobian inversion yielded zero vector. "
+                             "This indicates a bug in the Jacobian "
+                             "approximation.")
+
+        # Line search, or Newton step
+        if line_search:
+            s, x, Fx, Fx_norm_new = _nonlin_line_search(func, x, Fx, dx,
+                                                        line_search)
+        else:
+            s = 1.0
+            x = x + dx
+            Fx = func(x)
+            Fx_norm_new = norm(Fx)
+
+        jacobian.update(x.copy(), Fx)
+
+        if callback:
+            callback(x, Fx)
+
+        # Adjust forcing parameters for inexact methods
+        eta_A = gamma * Fx_norm_new**2 / Fx_norm**2
+        if gamma * eta**2 < eta_treshold:
+            eta = min(eta_max, eta_A)
+        else:
+            eta = min(eta_max, max(eta_A, gamma*eta**2))
+
+        Fx_norm = Fx_norm_new
+
+        # Print status
+        if verbose:
+            sys.stdout.write("%d:  |F(x)| = %g; step %g\n" % (
+                n, tol_norm(Fx), s))
+            sys.stdout.flush()
+    else:
+        if raise_exception:
+            raise NoConvergence(_array_like(x, x0))
+        else:
+            status = 2
+
+    if full_output:
+        info = {'nit': condition.iteration,
+                'fun': Fx,
+                'status': status,
+                'success': status == 1,
+                'message': {1: 'A solution was found at the specified '
+                               'tolerance.',
+                            2: 'The maximum number of iterations allowed '
+                               'has been reached.'
+                            }[status]
+                }
+        return _array_like(x, x0), info
+    else:
+        return _array_like(x, x0)
+
+
+_set_doc(nonlin_solve)
+
+
+def _nonlin_line_search(func, x, Fx, dx, search_type='armijo', rdiff=1e-8,
+                        smin=1e-2):
+    tmp_s = [0]
+    tmp_Fx = [Fx]
+    tmp_phi = [norm(Fx)**2]
+    s_norm = norm(x) / norm(dx)
+
+    def phi(s, store=True):
+        if s == tmp_s[0]:
+            return tmp_phi[0]
+        xt = x + s*dx
+        v = func(xt)
+        p = _safe_norm(v)**2
+        if store:
+            tmp_s[0] = s
+            tmp_phi[0] = p
+            tmp_Fx[0] = v
+        return p
+
+    def derphi(s):
+        ds = (abs(s) + s_norm + 1) * rdiff
+        return (phi(s+ds, store=False) - phi(s)) / ds
+
+    if search_type == 'wolfe':
+        s, phi1, phi0 = scalar_search_wolfe1(phi, derphi, tmp_phi[0],
+                                             xtol=1e-2, amin=smin)
+    elif search_type == 'armijo':
+        s, phi1 = scalar_search_armijo(phi, tmp_phi[0], -tmp_phi[0],
+                                       amin=smin)
+
+    if s is None:
+        # XXX: No suitable step length found. Take the full Newton step,
+        #      and hope for the best.
+        s = 1.0
+
+    x = x + s*dx
+    if s == tmp_s[0]:
+        Fx = tmp_Fx[0]
+    else:
+        Fx = func(x)
+    Fx_norm = norm(Fx)
+
+    return s, x, Fx, Fx_norm
+
+
+class TerminationCondition:
+    """
+    Termination condition for an iteration. It is terminated if
+
+    - |F| < f_rtol*|F_0|, AND
+    - |F| < f_tol
+
+    AND
+
+    - |dx| < x_rtol*|x|, AND
+    - |dx| < x_tol
+
+    """
+    def __init__(self, f_tol=None, f_rtol=None, x_tol=None, x_rtol=None,
+                 iter=None, norm=maxnorm):
+
+        if f_tol is None:
+            f_tol = np.finfo(np.float64).eps ** (1./3)
+        if f_rtol is None:
+            f_rtol = np.inf
+        if x_tol is None:
+            x_tol = np.inf
+        if x_rtol is None:
+            x_rtol = np.inf
+
+        self.x_tol = x_tol
+        self.x_rtol = x_rtol
+        self.f_tol = f_tol
+        self.f_rtol = f_rtol
+
+        self.norm = norm
+
+        self.iter = iter
+
+        self.f0_norm = None
+        self.iteration = 0
+
+    def check(self, f, x, dx):
+        self.iteration += 1
+        f_norm = self.norm(f)
+        x_norm = self.norm(x)
+        dx_norm = self.norm(dx)
+
+        if self.f0_norm is None:
+            self.f0_norm = f_norm
+
+        if f_norm == 0:
+            return 1
+
+        if self.iter is not None:
+            # backwards compatibility with SciPy 0.6.0
+            return 2 * (self.iteration > self.iter)
+
+        # NB: condition must succeed for rtol=inf even if norm == 0
+        return int((f_norm <= self.f_tol
+                    and f_norm/self.f_rtol <= self.f0_norm)
+                   and (dx_norm <= self.x_tol
+                        and dx_norm/self.x_rtol <= x_norm))
+
+
+#------------------------------------------------------------------------------
+# Generic Jacobian approximation
+#------------------------------------------------------------------------------
+
+class Jacobian:
+    """
+    Common interface for Jacobians or Jacobian approximations.
+
+    The optional methods come useful when implementing trust region
+    etc., algorithms that often require evaluating transposes of the
+    Jacobian.
+
+    Methods
+    -------
+    solve
+        Returns J^-1 * v
+    update
+        Updates Jacobian to point `x` (where the function has residual `Fx`)
+
+    matvec : optional
+        Returns J * v
+    rmatvec : optional
+        Returns A^H * v
+    rsolve : optional
+        Returns A^-H * v
+    matmat : optional
+        Returns A * V, where V is a dense matrix with dimensions (N,K).
+    todense : optional
+        Form the dense Jacobian matrix. Necessary for dense trust region
+        algorithms, and useful for testing.
+
+    Attributes
+    ----------
+    shape
+        Matrix dimensions (M, N)
+    dtype
+        Data type of the matrix.
+    func : callable, optional
+        Function the Jacobian corresponds to
+
+    """
+
+    def __init__(self, **kw):
+        names = ["solve", "update", "matvec", "rmatvec", "rsolve",
+                 "matmat", "todense", "shape", "dtype"]
+        for name, value in kw.items():
+            if name not in names:
+                raise ValueError("Unknown keyword argument %s" % name)
+            if value is not None:
+                setattr(self, name, kw[name])
+
+
+        if hasattr(self, "todense"):
+            def __array__(self, dtype=None, copy=None):
+                if dtype is not None:
+                    raise ValueError(f"`dtype` must be None, was {dtype}")
+                return self.todense()
+
+    def aspreconditioner(self):
+        return InverseJacobian(self)
+
+    def solve(self, v, tol=0):
+        raise NotImplementedError
+
+    def update(self, x, F):
+        pass
+
+    def setup(self, x, F, func):
+        self.func = func
+        self.shape = (F.size, x.size)
+        self.dtype = F.dtype
+        if self.__class__.setup is Jacobian.setup:
+            # Call on the first point unless overridden
+            self.update(x, F)
+
+
+class InverseJacobian:
+    def __init__(self, jacobian):
+        self.jacobian = jacobian
+        self.matvec = jacobian.solve
+        self.update = jacobian.update
+        if hasattr(jacobian, 'setup'):
+            self.setup = jacobian.setup
+        if hasattr(jacobian, 'rsolve'):
+            self.rmatvec = jacobian.rsolve
+
+    @property
+    def shape(self):
+        return self.jacobian.shape
+
+    @property
+    def dtype(self):
+        return self.jacobian.dtype
+
+
+def asjacobian(J):
+    """
+    Convert given object to one suitable for use as a Jacobian.
+    """
+    spsolve = scipy.sparse.linalg.spsolve
+    if isinstance(J, Jacobian):
+        return J
+    elif inspect.isclass(J) and issubclass(J, Jacobian):
+        return J()
+    elif isinstance(J, np.ndarray):
+        if J.ndim > 2:
+            raise ValueError('array must have rank <= 2')
+        J = np.atleast_2d(np.asarray(J))
+        if J.shape[0] != J.shape[1]:
+            raise ValueError('array must be square')
+
+        return Jacobian(matvec=lambda v: dot(J, v),
+                        rmatvec=lambda v: dot(J.conj().T, v),
+                        solve=lambda v, tol=0: solve(J, v),
+                        rsolve=lambda v, tol=0: solve(J.conj().T, v),
+                        dtype=J.dtype, shape=J.shape)
+    elif scipy.sparse.issparse(J):
+        if J.shape[0] != J.shape[1]:
+            raise ValueError('matrix must be square')
+        return Jacobian(matvec=lambda v: J @ v,
+                        rmatvec=lambda v: J.conj().T @ v,
+                        solve=lambda v, tol=0: spsolve(J, v),
+                        rsolve=lambda v, tol=0: spsolve(J.conj().T, v),
+                        dtype=J.dtype, shape=J.shape)
+    elif hasattr(J, 'shape') and hasattr(J, 'dtype') and hasattr(J, 'solve'):
+        return Jacobian(matvec=getattr(J, 'matvec'),
+                        rmatvec=getattr(J, 'rmatvec'),
+                        solve=J.solve,
+                        rsolve=getattr(J, 'rsolve'),
+                        update=getattr(J, 'update'),
+                        setup=getattr(J, 'setup'),
+                        dtype=J.dtype,
+                        shape=J.shape)
+    elif callable(J):
+        # Assume it's a function J(x) that returns the Jacobian
+        class Jac(Jacobian):
+            def update(self, x, F):
+                self.x = x
+
+            def solve(self, v, tol=0):
+                m = J(self.x)
+                if isinstance(m, np.ndarray):
+                    return solve(m, v)
+                elif scipy.sparse.issparse(m):
+                    return spsolve(m, v)
+                else:
+                    raise ValueError("Unknown matrix type")
+
+            def matvec(self, v):
+                m = J(self.x)
+                if isinstance(m, np.ndarray):
+                    return dot(m, v)
+                elif scipy.sparse.issparse(m):
+                    return m @ v
+                else:
+                    raise ValueError("Unknown matrix type")
+
+            def rsolve(self, v, tol=0):
+                m = J(self.x)
+                if isinstance(m, np.ndarray):
+                    return solve(m.conj().T, v)
+                elif scipy.sparse.issparse(m):
+                    return spsolve(m.conj().T, v)
+                else:
+                    raise ValueError("Unknown matrix type")
+
+            def rmatvec(self, v):
+                m = J(self.x)
+                if isinstance(m, np.ndarray):
+                    return dot(m.conj().T, v)
+                elif scipy.sparse.issparse(m):
+                    return m.conj().T @ v
+                else:
+                    raise ValueError("Unknown matrix type")
+        return Jac()
+    elif isinstance(J, str):
+        return dict(broyden1=BroydenFirst,
+                    broyden2=BroydenSecond,
+                    anderson=Anderson,
+                    diagbroyden=DiagBroyden,
+                    linearmixing=LinearMixing,
+                    excitingmixing=ExcitingMixing,
+                    krylov=KrylovJacobian)[J]()
+    else:
+        raise TypeError('Cannot convert object to a Jacobian')
+
+
+#------------------------------------------------------------------------------
+# Broyden
+#------------------------------------------------------------------------------
+
+class GenericBroyden(Jacobian):
+    def setup(self, x0, f0, func):
+        Jacobian.setup(self, x0, f0, func)
+        self.last_f = f0
+        self.last_x = x0
+
+        if hasattr(self, 'alpha') and self.alpha is None:
+            # Autoscale the initial Jacobian parameter
+            # unless we have already guessed the solution.
