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  1. .gitattributes +2 -0
  2. .gitignore +3 -0
  3. README.md +35 -3
  4. test.csv +51 -0
  5. test/patient101/patient101_sax_ed.nii.gz +3 -0
  6. test/patient101/patient101_sax_ed_gt.nii.gz +3 -0
  7. test/patient101/patient101_sax_es.nii.gz +3 -0
  8. test/patient101/patient101_sax_es_gt.nii.gz +3 -0
  9. test/patient101/patient101_sax_t.nii.gz +3 -0
  10. test/patient102/patient102_sax_ed.nii.gz +3 -0
  11. test/patient102/patient102_sax_ed_gt.nii.gz +3 -0
  12. test/patient102/patient102_sax_es.nii.gz +3 -0
  13. test/patient102/patient102_sax_es_gt.nii.gz +3 -0
  14. test/patient102/patient102_sax_t.nii.gz +3 -0
  15. test/patient103/patient103_sax_ed.nii.gz +3 -0
  16. test/patient103/patient103_sax_ed_gt.nii.gz +3 -0
  17. test/patient103/patient103_sax_es.nii.gz +3 -0
  18. test/patient103/patient103_sax_es_gt.nii.gz +3 -0
  19. test/patient103/patient103_sax_t.nii.gz +3 -0
  20. test/patient104/patient104_sax_ed.nii.gz +3 -0
  21. test/patient104/patient104_sax_ed_gt.nii.gz +3 -0
  22. test/patient104/patient104_sax_es.nii.gz +3 -0
  23. test/patient104/patient104_sax_es_gt.nii.gz +3 -0
  24. test/patient104/patient104_sax_t.nii.gz +3 -0
  25. test/patient105/patient105_sax_ed.nii.gz +3 -0
  26. test/patient105/patient105_sax_ed_gt.nii.gz +3 -0
  27. test/patient105/patient105_sax_es.nii.gz +3 -0
  28. test/patient105/patient105_sax_es_gt.nii.gz +3 -0
  29. test/patient105/patient105_sax_t.nii.gz +3 -0
  30. test/patient106/patient106_sax_ed.nii.gz +3 -0
  31. test/patient106/patient106_sax_ed_gt.nii.gz +3 -0
  32. test/patient106/patient106_sax_es.nii.gz +3 -0
  33. test/patient106/patient106_sax_es_gt.nii.gz +3 -0
  34. test/patient106/patient106_sax_t.nii.gz +3 -0
  35. test/patient107/patient107_sax_ed.nii.gz +3 -0
  36. test/patient107/patient107_sax_ed_gt.nii.gz +3 -0
  37. test/patient107/patient107_sax_es.nii.gz +3 -0
  38. test/patient107/patient107_sax_es_gt.nii.gz +3 -0
  39. test/patient107/patient107_sax_t.nii.gz +3 -0
  40. test/patient108/patient108_sax_ed.nii.gz +3 -0
  41. test/patient108/patient108_sax_ed_gt.nii.gz +3 -0
  42. test/patient108/patient108_sax_es.nii.gz +3 -0
  43. test/patient108/patient108_sax_es_gt.nii.gz +3 -0
  44. test/patient108/patient108_sax_t.nii.gz +3 -0
  45. test/patient109/patient109_sax_ed.nii.gz +3 -0
  46. test/patient109/patient109_sax_ed_gt.nii.gz +3 -0
  47. test/patient109/patient109_sax_es.nii.gz +3 -0
  48. test/patient109/patient109_sax_es_gt.nii.gz +3 -0
  49. test/patient109/patient109_sax_t.nii.gz +3 -0
  50. test/patient110/patient110_sax_ed.nii.gz +3 -0
.gitattributes CHANGED
@@ -57,3 +57,5 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
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  # Video files - compressed
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  *.mp4 filter=lfs diff=lfs merge=lfs -text
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  *.webm filter=lfs diff=lfs merge=lfs -text
 
 
 
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  # Video files - compressed
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  *.mp4 filter=lfs diff=lfs merge=lfs -text
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  *.webm filter=lfs diff=lfs merge=lfs -text
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+ # Medical image files - compressed
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+ *.nii.gz filter=lfs diff=lfs merge=lfs -text
.gitignore ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ .idea/
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+ .DS_Store
3
+ node_modules
README.md CHANGED
@@ -1,3 +1,35 @@
1
- ---
2
- license: cc-by-nc-sa-4.0
3
- ---
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ ---
2
+ license: cc-by-nc-sa-4.0
3
+ ---
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+
5
+ # ACDC Dataset
6
+
7
+ This is a pre-processed version of the original
8
+ [Automated Cardiac Diagnosis Challenge (ACDC) dataset](https://www.creatis.insa-lyon.fr/Challenge/acdc/databases.html).
9
+ Short-axis view images have been resampled to 1mm x 1mm x 10mm. Images have also been center cropped at the left
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+ ventricle mask center. The size of each slice is 192 x 192 pixels.
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+
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+ Download the dataset using the following command:
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+
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+ ```bash
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+ from huggingface_hub import snapshot_download
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+ data_dir = snapshot_download(repo_id="mathpluscode/ACDC", allow_patterns=["*.nii.gz", "*.csv"], repo_type="dataset")
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+ ```
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+
19
+ where `data_dir` is the directory where the dataset will be downloaded. The data structure is as follows:
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+
21
+ ```
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+ train.csv
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+ train/
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+ ├── patient001/
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+ │ ├── patient001_frame01.nii.gz
26
+ │ ├── patient001_frame01_gt.nii.gz
27
+ │ ├── patient001_frame12.nii.gz
28
+ │ ├── patient001_frame12_gt.nii.gz
29
+ ├── patient002/
30
+ ├── ...
31
+ test/
32
+ ├── patient101/
33
+ ├── patient102/
34
+ ├── ...
35
+ ```
test.csv ADDED
@@ -0,0 +1,51 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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