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- .gitattributes +2 -0
- .gitignore +3 -0
- README.md +35 -3
- test.csv +51 -0
- test/patient101/patient101_sax_ed.nii.gz +3 -0
- test/patient101/patient101_sax_ed_gt.nii.gz +3 -0
- test/patient101/patient101_sax_es.nii.gz +3 -0
- test/patient101/patient101_sax_es_gt.nii.gz +3 -0
- test/patient101/patient101_sax_t.nii.gz +3 -0
- test/patient102/patient102_sax_ed.nii.gz +3 -0
- test/patient102/patient102_sax_ed_gt.nii.gz +3 -0
- test/patient102/patient102_sax_es.nii.gz +3 -0
- test/patient102/patient102_sax_es_gt.nii.gz +3 -0
- test/patient102/patient102_sax_t.nii.gz +3 -0
- test/patient103/patient103_sax_ed.nii.gz +3 -0
- test/patient103/patient103_sax_ed_gt.nii.gz +3 -0
- test/patient103/patient103_sax_es.nii.gz +3 -0
- test/patient103/patient103_sax_es_gt.nii.gz +3 -0
- test/patient103/patient103_sax_t.nii.gz +3 -0
- test/patient104/patient104_sax_ed.nii.gz +3 -0
- test/patient104/patient104_sax_ed_gt.nii.gz +3 -0
- test/patient104/patient104_sax_es.nii.gz +3 -0
- test/patient104/patient104_sax_es_gt.nii.gz +3 -0
- test/patient104/patient104_sax_t.nii.gz +3 -0
- test/patient105/patient105_sax_ed.nii.gz +3 -0
- test/patient105/patient105_sax_ed_gt.nii.gz +3 -0
- test/patient105/patient105_sax_es.nii.gz +3 -0
- test/patient105/patient105_sax_es_gt.nii.gz +3 -0
- test/patient105/patient105_sax_t.nii.gz +3 -0
- test/patient106/patient106_sax_ed.nii.gz +3 -0
- test/patient106/patient106_sax_ed_gt.nii.gz +3 -0
- test/patient106/patient106_sax_es.nii.gz +3 -0
- test/patient106/patient106_sax_es_gt.nii.gz +3 -0
- test/patient106/patient106_sax_t.nii.gz +3 -0
- test/patient107/patient107_sax_ed.nii.gz +3 -0
- test/patient107/patient107_sax_ed_gt.nii.gz +3 -0
- test/patient107/patient107_sax_es.nii.gz +3 -0
- test/patient107/patient107_sax_es_gt.nii.gz +3 -0
- test/patient107/patient107_sax_t.nii.gz +3 -0
- test/patient108/patient108_sax_ed.nii.gz +3 -0
- test/patient108/patient108_sax_ed_gt.nii.gz +3 -0
- test/patient108/patient108_sax_es.nii.gz +3 -0
- test/patient108/patient108_sax_es_gt.nii.gz +3 -0
- test/patient108/patient108_sax_t.nii.gz +3 -0
- test/patient109/patient109_sax_ed.nii.gz +3 -0
- test/patient109/patient109_sax_ed_gt.nii.gz +3 -0
- test/patient109/patient109_sax_es.nii.gz +3 -0
- test/patient109/patient109_sax_es_gt.nii.gz +3 -0
- test/patient109/patient109_sax_t.nii.gz +3 -0
- test/patient110/patient110_sax_ed.nii.gz +3 -0
.gitattributes
CHANGED
@@ -57,3 +57,5 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
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# Video files - compressed
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*.mp4 filter=lfs diff=lfs merge=lfs -text
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*.webm filter=lfs diff=lfs merge=lfs -text
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# Video files - compressed
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*.mp4 filter=lfs diff=lfs merge=lfs -text
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*.webm filter=lfs diff=lfs merge=lfs -text
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# Medical image files - compressed
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*.nii.gz filter=lfs diff=lfs merge=lfs -text
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.gitignore
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.idea/
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.DS_Store
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node_modules
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README.md
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-
---
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license: cc-by-nc-sa-4.0
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-
---
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---
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license: cc-by-nc-sa-4.0
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---
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# ACDC Dataset
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This is a pre-processed version of the original
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[Automated Cardiac Diagnosis Challenge (ACDC) dataset](https://www.creatis.insa-lyon.fr/Challenge/acdc/databases.html).