+            normf0 = norm(f0)
+            if normf0:
+                self.alpha = 0.5*max(norm(x0), 1) / normf0
+            else:
+                self.alpha = 1.0
+
+    def _update(self, x, f, dx, df, dx_norm, df_norm):
+        raise NotImplementedError
+
+    def update(self, x, f):
+        df = f - self.last_f
+        dx = x - self.last_x
+        self._update(x, f, dx, df, norm(dx), norm(df))
+        self.last_f = f
+        self.last_x = x
+
+
+class LowRankMatrix:
+    r"""
+    A matrix represented as
+
+    .. math:: \alpha I + \sum_{n=0}^{n=M} c_n d_n^\dagger
+
+    However, if the rank of the matrix reaches the dimension of the vectors,
+    full matrix representation will be used thereon.
+
+    """
+
+    def __init__(self, alpha, n, dtype):
+        self.alpha = alpha
+        self.cs = []
+        self.ds = []
+        self.n = n
+        self.dtype = dtype
+        self.collapsed = None
+
+    @staticmethod
+    def _matvec(v, alpha, cs, ds):
+        axpy, scal, dotc = get_blas_funcs(['axpy', 'scal', 'dotc'],
+                                          cs[:1] + [v])
+        w = alpha * v
+        for c, d in zip(cs, ds):
+            a = dotc(d, v)
+            w = axpy(c, w, w.size, a)
+        return w
+
+    @staticmethod
+    def _solve(v, alpha, cs, ds):
+        """Evaluate w = M^-1 v"""
+        if len(cs) == 0:
+            return v/alpha
+
+        # (B + C D^H)^-1 = B^-1 - B^-1 C (I + D^H B^-1 C)^-1 D^H B^-1
+
+        axpy, dotc = get_blas_funcs(['axpy', 'dotc'], cs[:1] + [v])
+
+        c0 = cs[0]
+        A = alpha * np.identity(len(cs), dtype=c0.dtype)
+        for i, d in enumerate(ds):
+            for j, c in enumerate(cs):
+                A[i,j] += dotc(d, c)
+
+        q = np.zeros(len(cs), dtype=c0.dtype)
+        for j, d in enumerate(ds):
+            q[j] = dotc(d, v)
+        q /= alpha
+        q = solve(A, q)
+
+        w = v/alpha
+        for c, qc in zip(cs, q):
+            w = axpy(c, w, w.size, -qc)
+
+        return w
+
+    def matvec(self, v):
+        """Evaluate w = M v"""
+        if self.collapsed is not None:
+            return np.dot(self.collapsed, v)
+        return LowRankMatrix._matvec(v, self.alpha, self.cs, self.ds)
+
+    def rmatvec(self, v):
+        """Evaluate w = M^H v"""
+        if self.collapsed is not None:
+            return np.dot(self.collapsed.T.conj(), v)
+        return LowRankMatrix._matvec(v, np.conj(self.alpha), self.ds, self.cs)
+
+    def solve(self, v, tol=0):
+        """Evaluate w = M^-1 v"""
+        if self.collapsed is not None:
+            return solve(self.collapsed, v)
+        return LowRankMatrix._solve(v, self.alpha, self.cs, self.ds)
+
+    def rsolve(self, v, tol=0):
+        """Evaluate w = M^-H v"""
+        if self.collapsed is not None:
+            return solve(self.collapsed.T.conj(), v)
+        return LowRankMatrix._solve(v, np.conj(self.alpha), self.ds, self.cs)
+
+    def append(self, c, d):
+        if self.collapsed is not None:
+            self.collapsed += c[:,None] * d[None,:].conj()
+            return
+
+        self.cs.append(c)
+        self.ds.append(d)
+
+        if len(self.cs) > c.size:
+            self.collapse()
+
+    def __array__(self, dtype=None, copy=None):
+        if dtype is not None:
+            warnings.warn("LowRankMatrix is scipy-internal code, `dtype` "
+                          f"should only be None but was {dtype} (not handled)",
+                          stacklevel=3)
+        if copy is not None:
+            warnings.warn("LowRankMatrix is scipy-internal code, `copy` "
+                          f"should only be None but was {copy} (not handled)",
+                          stacklevel=3)
+        if self.collapsed is not None:
+            return self.collapsed
+
+        Gm = self.alpha*np.identity(self.n, dtype=self.dtype)
+        for c, d in zip(self.cs, self.ds):
+            Gm += c[:,None]*d[None,:].conj()
+        return Gm
+
+    def collapse(self):
+        """Collapse the low-rank matrix to a full-rank one."""
+        self.collapsed = np.array(self)
+        self.cs = None
+        self.ds = None
+        self.alpha = None
+
+    def restart_reduce(self, rank):
+        """
+        Reduce the rank of the matrix by dropping all vectors.
+        """
+        if self.collapsed is not None:
+            return
+        assert rank > 0
+        if len(self.cs) > rank:
+            del self.cs[:]
+            del self.ds[:]
+
+    def simple_reduce(self, rank):
+        """
+        Reduce the rank of the matrix by dropping oldest vectors.
+        """
+        if self.collapsed is not None:
+            return
+        assert rank > 0
+        while len(self.cs) > rank:
+            del self.cs[0]
+            del self.ds[0]
+
+    def svd_reduce(self, max_rank, to_retain=None):
+        """
+        Reduce the rank of the matrix by retaining some SVD components.
+
+        This corresponds to the \"Broyden Rank Reduction Inverse\"
+        algorithm described in [1]_.
+
+        Note that the SVD decomposition can be done by solving only a
+        problem whose size is the effective rank of this matrix, which
+        is viable even for large problems.
+
+        Parameters
+        ----------
+        max_rank : int
+            Maximum rank of this matrix after reduction.
+        to_retain : int, optional
+            Number of SVD components to retain when reduction is done
+            (ie. rank > max_rank). Default is ``max_rank - 2``.
+
+        References
+        ----------
+        .. [1] B.A. van der Rotten, PhD thesis,
+           \"A limited memory Broyden method to solve high-dimensional
+           systems of nonlinear equations\". Mathematisch Instituut,
+           Universiteit Leiden, The Netherlands (2003).
+
+           https://web.archive.org/web/20161022015821/http://www.math.leidenuniv.nl/scripties/Rotten.pdf
+
+        """
+        if self.collapsed is not None:
+            return
+
+        p = max_rank
+        if to_retain is not None:
+            q = to_retain
+        else:
+            q = p - 2
+
+        if self.cs:
+            p = min(p, len(self.cs[0]))
+        q = max(0, min(q, p-1))
+
+        m = len(self.cs)
+        if m < p:
+            # nothing to do
+            return
+
+        C = np.array(self.cs).T
+        D = np.array(self.ds).T
+
+        D, R = qr(D, mode='economic')
+        C = dot(C, R.T.conj())
+
+        U, S, WH = svd(C, full_matrices=False)
+
+        C = dot(C, inv(WH))
+        D = dot(D, WH.T.conj())
+
+        for k in range(q):
+            self.cs[k] = C[:,k].copy()
+            self.ds[k] = D[:,k].copy()
+
+        del self.cs[q:]
+        del self.ds[q:]
+
+
+_doc_parts['broyden_params'] = """
+    alpha : float, optional
+        Initial guess for the Jacobian is ``(-1/alpha)``.
+    reduction_method : str or tuple, optional
+        Method used in ensuring that the rank of the Broyden matrix
+        stays low. Can either be a string giving the name of the method,
+        or a tuple of the form ``(method, param1, param2, ...)``
+        that gives the name of the method and values for additional parameters.
+
+        Methods available:
+
+            - ``restart``: drop all matrix columns. Has no extra parameters.
+            - ``simple``: drop oldest matrix column. Has no extra parameters.
+            - ``svd``: keep only the most significant SVD components.
+              Takes an extra parameter, ``to_retain``, which determines the
+              number of SVD components to retain when rank reduction is done.
+              Default is ``max_rank - 2``.
+
+    max_rank : int, optional
+        Maximum rank for the Broyden matrix.
+        Default is infinity (i.e., no rank reduction).
+    """.strip()
+
+
+class BroydenFirst(GenericBroyden):
+    r"""
+    Find a root of a function, using Broyden's first Jacobian approximation.
+
+    This method is also known as \"Broyden's good method\".
+
+    Parameters
+    ----------
+    %(params_basic)s
+    %(broyden_params)s
+    %(params_extra)s
+
+    See Also
+    --------
+    root : Interface to root finding algorithms for multivariate
+           functions. See ``method='broyden1'`` in particular.
+
+    Notes
+    -----
+    This algorithm implements the inverse Jacobian Quasi-Newton update
+
+    .. math:: H_+ = H + (dx - H df) dx^\dagger H / ( dx^\dagger H df)
+
+    which corresponds to Broyden's first Jacobian update
+
+    .. math:: J_+ = J + (df - J dx) dx^\dagger / dx^\dagger dx
+
+
+    References
+    ----------
+    .. [1] B.A. van der Rotten, PhD thesis,
+       \"A limited memory Broyden method to solve high-dimensional
+       systems of nonlinear equations\". Mathematisch Instituut,
+       Universiteit Leiden, The Netherlands (2003).
+
+       https://web.archive.org/web/20161022015821/http://www.math.leidenuniv.nl/scripties/Rotten.pdf
+
+    Examples
+    --------
+    The following functions define a system of nonlinear equations
+
+    >>> def fun(x):
+    ...     return [x[0]  + 0.5 * (x[0] - x[1])**3 - 1.0,
+    ...             0.5 * (x[1] - x[0])**3 + x[1]]
+
+    A solution can be obtained as follows.
+
+    >>> from scipy import optimize
+    >>> sol = optimize.broyden1(fun, [0, 0])
+    >>> sol
+    array([0.84116396, 0.15883641])
+
+    """
+
+    def __init__(self, alpha=None, reduction_method='restart', max_rank=None):
+        GenericBroyden.__init__(self)
+        self.alpha = alpha
+        self.Gm = None
+
+        if max_rank is None:
+            max_rank = np.inf
+        self.max_rank = max_rank
+
+        if isinstance(reduction_method, str):
+            reduce_params = ()
+        else:
+            reduce_params = reduction_method[1:]
+            reduction_method = reduction_method[0]
+        reduce_params = (max_rank - 1,) + reduce_params
+
+        if reduction_method == 'svd':
+            self._reduce = lambda: self.Gm.svd_reduce(*reduce_params)
+        elif reduction_method == 'simple':
+            self._reduce = lambda: self.Gm.simple_reduce(*reduce_params)
+        elif reduction_method == 'restart':
+            self._reduce = lambda: self.Gm.restart_reduce(*reduce_params)
+        else:
+            raise ValueError("Unknown rank reduction method '%s'" %
+                             reduction_method)
+
+    def setup(self, x, F, func):
+        GenericBroyden.setup(self, x, F, func)
+        self.Gm = LowRankMatrix(-self.alpha, self.shape[0], self.dtype)
+
+    def todense(self):
+        return inv(self.Gm)
+
+    def solve(self, f, tol=0):
+        r = self.Gm.matvec(f)
+        if not np.isfinite(r).all():
+            # singular; reset the Jacobian approximation
+            self.setup(self.last_x, self.last_f, self.func)
+            return self.Gm.matvec(f)
+        return r
+
+    def matvec(self, f):
+        return self.Gm.solve(f)
+
+    def rsolve(self, f, tol=0):
+        return self.Gm.rmatvec(f)
+
+    def rmatvec(self, f):
+        return self.Gm.rsolve(f)
+
+    def _update(self, x, f, dx, df, dx_norm, df_norm):
+        self._reduce()  # reduce first to preserve secant condition
+
+        v = self.Gm.rmatvec(dx)
+        c = dx - self.Gm.matvec(df)
+        d = v / vdot(df, v)
+
+        self.Gm.append(c, d)
+
+
+class BroydenSecond(BroydenFirst):
+    """
+    Find a root of a function, using Broyden\'s second Jacobian approximation.
