Datasets:

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longevity-genie

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bio-mcp-data

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Longevity Genie 3

Error code:   DatasetGenerationCastError
Exception:    DatasetGenerationCastError
Message:      An error occurred while generating the dataset

All the data files must have the same columns, but at some point there are 30 new columns ({'Temperature (K)', 'Maximum longevity (yrs)', 'Litter/Clutch size', 'IMR (per yr)', 'Sample size', 'Genus', 'Weaning (days)', 'Litters/Clutches per year', 'Family', 'Phylum', 'Body mass (g)', 'Kingdom', 'Female maturity (days)', 'MRDT (yrs)', 'Gestation/Incubation (days)', 'Male maturity (days)', 'Order', 'Data quality', 'Species', 'Metabolic rate (W)', 'Specimen origin', 'References', 'Class', 'HAGRID', 'Weaning weight (g)', 'Source', 'Adult weight (g)', 'Growth rate (1/days)', 'Inter-litter/Interbirth interval', 'Birth weight (g)'}) and 7 missing columns ({'Scientific name', 'Taxon ID', 'Genebuild Method', 'Accession', 'Ensembl Assembly', 'Variation database', 'Regulation database'}).

This happened while the csv dataset builder was generating data using

hf://datasets/longevity-genie/bio-mcp-data/hagr/anage_data.csv (at revision 9bc1d26c25f7bf5c79a407610f1497c1fc16f63d)

Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback:    Traceback (most recent call last):
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1871, in _prepare_split_single
                  writer.write_table(table)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/arrow_writer.py", line 643, in write_table
                  pa_table = table_cast(pa_table, self._schema)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2293, in table_cast
                  return cast_table_to_schema(table, schema)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2241, in cast_table_to_schema
                  raise CastError(
              datasets.table.CastError: Couldn't cast
              HAGRID: int64
              Kingdom: string
              Phylum: string
              Class: string
              Order: string
              Family: string
              Genus: string
              Species: string
              Common name: string
              Female maturity (days): double
              Male maturity (days): double
              Gestation/Incubation (days): double
              Weaning (days): double
              Litter/Clutch size: double
              Litters/Clutches per year: double
              Inter-litter/Interbirth interval: double
              Birth weight (g): double
              Weaning weight (g): double
              Adult weight (g): double
              Growth rate (1/days): double
              Maximum longevity (yrs): double
              Source: string
              Specimen origin: string
              Sample size: string
              Data quality: string
              IMR (per yr): double
              MRDT (yrs): double
              Metabolic rate (W): double
              Body mass (g): double
              Temperature (K): double
              References: string
              -- schema metadata --
              pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 4238
              to
              {'Common name': Value(dtype='string', id=None), 'Scientific name': Value(dtype='string', id=None), 'Taxon ID': Value(dtype='int64', id=None), 'Ensembl Assembly': Value(dtype='string', id=None), 'Accession': Value(dtype='string', id=None), 'Genebuild Method': Value(dtype='string', id=None), 'Variation database': Value(dtype='string', id=None), 'Regulation database': Value(dtype='string', id=None)}
              because column names don't match
              
              During handling of the above exception, another exception occurred:
              
              Traceback (most recent call last):
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1436, in compute_config_parquet_and_info_response
                  parquet_operations = convert_to_parquet(builder)
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1053, in convert_to_parquet
                  builder.download_and_prepare(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 925, in download_and_prepare
                  self._download_and_prepare(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1001, in _download_and_prepare
                  self._prepare_split(split_generator, **prepare_split_kwargs)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1742, in _prepare_split
                  for job_id, done, content in self._prepare_split_single(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1873, in _prepare_split_single
                  raise DatasetGenerationCastError.from_cast_error(
              datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
              
              All the data files must have the same columns, but at some point there are 30 new columns ({'Temperature (K)', 'Maximum longevity (yrs)', 'Litter/Clutch size', 'IMR (per yr)', 'Sample size', 'Genus', 'Weaning (days)', 'Litters/Clutches per year', 'Family', 'Phylum', 'Body mass (g)', 'Kingdom', 'Female maturity (days)', 'MRDT (yrs)', 'Gestation/Incubation (days)', 'Male maturity (days)', 'Order', 'Data quality', 'Species', 'Metabolic rate (W)', 'Specimen origin', 'References', 'Class', 'HAGRID', 'Weaning weight (g)', 'Source', 'Adult weight (g)', 'Growth rate (1/days)', 'Inter-litter/Interbirth interval', 'Birth weight (g)'}) and 7 missing columns ({'Scientific name', 'Taxon ID', 'Genebuild Method', 'Accession', 'Ensembl Assembly', 'Variation database', 'Regulation database'}).
              
              This happened while the csv dataset builder was generating data using
              
              hf://datasets/longevity-genie/bio-mcp-data/hagr/anage_data.csv (at revision 9bc1d26c25f7bf5c79a407610f1497c1fc16f63d)
              
              Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)