Spaces:
Sleeping
Sleeping
Update app.py
Browse files
app.py
CHANGED
|
@@ -5,24 +5,8 @@ import zipfile
|
|
| 5 |
import os
|
| 6 |
import subprocess
|
| 7 |
|
| 8 |
-
|
| 9 |
-
|
| 10 |
-
# Command to make the script executable
|
| 11 |
-
command = "chmod +x install.sh"
|
| 12 |
-
|
| 13 |
-
try:
|
| 14 |
-
subprocess.run(command, shell=True, check=True)
|
| 15 |
-
print("Script 'install.sh' has been made executable.")
|
| 16 |
-
except subprocess.CalledProcessError as e:
|
| 17 |
-
print(f"Error while making the script executable: {e}")
|
| 18 |
-
|
| 19 |
-
command = "./install.sh"
|
| 20 |
-
|
| 21 |
-
try:
|
| 22 |
-
subprocess.run(command, shell=True, check=True)
|
| 23 |
-
print("Script 'install.sh' has been made executable.")
|
| 24 |
-
except subprocess.CalledProcessError as e:
|
| 25 |
-
print(f"Error while making the script executable: {e}")
|
| 26 |
|
| 27 |
# Streamlit app title
|
| 28 |
st.title("DICOM Image Viewer")
|
|
@@ -50,6 +34,24 @@ if uploaded_zip_file is not None:
|
|
| 50 |
|
| 51 |
st.write(f"Temporary directory path: {temp_dir}")
|
| 52 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 53 |
|
| 54 |
with zipfile.ZipFile(uploaded_zip_file, "r") as zip_ref:
|
| 55 |
zip_ref.extractall(temp_dir)
|
|
@@ -58,22 +60,6 @@ if uploaded_zip_file is not None:
|
|
| 58 |
dicom_files = [os.path.join(temp_dir, f) for f in os.listdir(temp_dir) if f.endswith(".dcm")]
|
| 59 |
dicom_files.sort() # Sort the files
|
| 60 |
|
| 61 |
-
command = "chmod +x inference.sh"
|
| 62 |
-
|
| 63 |
-
try:
|
| 64 |
-
subprocess.run(command, shell=True, check=True)
|
| 65 |
-
print("Script 'inference.sh' has started running.")
|
| 66 |
-
except subprocess.CalledProcessError as e:
|
| 67 |
-
print(f"Error while making the script executable: {e}")
|
| 68 |
-
|
| 69 |
-
command = "./inference.sh"
|
| 70 |
-
|
| 71 |
-
try:
|
| 72 |
-
subprocess.run(command, shell=True, check=True)
|
| 73 |
-
print("Script 'inference.sh' has started running.")
|
| 74 |
-
except subprocess.CalledProcessError as e:
|
| 75 |
-
print(f"Error while making the script executable: {e}")
|
| 76 |
-
|
| 77 |
if len(dicom_files) == 0:
|
| 78 |
st.error("No DICOM files found in the ZIP archive.")
|
| 79 |
else:
|
|
@@ -92,4 +78,4 @@ if uploaded_zip_file is not None:
|
|
| 92 |
os.remove(file)
|
| 93 |
os.rmdir(temp_dir)
|
| 94 |
|
| 95 |
-
st.write("Upload a ZIP file containing DICOM slices to view the images.")
|
|
|
|
| 5 |
import os
|
| 6 |
import subprocess
|
| 7 |
|
| 8 |
+
# Flag to track if subprocess commands have been executed
|
| 9 |
+
subprocess_executed = False
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 10 |
|
| 11 |
# Streamlit app title
|
| 12 |
st.title("DICOM Image Viewer")
|
|
|
|
| 34 |
|
| 35 |
st.write(f"Temporary directory path: {temp_dir}")
|
| 36 |
|
| 37 |
+
if not subprocess_executed:
|
| 38 |
+
# Execute the subprocess commands only once
|
| 39 |
+
command = "chmod +x install.sh"
|
| 40 |
+
try:
|
| 41 |
+
subprocess.run(command, shell=True, check=True)
|
| 42 |
+
print("Script 'install.sh' has been made executable.")
|
| 43 |
+
except subprocess.CalledProcessError as e:
|
| 44 |
+
print(f"Error while making the script executable: {e}")
|
| 45 |
+
|
| 46 |
+
command = "./install.sh"
|
| 47 |
+
try:
|
| 48 |
+
subprocess.run(command, shell=True, check=True)
|
| 49 |
+
print("Script 'install.sh' has started running.")
|
| 50 |
+
except subprocess.CalledProcessError as e:
|
| 51 |
+
print(f"Error while running the script: {e}")
|
| 52 |
+
|
| 53 |
+
# Set the flag to indicate that subprocess commands have been executed
|
| 54 |
+
subprocess_executed = True
|
| 55 |
|
| 56 |
with zipfile.ZipFile(uploaded_zip_file, "r") as zip_ref:
|
| 57 |
zip_ref.extractall(temp_dir)
|
|
|
|
| 60 |
dicom_files = [os.path.join(temp_dir, f) for f in os.listdir(temp_dir) if f.endswith(".dcm")]
|
| 61 |
dicom_files.sort() # Sort the files
|
| 62 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 63 |
if len(dicom_files) == 0:
|
| 64 |
st.error("No DICOM files found in the ZIP archive.")
|
| 65 |
else:
|
|
|
|
| 78 |
os.remove(file)
|
| 79 |
os.rmdir(temp_dir)
|
| 80 |
|
| 81 |
+
st.write("Upload a ZIP file containing DICOM slices to view the images.")
|