+
+    This method is also known as \"Broyden's bad method\".
+
+    Parameters
+    ----------
+    %(params_basic)s
+    %(broyden_params)s
+    %(params_extra)s
+
+    See Also
+    --------
+    root : Interface to root finding algorithms for multivariate
+           functions. See ``method='broyden2'`` in particular.
+
+    Notes
+    -----
+    This algorithm implements the inverse Jacobian Quasi-Newton update
+
+    .. math:: H_+ = H + (dx - H df) df^\\dagger / ( df^\\dagger df)
+
+    corresponding to Broyden's second method.
+
+    References
+    ----------
+    .. [1] B.A. van der Rotten, PhD thesis,
+       \"A limited memory Broyden method to solve high-dimensional
+       systems of nonlinear equations\". Mathematisch Instituut,
+       Universiteit Leiden, The Netherlands (2003).
+
+       https://web.archive.org/web/20161022015821/http://www.math.leidenuniv.nl/scripties/Rotten.pdf
+
+    Examples
+    --------
+    The following functions define a system of nonlinear equations
+
+    >>> def fun(x):
+    ...     return [x[0]  + 0.5 * (x[0] - x[1])**3 - 1.0,
+    ...             0.5 * (x[1] - x[0])**3 + x[1]]
+
+    A solution can be obtained as follows.
+
+    >>> from scipy import optimize
+    >>> sol = optimize.broyden2(fun, [0, 0])
+    >>> sol
+    array([0.84116365, 0.15883529])
+
+    """
+
+    def _update(self, x, f, dx, df, dx_norm, df_norm):
+        self._reduce()  # reduce first to preserve secant condition
+
+        v = df
+        c = dx - self.Gm.matvec(df)
+        d = v / df_norm**2
+        self.Gm.append(c, d)
+
+
+#------------------------------------------------------------------------------
+# Broyden-like (restricted memory)
+#------------------------------------------------------------------------------
+
+class Anderson(GenericBroyden):
+    """
+    Find a root of a function, using (extended) Anderson mixing.
+
+    The Jacobian is formed by for a 'best' solution in the space
+    spanned by last `M` vectors. As a result, only a MxM matrix
+    inversions and MxN multiplications are required. [Ey]_
+
+    Parameters
+    ----------
+    %(params_basic)s
+    alpha : float, optional
+        Initial guess for the Jacobian is (-1/alpha).
+    M : float, optional
+        Number of previous vectors to retain. Defaults to 5.
+    w0 : float, optional
+        Regularization parameter for numerical stability.
+        Compared to unity, good values of the order of 0.01.
+    %(params_extra)s
+
+    See Also
+    --------
+    root : Interface to root finding algorithms for multivariate
+           functions. See ``method='anderson'`` in particular.
+
+    References
+    ----------
+    .. [Ey] V. Eyert, J. Comp. Phys., 124, 271 (1996).
+
+    Examples
+    --------
+    The following functions define a system of nonlinear equations
+
+    >>> def fun(x):
+    ...     return [x[0]  + 0.5 * (x[0] - x[1])**3 - 1.0,
+    ...             0.5 * (x[1] - x[0])**3 + x[1]]
+
+    A solution can be obtained as follows.
+
+    >>> from scipy import optimize
+    >>> sol = optimize.anderson(fun, [0, 0])
+    >>> sol
+    array([0.84116588, 0.15883789])
+
+    """
+
+    # Note:
+    #
+    # Anderson method maintains a rank M approximation of the inverse Jacobian,
+    #
+    #     J^-1 v ~ -v*alpha + (dX + alpha dF) A^-1 dF^H v
+    #     A      = W + dF^H dF
+    #     W      = w0^2 diag(dF^H dF)
+    #
+    # so that for w0 = 0 the secant condition applies for last M iterates, i.e.,
+    #
+    #     J^-1 df_j = dx_j
+    #
+    # for all j = 0 ... M-1.
+    #
+    # Moreover, (from Sherman-Morrison-Woodbury formula)
+    #
+    #    J v ~ [ b I - b^2 C (I + b dF^H A^-1 C)^-1 dF^H ] v
+    #    C   = (dX + alpha dF) A^-1
+    #    b   = -1/alpha
+    #
+    # and after simplification
+    #
+    #    J v ~ -v/alpha + (dX/alpha + dF) (dF^H dX - alpha W)^-1 dF^H v
+    #
+
+    def __init__(self, alpha=None, w0=0.01, M=5):
+        GenericBroyden.__init__(self)
+        self.alpha = alpha
+        self.M = M
+        self.dx = []
+        self.df = []
+        self.gamma = None
+        self.w0 = w0
+
+    def solve(self, f, tol=0):
+        dx = -self.alpha*f
+
+        n = len(self.dx)
+        if n == 0:
+            return dx
+
+        df_f = np.empty(n, dtype=f.dtype)
+        for k in range(n):
+            df_f[k] = vdot(self.df[k], f)
+
+        try:
+            gamma = solve(self.a, df_f)
+        except LinAlgError:
+            # singular; reset the Jacobian approximation
+            del self.dx[:]
+            del self.df[:]
+            return dx
+
+        for m in range(n):
+            dx += gamma[m]*(self.dx[m] + self.alpha*self.df[m])
+        return dx
+
+    def matvec(self, f):
+        dx = -f/self.alpha
+
+        n = len(self.dx)
+        if n == 0:
+            return dx
+
+        df_f = np.empty(n, dtype=f.dtype)
+        for k in range(n):
+            df_f[k] = vdot(self.df[k], f)
+
+        b = np.empty((n, n), dtype=f.dtype)
+        for i in range(n):
+            for j in range(n):
+                b[i,j] = vdot(self.df[i], self.dx[j])
+                if i == j and self.w0 != 0:
+                    b[i,j] -= vdot(self.df[i], self.df[i])*self.w0**2*self.alpha
+        gamma = solve(b, df_f)
+
+        for m in range(n):
+            dx += gamma[m]*(self.df[m] + self.dx[m]/self.alpha)
+        return dx
+
+    def _update(self, x, f, dx, df, dx_norm, df_norm):
+        if self.M == 0:
+            return
+
+        self.dx.append(dx)
+        self.df.append(df)
+
+        while len(self.dx) > self.M:
+            self.dx.pop(0)
+            self.df.pop(0)
+
+        n = len(self.dx)
+        a = np.zeros((n, n), dtype=f.dtype)
+
+        for i in range(n):
+            for j in range(i, n):
+                if i == j:
+                    wd = self.w0**2
+                else:
+                    wd = 0
+                a[i,j] = (1+wd)*vdot(self.df[i], self.df[j])
+
+        a += np.triu(a, 1).T.conj()
+        self.a = a
+
+#------------------------------------------------------------------------------
+# Simple iterations
+#------------------------------------------------------------------------------
+
+
+class DiagBroyden(GenericBroyden):
+    """
+    Find a root of a function, using diagonal Broyden Jacobian approximation.
+
+    The Jacobian approximation is derived from previous iterations, by
+    retaining only the diagonal of Broyden matrices.
+
+    .. warning::
+
+       This algorithm may be useful for specific problems, but whether
+       it will work may depend strongly on the problem.
+
+    Parameters
+    ----------
+    %(params_basic)s
+    alpha : float, optional
+        Initial guess for the Jacobian is (-1/alpha).
+    %(params_extra)s
+
+    See Also
+    --------
+    root : Interface to root finding algorithms for multivariate
+           functions. See ``method='diagbroyden'`` in particular.
+
+    Examples
+    --------
+    The following functions define a system of nonlinear equations
+
+    >>> def fun(x):
+    ...     return [x[0]  + 0.5 * (x[0] - x[1])**3 - 1.0,
+    ...             0.5 * (x[1] - x[0])**3 + x[1]]
+
+    A solution can be obtained as follows.
+
+    >>> from scipy import optimize
+    >>> sol = optimize.diagbroyden(fun, [0, 0])
+    >>> sol
+    array([0.84116403, 0.15883384])
+
+    """
+
+    def __init__(self, alpha=None):
+        GenericBroyden.__init__(self)
+        self.alpha = alpha
+
+    def setup(self, x, F, func):
+        GenericBroyden.setup(self, x, F, func)
+        self.d = np.full((self.shape[0],), 1 / self.alpha, dtype=self.dtype)
+
+    def solve(self, f, tol=0):
+        return -f / self.d
+
+    def matvec(self, f):
+        return -f * self.d
+
+    def rsolve(self, f, tol=0):
+        return -f / self.d.conj()
+
+    def rmatvec(self, f):
+        return -f * self.d.conj()
+
+    def todense(self):
+        return np.diag(-self.d)
+
+    def _update(self, x, f, dx, df, dx_norm, df_norm):
+        self.d -= (df + self.d*dx)*dx/dx_norm**2
+
+
+class LinearMixing(GenericBroyden):
+    """
+    Find a root of a function, using a scalar Jacobian approximation.
+
+    .. warning::
+
+       This algorithm may be useful for specific problems, but whether
+       it will work may depend strongly on the problem.
+
+    Parameters
+    ----------
+    %(params_basic)s
+    alpha : float, optional
+        The Jacobian approximation is (-1/alpha).
+    %(params_extra)s
+
+    See Also
+    --------
+    root : Interface to root finding algorithms for multivariate
+           functions. See ``method='linearmixing'`` in particular.
+
+    """
+
+    def __init__(self, alpha=None):
+        GenericBroyden.__init__(self)
+        self.alpha = alpha
+
+    def solve(self, f, tol=0):
+        return -f*self.alpha
+
+    def matvec(self, f):
+        return -f/self.alpha
+
+    def rsolve(self, f, tol=0):
+        return -f*np.conj(self.alpha)
+
+    def rmatvec(self, f):
+        return -f/np.conj(self.alpha)
+
+    def todense(self):
+        return np.diag(np.full(self.shape[0], -1/self.alpha))
+
+    def _update(self, x, f, dx, df, dx_norm, df_norm):
+        pass
+
+
+class ExcitingMixing(GenericBroyden):
+    """
+    Find a root of a function, using a tuned diagonal Jacobian approximation.
+
+    The Jacobian matrix is diagonal and is tuned on each iteration.
+
+    .. warning::
+
+       This algorithm may be useful for specific problems, but whether
+       it will work may depend strongly on the problem.
+
+    See Also
+    --------
+    root : Interface to root finding algorithms for multivariate
+           functions. See ``method='excitingmixing'`` in particular.
+
+    Parameters
+    ----------
+    %(params_basic)s
+    alpha : float, optional
+        Initial Jacobian approximation is (-1/alpha).
+    alphamax : float, optional
+        The entries of the diagonal Jacobian are kept in the range
+        ``[alpha, alphamax]``.
+    %(params_extra)s
+    """
+
+    def __init__(self, alpha=None, alphamax=1.0):
+        GenericBroyden.__init__(self)
+        self.alpha = alpha
+        self.alphamax = alphamax
+        self.beta = None
+
+    def setup(self, x, F, func):
+        GenericBroyden.setup(self, x, F, func)
+        self.beta = np.full((self.shape[0],), self.alpha, dtype=self.dtype)
+
+    def solve(self, f, tol=0):
+        return -f*self.beta
+
+    def matvec(self, f):
+        return -f/self.beta
+
+    def rsolve(self, f, tol=0):
+        return -f*self.beta.conj()
+
+    def rmatvec(self, f):
+        return -f/self.beta.conj()
+
+    def todense(self):
+        return np.diag(-1/self.beta)
+
+    def _update(self, x, f, dx, df, dx_norm, df_norm):
+        incr = f*self.last_f > 0
+        self.beta[incr] += self.alpha
+        self.beta[~incr] = self.alpha
+        np.clip(self.beta, 0, self.alphamax, out=self.beta)
+
+
+#------------------------------------------------------------------------------
+# Iterative/Krylov approximated Jacobians
+#------------------------------------------------------------------------------
+
+class KrylovJacobian(Jacobian):
+    r"""
+    Find a root of a function, using Krylov approximation for inverse Jacobian.
