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hexviz

Commit History

Allow changing viewer width
739d26f

aksell commited on

Add options to label, highlight and show ligand
a2eb24d

aksell commited on

Reduce viewer width for huggingface spaces compatability
9af4b80

aksell commited on

Add test view of grid of attention on structure
ee057cd

aksell commited on

Set width and height in py3Dmol too
6fb3f0b

aksell commited on

Calculate pct of total attention
db42d48

aksell commited on

Fix bug in column vise attention calc
53a7dc6

aksell commited on

Calculate top residue using attention to residue
725c921

aksell commited on

Fix internal link between views
0a6b613

aksell commited on

Update documentation
cdcf3af

aksell commited on

Fix T5 bug with tokens returned
b65afcb

aksell commited on

Allow setting color
6d4dc1d

aksell commited on

Fix vmin and vmax in heatmaps
d35acfc

aksell commited on

Reword checkbox to hide attention to tokens
cea9292

aksell commited on

Fix removal of special tokens for ZymCTRL
2e81150

aksell commited on

Show EC number in single attention plot and add option to show special tokens
6d3f484

aksell commited on

Return sequence of tokens from get_attention
d3faba1

aksell commited on

Add ruff, run ruff and black
a71a737

aksell commited on

Fix links in documentation
7a18fac

aksell commited on

Fix residue indexing error
7c0cc4e

aksell commited on

Show chain in table of top residues
01ba5a1

aksell commited on

Don't add EC number chars to top residues
528cd6e

aksell commited on

Catch potential KeyError from chain
14646a1

aksell commited on

Visualize EC tags for multiple chains
b6e0c9a

aksell commited on

WIP visualize EC number and attention to it
9f086ee

aksell commited on

Remove unused attention pair values
f7e76de

aksell commited on

Fix links in documentation
b09c0bf

aksell commited on

Remove debug print
b5726b3

aksell commited on

Remove attention to special tokens in find interesting heads
491bdcd

aksell commited on

Fix reomval of special tokens for T5
1ce487e

aksell commited on

Fix bug in plot of single head
703d569

aksell commited on

Open links to app in current iframe
48c14d0

aksell commited on

Don't remove special tokens in identify interesting heads
e13695f

aksell commited on

Add plot of single head
214c50a

aksell commited on

Test write shape of tensor
1804445

aksell commited on

Also validate sequences in second view
ca475ac

aksell commited on

Add ProtT5
852aa1f

aksell commited on

Remove docks from main page and list supported models
c663b1c

aksell commited on

Format with Black
a2cfd88

aksell commited on

Specify default theme
8cef26d

aksell commited on

Add documentation page
611049a

aksell commited on

Rename subpage to ensure correct ordering in sidebar
3c4fdda

aksell commited on

Don't zero pad residue IDs in top attention table
5166e2c

aksell commited on

Update description text
a789c1f

aksell commited on

Fix ProtBert tensors stored on different devices
d7eabb7

aksell commited on

Ignore FASTA headers in sequence input
6d2a9ed

aksell commited on

Cache prot bert tokenizer and model separately
dacbc43

aksell commited on

Remove print
695df3e

aksell commited on

Use gpu device for prot bert
2e9b6cc

aksell commited on

Don't hash tokenizer for ZymCTRL
b42d000

aksell commited on