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README.md
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# DeepShape
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DeepShape is built upon DeeperDeepSEA, a PyTorch-based deep learning model originally designed to predict chromatin features from DNA sequence alone as implemented in [Selene](https://www.nature.com/articles/s41592-019-0360-8).
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https://github.com/ni-lab/DeepShape
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---
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model-index:
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- name: DeepShape
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results:
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- task:
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name: TF/DNase/Histone Binding Prediction
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type: binary-classification
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dataset:
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name: ENCODE + Roadmap Epigenomics (919 targets)
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type: genomics
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split: "held-out chromosomes (validation: chr6/7, test: chr8/9)"
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metrics:
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- name: AUROC (TF)
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type: auc
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value: 0.948
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- name: AUPRC (TF)
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type: average precision
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value: 0.353
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- name: AUROC (DNase)
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type: auc
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value: 0.907
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- name: AUPRC (DNase)
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type: average precision
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value: 0.472
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- name: AUROC (Histone)
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type: auc
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value: 0.850
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- name: AUPRC (Histone)
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type: average precision
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value: 0.367
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- name: AUROC (average)
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type: auc
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value: 0.929
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- name: AUPRC (average)
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type: average precision
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value: 0.379
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---
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# DeepShape
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DeepShape is built upon DeeperDeepSEA, a PyTorch-based deep learning model originally designed to predict chromatin features from DNA sequence alone as implemented in [Selene](https://www.nature.com/articles/s41592-019-0360-8).
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https://github.com/ni-lab/DeepShape
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## License
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DeepShape is licensed under the MIT License. Portions of this software are derived from [Selene](https://www.nature.com/articles/s41592-019-0360-8), which is licensed under the Clear BSD License.
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See the [LICENSE](./LICENSE) file for full details.
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