+
+    This method is suitable for solving large-scale problems.
+
+    Parameters
+    ----------
+    %(params_basic)s
+    rdiff : float, optional
+        Relative step size to use in numerical differentiation.
+    method : str or callable, optional
+        Krylov method to use to approximate the Jacobian.  Can be a string,
+        or a function implementing the same interface as the iterative
+        solvers in `scipy.sparse.linalg`. If a string, needs to be one of:
+        ``'lgmres'``, ``'gmres'``, ``'bicgstab'``, ``'cgs'``, ``'minres'``,
+        ``'tfqmr'``.
+
+        The default is `scipy.sparse.linalg.lgmres`.
+    inner_maxiter : int, optional
+        Parameter to pass to the "inner" Krylov solver: maximum number of
+        iterations. Iteration will stop after maxiter steps even if the
+        specified tolerance has not been achieved.
+    inner_M : LinearOperator or InverseJacobian
+        Preconditioner for the inner Krylov iteration.
+        Note that you can use also inverse Jacobians as (adaptive)
+        preconditioners. For example,
+
+        >>> from scipy.optimize import BroydenFirst, KrylovJacobian
+        >>> from scipy.optimize import InverseJacobian
+        >>> jac = BroydenFirst()
+        >>> kjac = KrylovJacobian(inner_M=InverseJacobian(jac))
+
+        If the preconditioner has a method named 'update', it will be called
+        as ``update(x, f)`` after each nonlinear step, with ``x`` giving
+        the current point, and ``f`` the current function value.
+    outer_k : int, optional
+        Size of the subspace kept across LGMRES nonlinear iterations.
+        See `scipy.sparse.linalg.lgmres` for details.
+    inner_kwargs : kwargs
+        Keyword parameters for the "inner" Krylov solver
+        (defined with `method`). Parameter names must start with
+        the `inner_` prefix which will be stripped before passing on
+        the inner method. See, e.g., `scipy.sparse.linalg.gmres` for details.
+    %(params_extra)s
+
+    See Also
+    --------
+    root : Interface to root finding algorithms for multivariate
+           functions. See ``method='krylov'`` in particular.
+    scipy.sparse.linalg.gmres
+    scipy.sparse.linalg.lgmres
+
+    Notes
+    -----
+    This function implements a Newton-Krylov solver. The basic idea is
+    to compute the inverse of the Jacobian with an iterative Krylov
+    method. These methods require only evaluating the Jacobian-vector
+    products, which are conveniently approximated by a finite difference:
+
+    .. math:: J v \approx (f(x + \omega*v/|v|) - f(x)) / \omega
+
+    Due to the use of iterative matrix inverses, these methods can
+    deal with large nonlinear problems.
+
+    SciPy's `scipy.sparse.linalg` module offers a selection of Krylov
+    solvers to choose from. The default here is `lgmres`, which is a
+    variant of restarted GMRES iteration that reuses some of the
+    information obtained in the previous Newton steps to invert
+    Jacobians in subsequent steps.
+
+    For a review on Newton-Krylov methods, see for example [1]_,
+    and for the LGMRES sparse inverse method, see [2]_.
+
+    References
+    ----------
+    .. [1] C. T. Kelley, Solving Nonlinear Equations with Newton's Method,
+           SIAM, pp.57-83, 2003.
+           :doi:`10.1137/1.9780898718898.ch3`
+    .. [2] D.A. Knoll and D.E. Keyes, J. Comp. Phys. 193, 357 (2004).
+           :doi:`10.1016/j.jcp.2003.08.010`
+    .. [3] A.H. Baker and E.R. Jessup and T. Manteuffel,
+           SIAM J. Matrix Anal. Appl. 26, 962 (2005).
+           :doi:`10.1137/S0895479803422014`
+
+    Examples
+    --------
+    The following functions define a system of nonlinear equations
+
+    >>> def fun(x):
+    ...     return [x[0] + 0.5 * x[1] - 1.0,
+    ...             0.5 * (x[1] - x[0]) ** 2]
+
+    A solution can be obtained as follows.
+
+    >>> from scipy import optimize
+    >>> sol = optimize.newton_krylov(fun, [0, 0])
+    >>> sol
+    array([0.66731771, 0.66536458])
+
+    """
+
+    def __init__(self, rdiff=None, method='lgmres', inner_maxiter=20,
+                 inner_M=None, outer_k=10, **kw):
+        self.preconditioner = inner_M
+        self.rdiff = rdiff
+        # Note that this retrieves one of the named functions, or otherwise
+        # uses `method` as is (i.e., for a user-provided callable).
+        self.method = dict(
+            bicgstab=scipy.sparse.linalg.bicgstab,
+            gmres=scipy.sparse.linalg.gmres,
+            lgmres=scipy.sparse.linalg.lgmres,
+            cgs=scipy.sparse.linalg.cgs,
+            minres=scipy.sparse.linalg.minres,
+            tfqmr=scipy.sparse.linalg.tfqmr,
+            ).get(method, method)
+
+        self.method_kw = dict(maxiter=inner_maxiter, M=self.preconditioner)
+
+        if self.method is scipy.sparse.linalg.gmres:
+            # Replace GMRES's outer iteration with Newton steps
+            self.method_kw['restart'] = inner_maxiter
+            self.method_kw['maxiter'] = 1
+            self.method_kw.setdefault('atol', 0)
+        elif self.method in (scipy.sparse.linalg.gcrotmk,
+                             scipy.sparse.linalg.bicgstab,
+                             scipy.sparse.linalg.cgs):
+            self.method_kw.setdefault('atol', 0)
+        elif self.method is scipy.sparse.linalg.lgmres:
+            self.method_kw['outer_k'] = outer_k
+            # Replace LGMRES's outer iteration with Newton steps
+            self.method_kw['maxiter'] = 1
+            # Carry LGMRES's `outer_v` vectors across nonlinear iterations
+            self.method_kw.setdefault('outer_v', [])
+            self.method_kw.setdefault('prepend_outer_v', True)
+            # But don't carry the corresponding Jacobian*v products, in case
+            # the Jacobian changes a lot in the nonlinear step
+            #
+            # XXX: some trust-region inspired ideas might be more efficient...
+            #      See e.g., Brown & Saad. But needs to be implemented separately
+            #      since it's not an inexact Newton method.
+            self.method_kw.setdefault('store_outer_Av', False)
+            self.method_kw.setdefault('atol', 0)
+
+        for key, value in kw.items():
+            if not key.startswith('inner_'):
+                raise ValueError("Unknown parameter %s" % key)
+            self.method_kw[key[6:]] = value
+
+    def _update_diff_step(self):
+        mx = abs(self.x0).max()
+        mf = abs(self.f0).max()
+        self.omega = self.rdiff * max(1, mx) / max(1, mf)
+
+    def matvec(self, v):
+        nv = norm(v)
+        if nv == 0:
+            return 0*v
+        sc = self.omega / nv
+        r = (self.func(self.x0 + sc*v) - self.f0) / sc
+        if not np.all(np.isfinite(r)) and np.all(np.isfinite(v)):
+            raise ValueError('Function returned non-finite results')
+        return r
+
+    def solve(self, rhs, tol=0):
+        if 'rtol' in self.method_kw:
+            sol, info = self.method(self.op, rhs, **self.method_kw)
+        else:
+            sol, info = self.method(self.op, rhs, rtol=tol, **self.method_kw)
+        return sol
+
+    def update(self, x, f):
+        self.x0 = x
+        self.f0 = f
+        self._update_diff_step()
+
+        # Update also the preconditioner, if possible
+        if self.preconditioner is not None:
+            if hasattr(self.preconditioner, 'update'):
+                self.preconditioner.update(x, f)
+
+    def setup(self, x, f, func):
+        Jacobian.setup(self, x, f, func)
+        self.x0 = x
+        self.f0 = f
+        self.op = scipy.sparse.linalg.aslinearoperator(self)
+
+        if self.rdiff is None:
+            self.rdiff = np.finfo(x.dtype).eps ** (1./2)
+
+        self._update_diff_step()
+
+        # Setup also the preconditioner, if possible
+        if self.preconditioner is not None:
+            if hasattr(self.preconditioner, 'setup'):
+                self.preconditioner.setup(x, f, func)
+
+
+#------------------------------------------------------------------------------
+# Wrapper functions
+#------------------------------------------------------------------------------
+
+def _nonlin_wrapper(name, jac):
+    """
+    Construct a solver wrapper with given name and Jacobian approx.
+
+    It inspects the keyword arguments of ``jac.__init__``, and allows to
+    use the same arguments in the wrapper function, in addition to the
+    keyword arguments of `nonlin_solve`
+
+    """
+    signature = _getfullargspec(jac.__init__)
+    args, varargs, varkw, defaults, kwonlyargs, kwdefaults, _ = signature
+    kwargs = list(zip(args[-len(defaults):], defaults))
+    kw_str = ", ".join([f"{k}={v!r}" for k, v in kwargs])
+    if kw_str:
+        kw_str = ", " + kw_str
+    kwkw_str = ", ".join([f"{k}={k}" for k, v in kwargs])
+    if kwkw_str:
+        kwkw_str = kwkw_str + ", "
+    if kwonlyargs:
+        raise ValueError('Unexpected signature %s' % signature)
+
+    # Construct the wrapper function so that its keyword arguments
+    # are visible in pydoc.help etc.
+    wrapper = """
+def %(name)s(F, xin, iter=None %(kw)s, verbose=False, maxiter=None,
+             f_tol=None, f_rtol=None, x_tol=None, x_rtol=None,
+             tol_norm=None, line_search='armijo', callback=None, **kw):
+    jac = %(jac)s(%(kwkw)s **kw)
+    return nonlin_solve(F, xin, jac, iter, verbose, maxiter,
+                        f_tol, f_rtol, x_tol, x_rtol, tol_norm, line_search,
+                        callback)
+"""
+
+    wrapper = wrapper % dict(name=name, kw=kw_str, jac=jac.__name__,
+                             kwkw=kwkw_str)
+    ns = {}
+    ns.update(globals())
+    exec(wrapper, ns)
+    func = ns[name]
+    func.__doc__ = jac.__doc__
+    _set_doc(func)
+    return func
+
+
+broyden1 = _nonlin_wrapper('broyden1', BroydenFirst)
+broyden2 = _nonlin_wrapper('broyden2', BroydenSecond)
+anderson = _nonlin_wrapper('anderson', Anderson)
+linearmixing = _nonlin_wrapper('linearmixing', LinearMixing)
+diagbroyden = _nonlin_wrapper('diagbroyden', DiagBroyden)
+excitingmixing = _nonlin_wrapper('excitingmixing', ExcitingMixing)
+newton_krylov = _nonlin_wrapper('newton_krylov', KrylovJacobian)

env-llmeval/lib/python3.10/site-packages/scipy/optimize/_numdiff.py

@@ -0,0 +1,775 @@
+"""Routines for numerical differentiation."""
+import functools
+import numpy as np
+from numpy.linalg import norm
+
+from scipy.sparse.linalg import LinearOperator
+from ..sparse import issparse, csc_matrix, csr_matrix, coo_matrix, find
+from ._group_columns import group_dense, group_sparse
+from scipy._lib._array_api import atleast_nd, array_namespace
+
+
+def _adjust_scheme_to_bounds(x0, h, num_steps, scheme, lb, ub):
+    """Adjust final difference scheme to the presence of bounds.
+
+    Parameters
+    ----------
+    x0 : ndarray, shape (n,)
+        Point at which we wish to estimate derivative.
+    h : ndarray, shape (n,)
+        Desired absolute finite difference steps.