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Short-axis view images have been resampled to 1mm x 1mm x 10mm. Images have also been center cropped at the left
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ventricle mask center. The size of each slice is 192 x 192 pixels.
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Download the dataset using the following command:
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```bash
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from huggingface_hub import snapshot_download
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data_dir = snapshot_download(repo_id="mathpluscode/ACDC", allow_patterns=["*.nii.gz", "*.csv"], repo_type="dataset")
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```
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where `data_dir` is the directory where the dataset will be downloaded. The data structure is as follows:
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```
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train.csv
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train/
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├── patient001/
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│ ├── patient001_frame01.nii.gz
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│ ├── patient001_frame01_gt.nii.gz
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│ ├── patient001_frame12.nii.gz
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│ ├── patient001_frame12_gt.nii.gz
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├── patient002/
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├── ...
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test/
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├── patient101/
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├── patient102/
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├── ...
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```
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test.csv
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pid,pathology,height,weight,bmi,n_frames,ed_frame,es_frame,original_sax_spacing_x,original_sax_spacing_y,original_sax_spacing_z,n_slices,edv,esv,ef
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+
patient101,DCM,1.69,79.0,27.660095935016283,30,1,14,1.6406199932098389,1.6406199932098389,10.0,10,1053.46,795.8,24.458451198906467
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+
patient102,NOR,1.56,75.0,30.818540433925047,30,1,13,1.5625,1.5625,10.0,8,484.38,288.36,40.46822742474916
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+
patient103,MINF,1.75,107.0,34.93877551020408,30,1,11,1.5625,1.5625,10.0,9,970.82,778.33,19.82756844729198
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+
patient104,HCM,1.8,74.0,22.839506172839506,30,1,11,1.3671900033950806,1.3671900033950806,10.0,9,881.41,453.51,48.54721412282593
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+
patient105,HCM,1.73,84.0,28.06642386982525,30,1,10,1.4843800067901611,1.4843800067901611,10.0,10,765.81,442.5,42.21804364006738
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+
patient106,DCM,1.81,91.0,27.776929886145112,30,1,13,1.5625,1.5625,10.0,9,1409.86,1310.5,7.047508263231804
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+
patient107,NOR,1.55,47.0,19.562955254942764,30,1,10,1.3671900033950806,1.3671900033950806,10.0,9,662.57,372.59,43.76594171181913
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+
patient108,HCM,1.7,90.0,31.14186851211073,30,1,9,1.5625,1.5625,10.0,10,1046.0,458.74,56.14340344168261
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+
patient109,RV,1.8,60.0,18.51851851851852,30,1,10,1.5625,1.5625,10.0,8,888.88,568.63,36.02848528485285
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+
patient110,NOR,1.67,116.0,41.593459787012804,30,1,11,1.5625,1.5625,10.0,9,776.99,475.92,38.7482464381781
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+
patient111,HCM,1.72,80.0,27.041644131963228,15,1,7,1.40625,1.40625,10.0,6,592.97,404.48,31.787442872320693
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+
patient112,MINF,1.72,90.0,30.42184964845863,30,1,12,1.3671900033950806,1.3671900033950806,10.0,10,1150.36,727.2,36.78500643276886
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+
patient113,DCM,1.83,95.0,28.367523664486843,15,1,8,1.6826900243759155,1.6826900243759155,10.0,10,1428.11,1231.42,13.772748597797078
