latticetower commited on
Commit
0f72087
·
verified ·
1 Parent(s): de6d124

Create README.md

Browse files
Files changed (1) hide show
  1. README.md +19 -0
README.md ADDED
@@ -0,0 +1,19 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ ---
2
+ language:
3
+ - en
4
+ ---
5
+ The dataset was extracted from antismash-db 4.0 postgresql dump, the corresponding description can be found here:
6
+
7
+ https://antismash-db.secondarymetabolites.org/
8
+
9
+ If you want to use it, please refer to the original licensing terms and properly cite the authors.
10
+
11
+ Each line in .csv file corresponds to NRPS module, both with the monomer produced by it.
12
+ Each module has a specific sequence of domains. Module possible structure is described in the literature.
13
+ To clean the data, I referred to wiki definitions
14
+ https://en.wikipedia.org/wiki/Nonribosomal_peptide#Modules
15
+
16
+ Each line has the corresponding columns, if the column contains protein sequence, it means that module has the corresponding domain.
17
+
18
+ The data are cleaned to keep only aminoacid monomers and corresponding D-aminoacids
19
+ (it should be defined by the presence of Epimerization domain).