+    num_steps : int
+        Number of `h` steps in one direction required to implement finite
+        difference scheme. For example, 2 means that we need to evaluate
+        f(x0 + 2 * h) or f(x0 - 2 * h)
+    scheme : {'1-sided', '2-sided'}
+        Whether steps in one or both directions are required. In other
+        words '1-sided' applies to forward and backward schemes, '2-sided'
+        applies to center schemes.
+    lb : ndarray, shape (n,)
+        Lower bounds on independent variables.
+    ub : ndarray, shape (n,)
+        Upper bounds on independent variables.
+
+    Returns
+    -------
+    h_adjusted : ndarray, shape (n,)
+        Adjusted absolute step sizes. Step size decreases only if a sign flip
+        or switching to one-sided scheme doesn't allow to take a full step.
+    use_one_sided : ndarray of bool, shape (n,)
+        Whether to switch to one-sided scheme. Informative only for
+        ``scheme='2-sided'``.
+    """
+    if scheme == '1-sided':
+        use_one_sided = np.ones_like(h, dtype=bool)
+    elif scheme == '2-sided':
+        h = np.abs(h)
+        use_one_sided = np.zeros_like(h, dtype=bool)
+    else:
+        raise ValueError("`scheme` must be '1-sided' or '2-sided'.")
+
+    if np.all((lb == -np.inf) & (ub == np.inf)):
+        return h, use_one_sided
+
+    h_total = h * num_steps
+    h_adjusted = h.copy()
+
+    lower_dist = x0 - lb
+    upper_dist = ub - x0
+
+    if scheme == '1-sided':
+        x = x0 + h_total
+        violated = (x < lb) | (x > ub)
+        fitting = np.abs(h_total) <= np.maximum(lower_dist, upper_dist)
+        h_adjusted[violated & fitting] *= -1
+
+        forward = (upper_dist >= lower_dist) & ~fitting
+        h_adjusted[forward] = upper_dist[forward] / num_steps
+        backward = (upper_dist < lower_dist) & ~fitting
+        h_adjusted[backward] = -lower_dist[backward] / num_steps
+    elif scheme == '2-sided':
+        central = (lower_dist >= h_total) & (upper_dist >= h_total)
+
+        forward = (upper_dist >= lower_dist) & ~central
+        h_adjusted[forward] = np.minimum(
+            h[forward], 0.5 * upper_dist[forward] / num_steps)
+        use_one_sided[forward] = True
+
+        backward = (upper_dist < lower_dist) & ~central
+        h_adjusted[backward] = -np.minimum(
+            h[backward], 0.5 * lower_dist[backward] / num_steps)
+        use_one_sided[backward] = True
+
+        min_dist = np.minimum(upper_dist, lower_dist) / num_steps
+        adjusted_central = (~central & (np.abs(h_adjusted) <= min_dist))
+        h_adjusted[adjusted_central] = min_dist[adjusted_central]
+        use_one_sided[adjusted_central] = False
+
+    return h_adjusted, use_one_sided
+
+
+@functools.lru_cache
+def _eps_for_method(x0_dtype, f0_dtype, method):
+    """
+    Calculates relative EPS step to use for a given data type
+    and numdiff step method.
+
+    Progressively smaller steps are used for larger floating point types.
+
+    Parameters
+    ----------
+    f0_dtype: np.dtype
+        dtype of function evaluation
+
+    x0_dtype: np.dtype
+        dtype of parameter vector
+
+    method: {'2-point', '3-point', 'cs'}
+
+    Returns
+    -------
+    EPS: float
+        relative step size. May be np.float16, np.float32, np.float64
+
+    Notes
+    -----
+    The default relative step will be np.float64. However, if x0 or f0 are
+    smaller floating point types (np.float16, np.float32), then the smallest
+    floating point type is chosen.
+    """
+    # the default EPS value
+    EPS = np.finfo(np.float64).eps
+
+    x0_is_fp = False
+    if np.issubdtype(x0_dtype, np.inexact):
+        # if you're a floating point type then over-ride the default EPS
+        EPS = np.finfo(x0_dtype).eps
+        x0_itemsize = np.dtype(x0_dtype).itemsize
+        x0_is_fp = True
+
+    if np.issubdtype(f0_dtype, np.inexact):
+        f0_itemsize = np.dtype(f0_dtype).itemsize
+        # choose the smallest itemsize between x0 and f0
+        if x0_is_fp and f0_itemsize < x0_itemsize:
+            EPS = np.finfo(f0_dtype).eps
+
+    if method in ["2-point", "cs"]:
+        return EPS**0.5
+    elif method in ["3-point"]:
+        return EPS**(1/3)
+    else:
+        raise RuntimeError("Unknown step method, should be one of "
+                           "{'2-point', '3-point', 'cs'}")
+
+
+def _compute_absolute_step(rel_step, x0, f0, method):
+    """
+    Computes an absolute step from a relative step for finite difference
+    calculation.
+
+    Parameters
+    ----------
+    rel_step: None or array-like
+        Relative step for the finite difference calculation
+    x0 : np.ndarray
+        Parameter vector
+    f0 : np.ndarray or scalar
+    method : {'2-point', '3-point', 'cs'}
+
+    Returns
+    -------
+    h : float
+        The absolute step size
+
+    Notes
+    -----
+    `h` will always be np.float64. However, if `x0` or `f0` are
+    smaller floating point dtypes (e.g. np.float32), then the absolute
+    step size will be calculated from the smallest floating point size.
+    """
+    # this is used instead of np.sign(x0) because we need
+    # sign_x0 to be 1 when x0 == 0.
+    sign_x0 = (x0 >= 0).astype(float) * 2 - 1
+
+    rstep = _eps_for_method(x0.dtype, f0.dtype, method)
+
+    if rel_step is None:
+        abs_step = rstep * sign_x0 * np.maximum(1.0, np.abs(x0))
+    else:
+        # User has requested specific relative steps.
+        # Don't multiply by max(1, abs(x0) because if x0 < 1 then their
+        # requested step is not used.
+        abs_step = rel_step * sign_x0 * np.abs(x0)
+
+        # however we don't want an abs_step of 0, which can happen if
+        # rel_step is 0, or x0 is 0. Instead, substitute a realistic step
+        dx = ((x0 + abs_step) - x0)
+        abs_step = np.where(dx == 0,
+                            rstep * sign_x0 * np.maximum(1.0, np.abs(x0)),
+                            abs_step)
+
+    return abs_step
+
+
+def _prepare_bounds(bounds, x0):
+    """
+    Prepares new-style bounds from a two-tuple specifying the lower and upper
+    limits for values in x0. If a value is not bound then the lower/upper bound
+    will be expected to be -np.inf/np.inf.
+
+    Examples
+    --------
+    >>> _prepare_bounds([(0, 1, 2), (1, 2, np.inf)], [0.5, 1.5, 2.5])
+    (array([0., 1., 2.]), array([ 1.,  2., inf]))
+    """
+    lb, ub = (np.asarray(b, dtype=float) for b in bounds)
+    if lb.ndim == 0:
+        lb = np.resize(lb, x0.shape)
+
+    if ub.ndim == 0:
+        ub = np.resize(ub, x0.shape)
+
+    return lb, ub
+
+
+def group_columns(A, order=0):
+    """Group columns of a 2-D matrix for sparse finite differencing [1]_.
+
+    Two columns are in the same group if in each row at least one of them
+    has zero. A greedy sequential algorithm is used to construct groups.
+
+    Parameters
+    ----------
+    A : array_like or sparse matrix, shape (m, n)
+        Matrix of which to group columns.
+    order : int, iterable of int with shape (n,) or None
+        Permutation array which defines the order of columns enumeration.
+        If int or None, a random permutation is used with `order` used as
+        a random seed. Default is 0, that is use a random permutation but
+        guarantee repeatability.
+
+    Returns
+    -------
+    groups : ndarray of int, shape (n,)
+        Contains values from 0 to n_groups-1, where n_groups is the number
+        of found groups. Each value ``groups[i]`` is an index of a group to
+        which ith column assigned. The procedure was helpful only if
+        n_groups is significantly less than n.
+
+    References
+    ----------
+    .. [1] A. Curtis, M. J. D. Powell, and J. Reid, "On the estimation of
+           sparse Jacobian matrices", Journal of the Institute of Mathematics
+           and its Applications, 13 (1974), pp. 117-120.
+    """
+    if issparse(A):
+        A = csc_matrix(A)
+    else:
+        A = np.atleast_2d(A)
+        A = (A != 0).astype(np.int32)
+
+    if A.ndim != 2:
+        raise ValueError("`A` must be 2-dimensional.")
+
+    m, n = A.shape
+
+    if order is None or np.isscalar(order):
+        rng = np.random.RandomState(order)
+        order = rng.permutation(n)
+    else:
+        order = np.asarray(order)
+        if order.shape != (n,):
+            raise ValueError("`order` has incorrect shape.")
+
+    A = A[:, order]
+
+    if issparse(A):
+        groups = group_sparse(m, n, A.indices, A.indptr)
+    else:
+        groups = group_dense(m, n, A)
+
+    groups[order] = groups.copy()
+
+    return groups
+
+
+def approx_derivative(fun, x0, method='3-point', rel_step=None, abs_step=None,
+                      f0=None, bounds=(-np.inf, np.inf), sparsity=None,
+                      as_linear_operator=False, args=(), kwargs={}):
+    """Compute finite difference approximation of the derivatives of a
+    vector-valued function.
+
+    If a function maps from R^n to R^m, its derivatives form m-by-n matrix
+    called the Jacobian, where an element (i, j) is a partial derivative of
+    f[i] with respect to x[j].
+
+    Parameters
+    ----------
+    fun : callable
+        Function of which to estimate the derivatives. The argument x
+        passed to this function is ndarray of shape (n,) (never a scalar
+        even if n=1). It must return 1-D array_like of shape (m,) or a scalar.
+    x0 : array_like of shape (n,) or float
+        Point at which to estimate the derivatives. Float will be converted
+        to a 1-D array.
+    method : {'3-point', '2-point', 'cs'}, optional
+        Finite difference method to use:
+            - '2-point' - use the first order accuracy forward or backward
+                          difference.
+            - '3-point' - use central difference in interior points and the
+                          second order accuracy forward or backward difference
+                          near the boundary.
+            - 'cs' - use a complex-step finite difference scheme. This assumes
+                     that the user function is real-valued and can be
+                     analytically continued to the complex plane. Otherwise,
+                     produces bogus results.
+    rel_step : None or array_like, optional
+        Relative step size to use. If None (default) the absolute step size is
+        computed as ``h = rel_step * sign(x0) * max(1, abs(x0))``, with
+        `rel_step` being selected automatically, see Notes. Otherwise
+        ``h = rel_step * sign(x0) * abs(x0)``. For ``method='3-point'`` the
+        sign of `h` is ignored. The calculated step size is possibly adjusted
+        to fit into the bounds.
+    abs_step : array_like, optional
+        Absolute step size to use, possibly adjusted to fit into the bounds.
+        For ``method='3-point'`` the sign of `abs_step` is ignored. By default
+        relative steps are used, only if ``abs_step is not None`` are absolute
+        steps used.
+    f0 : None or array_like, optional
+        If not None it is assumed to be equal to ``fun(x0)``, in this case
+        the ``fun(x0)`` is not called. Default is None.
+    bounds : tuple of array_like, optional
+        Lower and upper bounds on independent variables. Defaults to no bounds.
+        Each bound must match the size of `x0` or be a scalar, in the latter
+        case the bound will be the same for all variables. Use it to limit the
+        range of function evaluation. Bounds checking is not implemented
+        when `as_linear_operator` is True.