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+
patient114,HCM,1.72,80.0,27.041644131963228,30,1,11,1.3671900033950806,1.3671900033950806,10.0,11,1432.82,992.09,30.759620887480626
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+
patient115,MINF,1.65,92.0,33.792470156106525,30,1,13,1.3671900033950806,1.3671900033950806,10.0,10,966.06,732.28,24.19932509367948
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+
patient116,HCM,1.65,83.0,30.48668503213958,30,1,9,1.5625,1.5625,10.0,10,836.64,502.28,39.96462038630714
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+
patient117,DCM,1.8,92.0,28.39506172839506,30,1,13,1.3671900033950806,1.3671900033950806,10.0,10,1754.36,1354.95,22.76670694726281
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patient118,MINF,1.76,80.0,25.826446280991735,25,1,10,1.4843800067901611,1.4843800067901611,10.0,9,868.48,687.09,20.885915622697123
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patient119,RV,1.62,60.0,22.86236854138088,15,1,9,1.6826900243759155,1.6826900243759155,5.0,8,785.4,416.92,46.91622103386809
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patient120,MINF,1.61,55.0,21.218317194552675,25,1,8,1.40625,1.40625,10.0,9,686.36,538.98,21.47269654408765
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patient121,RV,1.83,75.0,22.395413419331717,35,1,10,1.6666699647903442,1.6666699647903442,10.0,8,956.03,545.16,42.97668483206594
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patient122,DCM,1.65,65.0,23.875114784205696,14,1,6,1.696429967880249,1.696429967880249,10.0,9,1112.03,864.94,22.219724288013808
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patient123,NOR,1.7,70.0,24.221453287197235,30,1,11,1.4843800067901611,1.4843800067901611,10.0,8,642.75,409.6,36.27382341501361
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patient124,RV,1.74,64.0,21.13885585942661,15,1,7,1.6826900243759155,1.6826900243759155,5.0,10,766.22,517.12,32.51024509931874
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patient125,NOR,1.6,46.0,17.968749999999996,15,1,7,1.6826900243759155,1.6826900243759155,5.0,8,557.95,301.47,45.968276727305316
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+
patient126,RV,1.37,35.0,18.647770259470402,15,1,7,1.6826900243759155,1.6826900243759155,5.0,8,502.11,275.92,45.04789787098444
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+
patient127,RV,1.65,54.0,19.834710743801654,18,1,7,1.6826900243759155,1.6826900243759155,5.0,10,763.34,453.09,40.64374983624598
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+
patient128,NOR,1.7,74.0,25.605536332179934,30,1,11,1.4843800067901611,1.4843800067901611,10.0,9,874.54,510.51,41.625311592379994
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patient129,RV,1.83,75.0,22.395413419331717,16,1,8,1.6517900228500366,1.6517900228500366,5.0,8,955.45,622.37,34.86106023339788
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+
patient130,NOR,1.85,95.0,27.757487216946675,30,1,11,1.3671900033950806,1.3671900033950806,10.0,10,1076.56,635.85,40.93687300289812
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+
patient131,DCM,1.64,64.0,23.795359904818564,25,1,9,1.40625,1.40625,10.0,10,1188.25,1030.5,13.27582579423522
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patient132,DCM,1.63,80.0,30.11027889645828,30,1,15,1.3671900033950806,1.3671900033950806,10.0,10,1291.22,1163.6,9.883675903409188
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+
patient133,DCM,1.85,121.0,35.35427319211102,14,1,10,1.5625,1.5625,10.0,10,1697.05,1494.18,11.954273592410352
|
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+
patient134,HCM,1.85,104.0,30.38714390065741,35,1,15,1.4453125,1.4453125,10.0,11,707.85,466.04,34.16119234301052
|
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+
patient135,MINF,1.84,95.0,28.060018903591683,20,1,10,1.9531199932098389,1.9531199932098389,10.0,10,1459.61,1202.5,17.61497934379731
|
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+
patient136,DCM,1.67,89.0,31.912223457277065,24,1,12,1.6406199932098389,1.6406199932098389,10.0,10,1284.49,966.95,24.721095532078877
|
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+
patient137,MINF,1.7,68.0,23.529411764705884,30,1,11,1.3671900033950806,1.3671900033950806,10.0,9,1013.12,767.86,24.208385975994943
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+
patient138,HCM,1.74,90.0,29.72651605231867,30,1,10,1.3671900033950806,1.3671900033950806,10.0,9,884.75,659.14,25.499858717151742
