Spaces:
Running
Running
push new db or demo version
Browse files- src/app.py +15 -5
- src/service.py +1 -1
src/app.py
CHANGED
|
@@ -113,12 +113,22 @@ class App:
|
|
| 113 |
gr.Markdown("""
|
| 114 |
# 🧪 Chem-MRL: Molecular Similarity Search Demo
|
| 115 |
|
| 116 |
-
Use the JSME editor to draw a molecule or input a SMILES string
|
| 117 |
-
The backend encodes the molecule using the Chem-MRL model to produce a vector embedding
|
| 118 |
-
Similarity search is performed via an HNSW-indexed Redis vector store to retrieve closest matches
|
| 119 |
-
|
| 120 |
-
[Model Repo](https://github.com/emapco/chem-mrl) | [Demo Repo](https://github.com/emapco/chem-mrl-demo)
|
| 121 |
""")
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 122 |
with gr.Tab("🔬 Molecular Search"), gr.Row():
|
| 123 |
with gr.Column(scale=1):
|
| 124 |
gr.Markdown("### Molecule Input")
|
|
|
|
| 113 |
gr.Markdown("""
|
| 114 |
# 🧪 Chem-MRL: Molecular Similarity Search Demo
|
| 115 |
|
| 116 |
+
Use the JSME editor to draw a molecule or input a SMILES string.<br/>
|
| 117 |
+
The backend encodes the molecule using the Chem-MRL model to produce a vector embedding.<br/>
|
| 118 |
+
Similarity search is performed via an HNSW-indexed Redis vector store to retrieve closest matches.
|
|
|
|
|
|
|
| 119 |
""")
|
| 120 |
+
gr.HTML(
|
| 121 |
+
"""
|
| 122 |
+
The Redis database indexes a curated subset of molecules from <a href="https://isomerdesign.com/pihkal/home">Isomer Design</a>
|
| 123 |
+
<a href="https://creativecommons.org/licenses/by-nc-sa/4.0/">
|
| 124 |
+
<img src="https://mirrors.creativecommons.org/presskit/buttons/80x15/svg/by-nc-sa.svg" alt="License: CC BY-NC-SA 4.0"
|
| 125 |
+
style="display:inline; height:15px; vertical-align:middle; margin-left:4px;"/>
|
| 126 |
+
</a>""", # noqa: E501
|
| 127 |
+
padding=False,
|
| 128 |
+
)
|
| 129 |
+
gr.Markdown(
|
| 130 |
+
"[Model Repo](https://github.com/emapco/chem-mrl) | [Demo Repo](https://github.com/emapco/chem-mrl-demo)"
|
| 131 |
+
)
|
| 132 |
with gr.Tab("🔬 Molecular Search"), gr.Row():
|
| 133 |
with gr.Column(scale=1):
|
| 134 |
gr.Markdown("### Molecule Input")
|
src/service.py
CHANGED
|
@@ -92,7 +92,7 @@ class MolecularEmbeddingService:
|
|
| 92 |
|
| 93 |
def _initialize_datastore(self):
|
| 94 |
self.__create_hnsw_index()
|
| 95 |
-
self.__populate_sample_data(DATASET_SMILES)
|
| 96 |
self.__populate_sample_data(ISOMER_DESIGN_SUBSET)
|
| 97 |
|
| 98 |
def __create_hnsw_index(self):
|
|
|
|
| 92 |
|
| 93 |
def _initialize_datastore(self):
|
| 94 |
self.__create_hnsw_index()
|
| 95 |
+
# self.__populate_sample_data(DATASET_SMILES)
|
| 96 |
self.__populate_sample_data(ISOMER_DESIGN_SUBSET)
|
| 97 |
|
| 98 |
def __create_hnsw_index(self):
|