+    sparsity : {None, array_like, sparse matrix, 2-tuple}, optional
+        Defines a sparsity structure of the Jacobian matrix. If the Jacobian
+        matrix is known to have only few non-zero elements in each row, then
+        it's possible to estimate its several columns by a single function
+        evaluation [3]_. To perform such economic computations two ingredients
+        are required:
+
+        * structure : array_like or sparse matrix of shape (m, n). A zero
+          element means that a corresponding element of the Jacobian
+          identically equals to zero.
+        * groups : array_like of shape (n,). A column grouping for a given
+          sparsity structure, use `group_columns` to obtain it.
+
+        A single array or a sparse matrix is interpreted as a sparsity
+        structure, and groups are computed inside the function. A tuple is
+        interpreted as (structure, groups). If None (default), a standard
+        dense differencing will be used.
+
+        Note, that sparse differencing makes sense only for large Jacobian
+        matrices where each row contains few non-zero elements.
+    as_linear_operator : bool, optional
+        When True the function returns an `scipy.sparse.linalg.LinearOperator`.
+        Otherwise it returns a dense array or a sparse matrix depending on
+        `sparsity`. The linear operator provides an efficient way of computing
+        ``J.dot(p)`` for any vector ``p`` of shape (n,), but does not allow
+        direct access to individual elements of the matrix. By default
+        `as_linear_operator` is False.
+    args, kwargs : tuple and dict, optional
+        Additional arguments passed to `fun`. Both empty by default.
+        The calling signature is ``fun(x, *args, **kwargs)``.
+
+    Returns
+    -------
+    J : {ndarray, sparse matrix, LinearOperator}
+        Finite difference approximation of the Jacobian matrix.
+        If `as_linear_operator` is True returns a LinearOperator
+        with shape (m, n). Otherwise it returns a dense array or sparse
+        matrix depending on how `sparsity` is defined. If `sparsity`
+        is None then a ndarray with shape (m, n) is returned. If
+        `sparsity` is not None returns a csr_matrix with shape (m, n).
+        For sparse matrices and linear operators it is always returned as
+        a 2-D structure, for ndarrays, if m=1 it is returned
+        as a 1-D gradient array with shape (n,).
+
+    See Also
+    --------
+    check_derivative : Check correctness of a function computing derivatives.
+
+    Notes
+    -----
+    If `rel_step` is not provided, it assigned as ``EPS**(1/s)``, where EPS is
+    determined from the smallest floating point dtype of `x0` or `fun(x0)`,
+    ``np.finfo(x0.dtype).eps``, s=2 for '2-point' method and
+    s=3 for '3-point' method. Such relative step approximately minimizes a sum
+    of truncation and round-off errors, see [1]_. Relative steps are used by
+    default. However, absolute steps are used when ``abs_step is not None``.
+    If any of the absolute or relative steps produces an indistinguishable
+    difference from the original `x0`, ``(x0 + dx) - x0 == 0``, then a
+    automatic step size is substituted for that particular entry.
+
+    A finite difference scheme for '3-point' method is selected automatically.
+    The well-known central difference scheme is used for points sufficiently
+    far from the boundary, and 3-point forward or backward scheme is used for
+    points near the boundary. Both schemes have the second-order accuracy in
+    terms of Taylor expansion. Refer to [2]_ for the formulas of 3-point
+    forward and backward difference schemes.
+
+    For dense differencing when m=1 Jacobian is returned with a shape (n,),
+    on the other hand when n=1 Jacobian is returned with a shape (m, 1).
+    Our motivation is the following: a) It handles a case of gradient
+    computation (m=1) in a conventional way. b) It clearly separates these two
+    different cases. b) In all cases np.atleast_2d can be called to get 2-D
+    Jacobian with correct dimensions.
+
+    References
+    ----------
+    .. [1] W. H. Press et. al. "Numerical Recipes. The Art of Scientific
+           Computing. 3rd edition", sec. 5.7.
+
+    .. [2] A. Curtis, M. J. D. Powell, and J. Reid, "On the estimation of
+           sparse Jacobian matrices", Journal of the Institute of Mathematics
+           and its Applications, 13 (1974), pp. 117-120.
+
+    .. [3] B. Fornberg, "Generation of Finite Difference Formulas on
+           Arbitrarily Spaced Grids", Mathematics of Computation 51, 1988.
+
+    Examples
+    --------
+    >>> import numpy as np
+    >>> from scipy.optimize._numdiff import approx_derivative
+    >>>
+    >>> def f(x, c1, c2):
+    ...     return np.array([x[0] * np.sin(c1 * x[1]),
+    ...                      x[0] * np.cos(c2 * x[1])])
+    ...
+    >>> x0 = np.array([1.0, 0.5 * np.pi])
+    >>> approx_derivative(f, x0, args=(1, 2))
+    array([[ 1.,  0.],
+           [-1.,  0.]])
+
+    Bounds can be used to limit the region of function evaluation.
+    In the example below we compute left and right derivative at point 1.0.
+
+    >>> def g(x):
+    ...     return x**2 if x >= 1 else x
+    ...
+    >>> x0 = 1.0
+    >>> approx_derivative(g, x0, bounds=(-np.inf, 1.0))
+    array([ 1.])
+    >>> approx_derivative(g, x0, bounds=(1.0, np.inf))
+    array([ 2.])
+    """
+    if method not in ['2-point', '3-point', 'cs']:
+        raise ValueError("Unknown method '%s'. " % method)
+
+    xp = array_namespace(x0)
+    _x = atleast_nd(x0, ndim=1, xp=xp)
+    _dtype = xp.float64
+    if xp.isdtype(_x.dtype, "real floating"):
+        _dtype = _x.dtype
+
+    # promotes to floating
+    x0 = xp.astype(_x, _dtype)
+
+    if x0.ndim > 1:
+        raise ValueError("`x0` must have at most 1 dimension.")
+
+    lb, ub = _prepare_bounds(bounds, x0)
+
+    if lb.shape != x0.shape or ub.shape != x0.shape:
+        raise ValueError("Inconsistent shapes between bounds and `x0`.")
+
+    if as_linear_operator and not (np.all(np.isinf(lb))
+                                   and np.all(np.isinf(ub))):
+        raise ValueError("Bounds not supported when "
+                         "`as_linear_operator` is True.")
+
+    def fun_wrapped(x):
+        # send user function same fp type as x0. (but only if cs is not being
+        # used
+        if xp.isdtype(x.dtype, "real floating"):
+            x = xp.astype(x, x0.dtype)
+
+        f = np.atleast_1d(fun(x, *args, **kwargs))
+        if f.ndim > 1:
+            raise RuntimeError("`fun` return value has "
+                               "more than 1 dimension.")
+        return f
+
+    if f0 is None:
+        f0 = fun_wrapped(x0)
+    else:
+        f0 = np.atleast_1d(f0)
+        if f0.ndim > 1:
+            raise ValueError("`f0` passed has more than 1 dimension.")
+
+    if np.any((x0 < lb) | (x0 > ub)):
+        raise ValueError("`x0` violates bound constraints.")
+
+    if as_linear_operator:
+        if rel_step is None:
+            rel_step = _eps_for_method(x0.dtype, f0.dtype, method)
+
+        return _linear_operator_difference(fun_wrapped, x0,
+                                           f0, rel_step, method)
+    else:
+        # by default we use rel_step
+        if abs_step is None:
+            h = _compute_absolute_step(rel_step, x0, f0, method)
+        else:
+            # user specifies an absolute step
+            sign_x0 = (x0 >= 0).astype(float) * 2 - 1
+            h = abs_step
+
+            # cannot have a zero step. This might happen if x0 is very large
+            # or small. In which case fall back to relative step.
+            dx = ((x0 + h) - x0)
+            h = np.where(dx == 0,
+                         _eps_for_method(x0.dtype, f0.dtype, method) *
+                         sign_x0 * np.maximum(1.0, np.abs(x0)),
+                         h)
+
+        if method == '2-point':
+            h, use_one_sided = _adjust_scheme_to_bounds(
+                x0, h, 1, '1-sided', lb, ub)
+        elif method == '3-point':
+            h, use_one_sided = _adjust_scheme_to_bounds(
+                x0, h, 1, '2-sided', lb, ub)
+        elif method == 'cs':
+            use_one_sided = False
+
+        if sparsity is None:
+            return _dense_difference(fun_wrapped, x0, f0, h,
+                                     use_one_sided, method)
+        else:
+            if not issparse(sparsity) and len(sparsity) == 2:
+                structure, groups = sparsity
+            else:
+                structure = sparsity
+                groups = group_columns(sparsity)
+
+            if issparse(structure):
+                structure = csc_matrix(structure)
+            else:
+                structure = np.atleast_2d(structure)
+
+            groups = np.atleast_1d(groups)
+            return _sparse_difference(fun_wrapped, x0, f0, h,
+                                      use_one_sided, structure,
+                                      groups, method)
+
+
+def _linear_operator_difference(fun, x0, f0, h, method):
+    m = f0.size
+    n = x0.size
+
+    if method == '2-point':
+        def matvec(p):
+            if np.array_equal(p, np.zeros_like(p)):
+                return np.zeros(m)
+            dx = h / norm(p)
+            x = x0 + dx*p
+            df = fun(x) - f0
+            return df / dx
+
+    elif method == '3-point':
+        def matvec(p):
+            if np.array_equal(p, np.zeros_like(p)):
+                return np.zeros(m)
+            dx = 2*h / norm(p)
+            x1 = x0 - (dx/2)*p
+            x2 = x0 + (dx/2)*p
+            f1 = fun(x1)
+            f2 = fun(x2)
+            df = f2 - f1
+            return df / dx
+
+    elif method == 'cs':
+        def matvec(p):
+            if np.array_equal(p, np.zeros_like(p)):
+                return np.zeros(m)
+            dx = h / norm(p)
+            x = x0 + dx*p*1.j
+            f1 = fun(x)
+            df = f1.imag
+            return df / dx
+
+    else:
+        raise RuntimeError("Never be here.")
+
+    return LinearOperator((m, n), matvec)
+
+
+def _dense_difference(fun, x0, f0, h, use_one_sided, method):
+    m = f0.size
+    n = x0.size
+    J_transposed = np.empty((n, m))
+    h_vecs = np.diag(h)
+
+    for i in range(h.size):
+        if method == '2-point':
+            x = x0 + h_vecs[i]
+            dx = x[i] - x0[i]  # Recompute dx as exactly representable number.
+            df = fun(x) - f0
+        elif method == '3-point' and use_one_sided[i]:
+            x1 = x0 + h_vecs[i]
+            x2 = x0 + 2 * h_vecs[i]
+            dx = x2[i] - x0[i]
+            f1 = fun(x1)
+            f2 = fun(x2)
+            df = -3.0 * f0 + 4 * f1 - f2
+        elif method == '3-point' and not use_one_sided[i]:
+            x1 = x0 - h_vecs[i]
+            x2 = x0 + h_vecs[i]
+            dx = x2[i] - x1[i]
+            f1 = fun(x1)
+            f2 = fun(x2)
+            df = f2 - f1
+        elif method == 'cs':
+            f1 = fun(x0 + h_vecs[i]*1.j)
+            df = f1.imag
+            dx = h_vecs[i, i]
+        else:
+            raise RuntimeError("Never be here.")
+
+        J_transposed[i] = df / dx
+
+    if m == 1:
+        J_transposed = np.ravel(J_transposed)
+
+    return J_transposed.T
+
+
+def _sparse_difference(fun, x0, f0, h, use_one_sided,
+                       structure, groups, method):
+    m = f0.size
+    n = x0.size
+    row_indices = []
+    col_indices = []
+    fractions = []
+
+    n_groups = np.max(groups) + 1
+    for group in range(n_groups):
+        # Perturb variables which are in the same group simultaneously.
+        e = np.equal(group, groups)
+        h_vec = h * e
+        if method == '2-point':
+            x = x0 + h_vec
+            dx = x - x0
+            df = fun(x) - f0
+            # The result is  written to columns which correspond to perturbed
+            # variables.
