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Datasets:
imageomics
/
tree-of-life-vector-db

Tasks:
Image Feature Extraction
Modalities:
Image
Languages:
English
Size:
1M<n<10M
Tags:
biology
image
animals
CV
License:
Dataset card Files Community
1
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Add additional information about pybioclip

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  1. README.md +16 -6
README.md CHANGED
@@ -38,12 +38,11 @@ containing the embeddings for all images in the [imageomics/TreeOfLife-10M](http
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  ### Dataset Description
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- - **Curated by:** list curators (authors for _data_ citation, moved up)
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- - **Language(s) (NLP):** [More Information Needed]
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  <!-- Provide the basic links for the dataset. These will show up on the sidebar to the right of your dataset card ("Curated by" too). -->
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  - **Homepage:** https://imageomics.github.io/
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  - **Repository:** [imageonomics/bioclip-vector-db](https://github.com/Imageomics/bioclip-vector-db)
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- - **Paper:**
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  This dataset contains the generated vector database built using ChromaDb as the backend vector database solution for the entire TreeOfLife-10M dataset.
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  ### Source Data
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- [imageomics/TreeOfLife-10M](https://huggingface.co/datasets/imageomics/TreeOfLife-10M) dataset was used as the source to generate all the embeddings in the vector database.
 
 
 
 
 
 
 
 
 
 
 
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  ## Citation
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  ## Dataset Card Authors
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- [Sreejith Menon](https://github.com/smenon8)
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  ## Dataset Card Contact
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- [Sreejith Menon](https://github.com/smenon8)
 
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  ### Dataset Description
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+ - **Curated by:** Sreejith Menon - [git](https://github.com/smenon8) [in](https://www.linkedin.com/in/smenon8/)
 
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  <!-- Provide the basic links for the dataset. These will show up on the sidebar to the right of your dataset card ("Curated by" too). -->
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  - **Homepage:** https://imageomics.github.io/
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  - **Repository:** [imageonomics/bioclip-vector-db](https://github.com/Imageomics/bioclip-vector-db)
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+ - **Paper:** N/A
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  This dataset contains the generated vector database built using ChromaDb as the backend vector database solution for the entire TreeOfLife-10M dataset.
 
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  ### Source Data
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+ [imageomics/TreeOfLife-10M](https://huggingface.co/datasets/imageomics/TreeOfLife-10M) dataset was the source for all images in the database.
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+ Along with every image in the database we also store the taxonomic information as additional columns in the vector database:
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+ * kingdom
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+ * phylum
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+ * class
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+ * order
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+ * family
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+ * genus
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+ * species
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+ * common name
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+
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+ The image embedding were generated using the [`TreeOfLifeClassifier`](https://github.com/Imageomics/pybioclip/blob/35ad338bb904d18b295dabf8b23377a343273c06/src/bioclip/predict.py#L429) available in the [pybioclip](https://github.com/Imageomics/pybioclip/tree/main) library.
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  ## Citation
 
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  ## Dataset Card Authors
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+ Sreejith Menon - [git](https://github.com/smenon8) [in](https://www.linkedin.com/in/smenon8/)
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  ## Dataset Card Contact
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+ Sreejith Menon - [git](https://github.com/smenon8) [in](https://www.linkedin.com/in/smenon8/)