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+
patient139,NOR,1.75,75.0,24.489795918367346,15,1,8,1.6826900243759155,1.6826900243759155,5.0,8,734.38,401.77,45.29126610201803
|
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+
patient140,RV,1.65,68.0,24.977043158861342,15,1,9,1.6826900243759155,1.6826900243759155,5.0,10,1032.18,610.25,40.87756011548373
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+
patient141,RV,1.7,75.0,25.95155709342561,19,1,11,1.3671900033950806,1.3671900033950806,10.0,10,891.3,464.51,47.88398967799843
|
43 |
+
patient142,HCM,1.6,98.0,38.28124999999999,30,1,12,1.3671900033950806,1.3671900033950806,10.0,8,710.98,401.91,43.470983712622015
|
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+
patient143,MINF,1.61,85.0,32.79194475521777,30,1,12,1.3671900033950806,1.3671900033950806,10.0,10,1225.5,978.31,20.17054263565892
|
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+
patient144,NOR,1.57,88.0,35.70124548663232,25,1,9,1.40625,1.40625,10.0,8,585.18,317.16,45.801291910181476
|
46 |
+
patient145,MINF,1.71,80.0,27.358845456721728,30,1,13,1.7578099966049194,1.7578099966049194,10.0,10,1171.15,1049.21,10.411988216710075
|
47 |
+
patient146,HCM,1.7,172.0,59.51557093425606,30,1,10,1.4843800067901611,1.4843800067901611,10.0,9,875.71,478.15,45.39859085770404
|
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+
patient147,RV,1.72,104.0,35.154137371552196,19,1,9,1.736109972000122,1.736109972000122,5.0,8,851.49,510.16,40.08620183443141
|
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+
patient148,MINF,1.7,70.0,24.221453287197235,35,1,10,1.4843800067901611,1.4843800067901611,10.0,8,744.14,603.9,18.845916091058136
|
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+
patient149,DCM,1.73,70.0,23.38868655818771,25,1,12,1.40625,1.40625,10.0,10,1080.53,721.64,33.21425596697917
|
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+
patient150,NOR,1.58,56.0,22.432302515622492,30,1,12,1.3671900033950806,1.3671900033950806,10.0,8,630.56,339.33,46.18592996701344
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test/patient101/patient101_sax_ed.nii.gz
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version https://git-lfs.github.com/spec/v1
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oid sha256:caa500d2927b4e6991c9c9497f6304066f91e1987f07d8efba0d3f6c7c825b59
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size 297467
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test/patient101/patient101_sax_ed_gt.nii.gz
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version https://git-lfs.github.com/spec/v1
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oid sha256:8a80c0899b0942d32cd22b3d9bf6241e2997009cde9278a05dc2a7ece756e6ef
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size 3443
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test/patient101/patient101_sax_es.nii.gz
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version https://git-lfs.github.com/spec/v1
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oid sha256:493c4aad64df8019012d8231e8bd9bbedde592ad6fa37398d7e38eac07b45031
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size 287372
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test/patient101/patient101_sax_es_gt.nii.gz
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version https://git-lfs.github.com/spec/v1
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oid sha256:e5ec5f03b835a5abfe791a6ed8194e5b9ec3550b5d72966df04ac88234771289
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size 2898
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test/patient101/patient101_sax_t.nii.gz
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version https://git-lfs.github.com/spec/v1
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size 8714445
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test/patient102/patient102_sax_ed.nii.gz
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version https://git-lfs.github.com/spec/v1
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size 263193
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test/patient102/patient102_sax_ed_gt.nii.gz
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version https://git-lfs.github.com/spec/v1
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size 2271
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test/patient102/patient102_sax_es.nii.gz
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