+            cols, = np.nonzero(e)
+            # Find all non-zero elements in selected columns of Jacobian.
+            i, j, _ = find(structure[:, cols])
+            # Restore column indices in the full array.
+            j = cols[j]
+        elif method == '3-point':
+            # Here we do conceptually the same but separate one-sided
+            # and two-sided schemes.
+            x1 = x0.copy()
+            x2 = x0.copy()
+
+            mask_1 = use_one_sided & e
+            x1[mask_1] += h_vec[mask_1]
+            x2[mask_1] += 2 * h_vec[mask_1]
+
+            mask_2 = ~use_one_sided & e
+            x1[mask_2] -= h_vec[mask_2]
+            x2[mask_2] += h_vec[mask_2]
+
+            dx = np.zeros(n)
+            dx[mask_1] = x2[mask_1] - x0[mask_1]
+            dx[mask_2] = x2[mask_2] - x1[mask_2]
+
+            f1 = fun(x1)
+            f2 = fun(x2)
+
+            cols, = np.nonzero(e)
+            i, j, _ = find(structure[:, cols])
+            j = cols[j]
+
+            mask = use_one_sided[j]
+            df = np.empty(m)
+
+            rows = i[mask]
+            df[rows] = -3 * f0[rows] + 4 * f1[rows] - f2[rows]
+
+            rows = i[~mask]
+            df[rows] = f2[rows] - f1[rows]
+        elif method == 'cs':
+            f1 = fun(x0 + h_vec*1.j)
+            df = f1.imag
+            dx = h_vec
+            cols, = np.nonzero(e)
+            i, j, _ = find(structure[:, cols])
+            j = cols[j]
+        else:
+            raise ValueError("Never be here.")
+
+        # All that's left is to compute the fraction. We store i, j and
+        # fractions as separate arrays and later construct coo_matrix.
+        row_indices.append(i)
+        col_indices.append(j)
+        fractions.append(df[i] / dx[j])
+
+    row_indices = np.hstack(row_indices)
+    col_indices = np.hstack(col_indices)
+    fractions = np.hstack(fractions)
+    J = coo_matrix((fractions, (row_indices, col_indices)), shape=(m, n))
+    return csr_matrix(J)
+
+
+def check_derivative(fun, jac, x0, bounds=(-np.inf, np.inf), args=(),
+                     kwargs={}):
+    """Check correctness of a function computing derivatives (Jacobian or
+    gradient) by comparison with a finite difference approximation.
+
+    Parameters
+    ----------
+    fun : callable
+        Function of which to estimate the derivatives. The argument x
+        passed to this function is ndarray of shape (n,) (never a scalar
+        even if n=1). It must return 1-D array_like of shape (m,) or a scalar.
+    jac : callable
+        Function which computes Jacobian matrix of `fun`. It must work with
+        argument x the same way as `fun`. The return value must be array_like
+        or sparse matrix with an appropriate shape.
+    x0 : array_like of shape (n,) or float
+        Point at which to estimate the derivatives. Float will be converted
+        to 1-D array.
+    bounds : 2-tuple of array_like, optional
+        Lower and upper bounds on independent variables. Defaults to no bounds.
+        Each bound must match the size of `x0` or be a scalar, in the latter
+        case the bound will be the same for all variables. Use it to limit the
+        range of function evaluation.
+    args, kwargs : tuple and dict, optional
+        Additional arguments passed to `fun` and `jac`. Both empty by default.
+        The calling signature is ``fun(x, *args, **kwargs)`` and the same
+        for `jac`.
+
+    Returns
+    -------
+    accuracy : float
+        The maximum among all relative errors for elements with absolute values
+        higher than 1 and absolute errors for elements with absolute values
+        less or equal than 1. If `accuracy` is on the order of 1e-6 or lower,
+        then it is likely that your `jac` implementation is correct.
+
+    See Also
+    --------
+    approx_derivative : Compute finite difference approximation of derivative.
+
+    Examples
+    --------
+    >>> import numpy as np
+    >>> from scipy.optimize._numdiff import check_derivative
+    >>>
+    >>>
+    >>> def f(x, c1, c2):
+    ...     return np.array([x[0] * np.sin(c1 * x[1]),
+    ...                      x[0] * np.cos(c2 * x[1])])
+    ...
+    >>> def jac(x, c1, c2):
+    ...     return np.array([
+    ...         [np.sin(c1 * x[1]),  c1 * x[0] * np.cos(c1 * x[1])],
+    ...         [np.cos(c2 * x[1]), -c2 * x[0] * np.sin(c2 * x[1])]
+    ...     ])
+    ...
+    >>>
+    >>> x0 = np.array([1.0, 0.5 * np.pi])
+    >>> check_derivative(f, jac, x0, args=(1, 2))
+    2.4492935982947064e-16
+    """
+    J_to_test = jac(x0, *args, **kwargs)
+    if issparse(J_to_test):
+        J_diff = approx_derivative(fun, x0, bounds=bounds, sparsity=J_to_test,
+                                   args=args, kwargs=kwargs)
+        J_to_test = csr_matrix(J_to_test)
+        abs_err = J_to_test - J_diff
+        i, j, abs_err_data = find(abs_err)
+        J_diff_data = np.asarray(J_diff[i, j]).ravel()
+        return np.max(np.abs(abs_err_data) /
+                      np.maximum(1, np.abs(J_diff_data)))
+    else:
+        J_diff = approx_derivative(fun, x0, bounds=bounds,
+                                   args=args, kwargs=kwargs)
+        abs_err = np.abs(J_to_test - J_diff)
+        return np.max(abs_err / np.maximum(1, np.abs(J_diff)))

env-llmeval/lib/python3.10/site-packages/scipy/optimize/_remove_redundancy.py

@@ -0,0 +1,522 @@
+"""
+Routines for removing redundant (linearly dependent) equations from linear
+programming equality constraints.
+"""
+# Author: Matt Haberland
+
+import numpy as np
+from scipy.linalg import svd
+from scipy.linalg.interpolative import interp_decomp
+import scipy
+from scipy.linalg.blas import dtrsm
+
+
+def _row_count(A):
+    """
+    Counts the number of nonzeros in each row of input array A.
+    Nonzeros are defined as any element with absolute value greater than
+    tol = 1e-13. This value should probably be an input to the function.
+
+    Parameters
+    ----------
+    A : 2-D array
+        An array representing a matrix
+
+    Returns
+    -------
+    rowcount : 1-D array
+        Number of nonzeros in each row of A
+
+    """
+    tol = 1e-13
+    return np.array((abs(A) > tol).sum(axis=1)).flatten()
+
+
+def _get_densest(A, eligibleRows):
+    """
+    Returns the index of the densest row of A. Ignores rows that are not
+    eligible for consideration.
+
+    Parameters
+    ----------
+    A : 2-D array
+        An array representing a matrix
+    eligibleRows : 1-D logical array
+        Values indicate whether the corresponding row of A is eligible
+        to be considered
+
+    Returns
+    -------
+    i_densest : int
+        Index of the densest row in A eligible for consideration
+
+    """
+    rowCounts = _row_count(A)
+    return np.argmax(rowCounts * eligibleRows)
+
+
+def _remove_zero_rows(A, b):
+    """
+    Eliminates trivial equations from system of equations defined by Ax = b
+   and identifies trivial infeasibilities
+
+    Parameters
+    ----------
+    A : 2-D array
+        An array representing the left-hand side of a system of equations
+    b : 1-D array
+        An array representing the right-hand side of a system of equations
+
+    Returns
+    -------
+    A : 2-D array
+        An array representing the left-hand side of a system of equations
+    b : 1-D array
+        An array representing the right-hand side of a system of equations
+    status: int
+        An integer indicating the status of the removal operation
+        0: No infeasibility identified
+        2: Trivially infeasible
+    message : str
+        A string descriptor of the exit status of the optimization.
+
+    """
+    status = 0
+    message = ""
+    i_zero = _row_count(A) == 0
+    A = A[np.logical_not(i_zero), :]
+    if not np.allclose(b[i_zero], 0):
+        status = 2
+        message = "There is a zero row in A_eq with a nonzero corresponding " \
+                  "entry in b_eq. The problem is infeasible."
+    b = b[np.logical_not(i_zero)]
+    return A, b, status, message
+
+
+def bg_update_dense(plu, perm_r, v, j):
+    LU, p = plu
+
+    vperm = v[perm_r]
+    u = dtrsm(1, LU, vperm, lower=1, diag=1)
+    LU[:j+1, j] = u[:j+1]
+    l = u[j+1:]
+    piv = LU[j, j]
+    LU[j+1:, j] += (l/piv)
+    return LU, p
+
+
+def _remove_redundancy_pivot_dense(A, rhs, true_rank=None):
+    """
+    Eliminates redundant equations from system of equations defined by Ax = b
+    and identifies infeasibilities.
+
+    Parameters
+    ----------
+    A : 2-D sparse matrix
+        An matrix representing the left-hand side of a system of equations
+    rhs : 1-D array
+        An array representing the right-hand side of a system of equations
+
+    Returns
+    -------
+    A : 2-D sparse matrix
+        A matrix representing the left-hand side of a system of equations
+    rhs : 1-D array
+        An array representing the right-hand side of a system of equations
+    status: int
+        An integer indicating the status of the system
+        0: No infeasibility identified
+        2: Trivially infeasible
+    message : str
+        A string descriptor of the exit status of the optimization.
+
+    References
+    ----------
+    .. [2] Andersen, Erling D. "Finding all linearly dependent rows in
+           large-scale linear programming." Optimization Methods and Software
+           6.3 (1995): 219-227.
+
+    """
+    tolapiv = 1e-8
+    tolprimal = 1e-8
+    status = 0
+    message = ""
+    inconsistent = ("There is a linear combination of rows of A_eq that "
+                    "results in zero, suggesting a redundant constraint. "
+                    "However the same linear combination of b_eq is "
+                    "nonzero, suggesting that the constraints conflict "
+                    "and the problem is infeasible.")
+    A, rhs, status, message = _remove_zero_rows(A, rhs)
+
+    if status != 0:
+        return A, rhs, status, message
+
+    m, n = A.shape
+
+    v = list(range(m))      # Artificial column indices.
+    b = list(v)             # Basis column indices.
+    # This is better as a list than a set because column order of basis matrix
+    # needs to be consistent.
+    d = []                  # Indices of dependent rows
+    perm_r = None
+
+    A_orig = A
+    A = np.zeros((m, m + n), order='F')
+    np.fill_diagonal(A, 1)
+    A[:, m:] = A_orig
+    e = np.zeros(m)
+
+    js_candidates = np.arange(m, m+n, dtype=int)  # candidate columns for basis
+    # manual masking was faster than masked array
+    js_mask = np.ones(js_candidates.shape, dtype=bool)
+
+    # Implements basic algorithm from [2]
+    # Uses some of the suggested improvements (removing zero rows and
+    # Bartels-Golub update idea).
+    # Removing column singletons would be easy, but it is not as important
+    # because the procedure is performed only on the equality constraint
+    # matrix from the original problem - not on the canonical form matrix,
+    # which would have many more column singletons due to slack variables
+    # from the inequality constraints.
+    # The thoughts on "crashing" the initial basis are only really useful if
+    # the matrix is sparse.
