aksell commited on
Commit
db81f50
·
1 Parent(s): ff8eaa8

Update text and title

Browse files
Files changed (1) hide show
  1. hexviz/app.py +12 -2
hexviz/app.py CHANGED
@@ -5,12 +5,18 @@ from stmol import showmol
5
 
6
  from hexviz.attention import Model, ModelType, get_attention_pairs
7
 
8
- st.title("pLM Attention Visualization")
 
 
 
 
 
 
9
 
10
  # Define list of model types
11
  models = [
12
- Model(name=ModelType.ZymCTRL, layers=36, heads=16),
13
  Model(name=ModelType.TAPE_BERT, layers=12, heads=12),
 
14
  # Model(name=ModelType.PROT_T5, layers=24, heads=32),
15
  ]
16
 
@@ -42,3 +48,7 @@ def get_3dview(pdb):
42
 
43
  xyzview = get_3dview(pdb_id)
44
  showmol(xyzview, height=500, width=800)
 
 
 
 
 
5
 
6
  from hexviz.attention import Model, ModelType, get_attention_pairs
7
 
8
+ st.title("Attention Visualization on proteins")
9
+
10
+ """
11
+ Visualize attention weights on protein structures for the protein language models ZymCTRL and TAPE-BERT.
12
+ Pick a PDB ID, layer and head to visualize attention.
13
+ """
14
+
15
 
16
  # Define list of model types
17
  models = [
 
18
  Model(name=ModelType.TAPE_BERT, layers=12, heads=12),
19
+ Model(name=ModelType.ZymCTRL, layers=36, heads=16),
20
  # Model(name=ModelType.PROT_T5, layers=24, heads=32),
21
  ]
22
 
 
48
 
49
  xyzview = get_3dview(pdb_id)
50
  showmol(xyzview, height=500, width=800)
51
+
52
+ """
53
+ More models will be added soon.
54
+ """