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Browse files- README.md +4 -0
- checkpoints/epoch=19.ckpt +3 -0
- configuration +23 -0
README.md
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# Ambient Protein Diffusion
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By [Giannis Daras*](mailto:[email protected]), [Jeffrey Ouyang-Zhang*](mailto:[email protected]), [Krithika Ravishankar](mailto:[email protected]), [William Daspit](mailto:[email protected]), [Costis Daskalakis](mailto:[email protected]), [Qiang Liu](mailto:[email protected]), [Adam Klivans](https://www.cs.utexas.edu/users/klivans/), [Daniel J. Diaz](http://danny305.github.io)
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checkpoints/epoch=19.ckpt
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version https://git-lfs.github.com/spec/v1
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oid sha256:1d19a26c10f7784460ed9bf7d12ea1bf2978cb72d8358ac026b868609984d3e3
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size 201341841
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configuration
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name improved_genie2
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seed 100
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numPairTransformLayers 8
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warmupEpoches 2
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numEpoches 20
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motifProbability 1.0
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logEverySteps 1000
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checkpointEveryEpoches 1
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batchSize 1
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accum_grad 4
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learningRate 1e-5
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ambient False
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dataDirectory /scratch/projects/cgai/ambient_proteins/cluster/datasets/1300K/plddt70/afdb/repr/cluster_alntype1_tm50_alncov75_021425_021425_cluster
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minimumNumResidues 20
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maximumNumResidues 768
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min_plddt 70
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resume runs/baseline_pair8_cluster_repr_tm50_plddt70_L512/version_0/checkpoints/epoch=49.ckpt
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