+
+    lu = np.eye(m, order='F'), np.arange(m)  # initial LU is trivial
+    perm_r = lu[1]
+    for i in v:
+
+        e[i] = 1
+        if i > 0:
+            e[i-1] = 0
+
+        try:  # fails for i==0 and any time it gets ill-conditioned
+            j = b[i-1]
+            lu = bg_update_dense(lu, perm_r, A[:, j], i-1)
+        except Exception:
+            lu = scipy.linalg.lu_factor(A[:, b])
+            LU, p = lu
+            perm_r = list(range(m))
+            for i1, i2 in enumerate(p):
+                perm_r[i1], perm_r[i2] = perm_r[i2], perm_r[i1]
+
+        pi = scipy.linalg.lu_solve(lu, e, trans=1)
+
+        js = js_candidates[js_mask]
+        batch = 50
+
+        # This is a tiny bit faster than looping over columns individually,
+        # like for j in js: if abs(A[:,j].transpose().dot(pi)) > tolapiv:
+        for j_index in range(0, len(js), batch):
+            j_indices = js[j_index: min(j_index+batch, len(js))]
+
+            c = abs(A[:, j_indices].transpose().dot(pi))
+            if (c > tolapiv).any():
+                j = js[j_index + np.argmax(c)]  # very independent column
+                b[i] = j
+                js_mask[j-m] = False
+                break
+        else:
+            bibar = pi.T.dot(rhs.reshape(-1, 1))
+            bnorm = np.linalg.norm(rhs)
+            if abs(bibar)/(1+bnorm) > tolprimal:  # inconsistent
+                status = 2
+                message = inconsistent
+                return A_orig, rhs, status, message
+            else:  # dependent
+                d.append(i)
+                if true_rank is not None and len(d) == m - true_rank:
+                    break   # found all redundancies
+
+    keep = set(range(m))
+    keep = list(keep - set(d))
+    return A_orig[keep, :], rhs[keep], status, message
+
+
+def _remove_redundancy_pivot_sparse(A, rhs):
+    """
+    Eliminates redundant equations from system of equations defined by Ax = b
+    and identifies infeasibilities.
+
+    Parameters
+    ----------
+    A : 2-D sparse matrix
+        An matrix representing the left-hand side of a system of equations
+    rhs : 1-D array
+        An array representing the right-hand side of a system of equations
+
+    Returns
+    -------
+    A : 2-D sparse matrix
+        A matrix representing the left-hand side of a system of equations
+    rhs : 1-D array
+        An array representing the right-hand side of a system of equations
+    status: int
+        An integer indicating the status of the system
+        0: No infeasibility identified
+        2: Trivially infeasible
+    message : str
+        A string descriptor of the exit status of the optimization.
+
+    References
+    ----------
+    .. [2] Andersen, Erling D. "Finding all linearly dependent rows in
+           large-scale linear programming." Optimization Methods and Software
+           6.3 (1995): 219-227.
+
+    """
+
+    tolapiv = 1e-8
+    tolprimal = 1e-8
+    status = 0
+    message = ""
+    inconsistent = ("There is a linear combination of rows of A_eq that "
+                    "results in zero, suggesting a redundant constraint. "
+                    "However the same linear combination of b_eq is "
+                    "nonzero, suggesting that the constraints conflict "
+                    "and the problem is infeasible.")
+    A, rhs, status, message = _remove_zero_rows(A, rhs)
+
+    if status != 0:
+        return A, rhs, status, message
+
+    m, n = A.shape
+
+    v = list(range(m))      # Artificial column indices.
+    b = list(v)             # Basis column indices.
+    # This is better as a list than a set because column order of basis matrix
+    # needs to be consistent.
+    k = set(range(m, m+n))  # Structural column indices.
+    d = []                  # Indices of dependent rows
+
+    A_orig = A
+    A = scipy.sparse.hstack((scipy.sparse.eye(m), A)).tocsc()
+    e = np.zeros(m)
+
+    # Implements basic algorithm from [2]
+    # Uses only one of the suggested improvements (removing zero rows).
+    # Removing column singletons would be easy, but it is not as important
+    # because the procedure is performed only on the equality constraint
+    # matrix from the original problem - not on the canonical form matrix,
+    # which would have many more column singletons due to slack variables
+    # from the inequality constraints.
+    # The thoughts on "crashing" the initial basis sound useful, but the
+    # description of the procedure seems to assume a lot of familiarity with
+    # the subject; it is not very explicit. I already went through enough
+    # trouble getting the basic algorithm working, so I was not interested in
+    # trying to decipher this, too. (Overall, the paper is fraught with
+    # mistakes and ambiguities - which is strange, because the rest of
+    # Andersen's papers are quite good.)
+    # I tried and tried and tried to improve performance using the
+    # Bartels-Golub update. It works, but it's only practical if the LU
+    # factorization can be specialized as described, and that is not possible
+    # until the SciPy SuperLU interface permits control over column
+    # permutation - see issue #7700.
+
+    for i in v:
+        B = A[:, b]
+
+        e[i] = 1
+        if i > 0:
+            e[i-1] = 0
+
+        pi = scipy.sparse.linalg.spsolve(B.transpose(), e).reshape(-1, 1)
+
+        js = list(k-set(b))  # not efficient, but this is not the time sink...
+
+        # Due to overhead, it tends to be faster (for problems tested) to
+        # compute the full matrix-vector product rather than individual
+        # vector-vector products (with the chance of terminating as soon
+        # as any are nonzero). For very large matrices, it might be worth
+        # it to compute, say, 100 or 1000 at a time and stop when a nonzero
+        # is found.
+
+        c = (np.abs(A[:, js].transpose().dot(pi)) > tolapiv).nonzero()[0]
+        if len(c) > 0:  # independent
+            j = js[c[0]]
+            # in a previous commit, the previous line was changed to choose
+            # index j corresponding with the maximum dot product.
+            # While this avoided issues with almost
+            # singular matrices, it slowed the routine in most NETLIB tests.
+            # I think this is because these columns were denser than the
+            # first column with nonzero dot product (c[0]).
+            # It would be nice to have a heuristic that balances sparsity with
+            # high dot product, but I don't think it's worth the time to
+            # develop one right now. Bartels-Golub update is a much higher
+            # priority.
+            b[i] = j  # replace artificial column
+        else:
+            bibar = pi.T.dot(rhs.reshape(-1, 1))
+            bnorm = np.linalg.norm(rhs)
+            if abs(bibar)/(1 + bnorm) > tolprimal:
+                status = 2
+                message = inconsistent
+                return A_orig, rhs, status, message
+            else:  # dependent
+                d.append(i)
+
+    keep = set(range(m))
+    keep = list(keep - set(d))
+    return A_orig[keep, :], rhs[keep], status, message
+
+
+def _remove_redundancy_svd(A, b):
+    """
+    Eliminates redundant equations from system of equations defined by Ax = b
+    and identifies infeasibilities.
+
+    Parameters
+    ----------
+    A : 2-D array
+        An array representing the left-hand side of a system of equations
+    b : 1-D array
+        An array representing the right-hand side of a system of equations
+
+    Returns
+    -------
+    A : 2-D array
+        An array representing the left-hand side of a system of equations
+    b : 1-D array
+        An array representing the right-hand side of a system of equations
+    status: int
+        An integer indicating the status of the system
+        0: No infeasibility identified
+        2: Trivially infeasible
+    message : str
+        A string descriptor of the exit status of the optimization.
+
+    References
+    ----------
+    .. [2] Andersen, Erling D. "Finding all linearly dependent rows in
+           large-scale linear programming." Optimization Methods and Software
+           6.3 (1995): 219-227.
+
+    """
+
+    A, b, status, message = _remove_zero_rows(A, b)
+
+    if status != 0:
+        return A, b, status, message
+
+    U, s, Vh = svd(A)
+    eps = np.finfo(float).eps
+    tol = s.max() * max(A.shape) * eps
+
+    m, n = A.shape
+    s_min = s[-1] if m <= n else 0
+
+    # this algorithm is faster than that of [2] when the nullspace is small
+    # but it could probably be improvement by randomized algorithms and with
+    # a sparse implementation.
+    # it relies on repeated singular value decomposition to find linearly
+    # dependent rows (as identified by columns of U that correspond with zero
+    # singular values). Unfortunately, only one row can be removed per
+    # decomposition (I tried otherwise; doing so can cause problems.)
+    # It would be nice if we could do truncated SVD like sp.sparse.linalg.svds
+    # but that function is unreliable at finding singular values near zero.
+    # Finding max eigenvalue L of A A^T, then largest eigenvalue (and
+    # associated eigenvector) of -A A^T + L I (I is identity) via power
+    # iteration would also work in theory, but is only efficient if the
+    # smallest nonzero eigenvalue of A A^T is close to the largest nonzero
+    # eigenvalue.
+
+    while abs(s_min) < tol:
+        v = U[:, -1]  # TODO: return these so user can eliminate from problem?
+        # rows need to be represented in significant amount
+        eligibleRows = np.abs(v) > tol * 10e6
+        if not np.any(eligibleRows) or np.any(np.abs(v.dot(A)) > tol):
+            status = 4
+            message = ("Due to numerical issues, redundant equality "
+                       "constraints could not be removed automatically. "
+                       "Try providing your constraint matrices as sparse "
+                       "matrices to activate sparse presolve, try turning "
+                       "off redundancy removal, or try turning off presolve "
+                       "altogether.")
+            break
+        if np.any(np.abs(v.dot(b)) > tol * 100):  # factor of 100 to fix 10038 and 10349
+            status = 2
+            message = ("There is a linear combination of rows of A_eq that "
+                       "results in zero, suggesting a redundant constraint. "
+                       "However the same linear combination of b_eq is "
+                       "nonzero, suggesting that the constraints conflict "
+                       "and the problem is infeasible.")
+            break
+
+        i_remove = _get_densest(A, eligibleRows)
+        A = np.delete(A, i_remove, axis=0)
+        b = np.delete(b, i_remove)
+        U, s, Vh = svd(A)
+        m, n = A.shape
+        s_min = s[-1] if m <= n else 0
+
+    return A, b, status, message
+
+
+def _remove_redundancy_id(A, rhs, rank=None, randomized=True):
+    """Eliminates redundant equations from a system of equations.
+
+    Eliminates redundant equations from system of equations defined by Ax = b
+    and identifies infeasibilities.
+
+    Parameters
+    ----------
+    A : 2-D array
+        An array representing the left-hand side of a system of equations
+    rhs : 1-D array
+        An array representing the right-hand side of a system of equations
+    rank : int, optional
+        The rank of A
+    randomized: bool, optional
+        True for randomized interpolative decomposition
+
+    Returns
+    -------
+    A : 2-D array
+        An array representing the left-hand side of a system of equations
+    rhs : 1-D array
+        An array representing the right-hand side of a system of equations
+    status: int
+        An integer indicating the status of the system
+        0: No infeasibility identified
+        2: Trivially infeasible
+    message : str
+        A string descriptor of the exit status of the optimization.
+
+    """
+
+    status = 0
+    message = ""
+    inconsistent = ("There is a linear combination of rows of A_eq that "
+                    "results in zero, suggesting a redundant constraint. "
+                    "However the same linear combination of b_eq is "
+                    "nonzero, suggesting that the constraints conflict "
+                    "and the problem is infeasible.")
+
+    A, rhs, status, message = _remove_zero_rows(A, rhs)
+
+    if status != 0:
+        return A, rhs, status, message
+
+    m, n = A.shape
+
+    k = rank
+    if rank is None:
+        k = np.linalg.matrix_rank(A)
+
+    idx, proj = interp_decomp(A.T, k, rand=randomized)
+
+    # first k entries in idx are indices of the independent rows
+    # remaining entries are the indices of the m-k dependent rows
+    # proj provides a linear combinations of rows of A2 that form the
+    # remaining m-k (dependent) rows. The same linear combination of entries
+    # in rhs2 must give the remaining m-k entries. If not, the system is
+    # inconsistent, and the problem is infeasible.
+    if not np.allclose(rhs[idx[:k]] @ proj, rhs[idx[k:]]):
+        status = 2
+        message = inconsistent
+
+    # sort indices because the other redundancy removal routines leave rows
+    # in original order and tests were written with that in mind
+    idx = sorted(idx[:k])
+    A2 = A[idx, :]
+    rhs2 = rhs[idx]
+    return A2, rhs2, status, message