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  1. README.md +13 -12
  2. app.py +15 -58
  3. requirements.txt +4 -1
README.md CHANGED
@@ -1,13 +1,14 @@
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- ---
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- title: Medical Chatbot Using OpenbioLLM
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- emoji: 💬
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- colorFrom: yellow
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- colorTo: purple
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- sdk: gradio
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- sdk_version: 5.0.1
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- app_file: app.py
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- pinned: false
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- license: other
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- ---
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- An example chatbot using [Gradio](https://gradio.app), [`huggingface_hub`](https://huggingface.co/docs/huggingface_hub/v0.22.2/en/index), and the [Hugging Face Inference API](https://huggingface.co/docs/api-inference/index).
 
 
 
 
 
 
 
 
 
 
 
 
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+ # 🧬 OpenBioLLM Chatbot on Hugging Face
 
 
 
 
 
 
 
 
 
 
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+ This Space uses [OpenBioLLM-8B](https://huggingface.co/aaditya/Llama3-OpenBioLLM-8B), a biomedical large language model based on Llama 3, to answer medical and life science-related questions interactively using Gradio.
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+
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+ ## 🚀 Features
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+ - Biomedical-aware chatbot
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+ - Powered by Hugging Face Transformers
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+ - Runs in a Gradio ChatInterface
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+
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+ ## 🛠 How to Use
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+ 1. Clone this Space
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+ 2. Add `app.py` and `requirements.txt`
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+ 3. Select a GPU runtime (free or Pro)
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+ 4. Chat away!
app.py CHANGED
@@ -1,64 +1,21 @@
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  import gradio as gr
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- from huggingface_hub import InferenceClient
 
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- """
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- For more information on `huggingface_hub` Inference API support, please check the docs: https://huggingface.co/docs/huggingface_hub/v0.22.2/en/guides/inference
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- """
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- client = InferenceClient("HuggingFaceH4/zephyr-7b-beta")
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-
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- def respond(
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- message,
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- history: list[tuple[str, str]],
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- system_message,
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- max_tokens,
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- temperature,
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- top_p,
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- ):
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- messages = [{"role": "system", "content": system_message}]
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-
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- for val in history:
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- if val[0]:
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- messages.append({"role": "user", "content": val[0]})
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- if val[1]:
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- messages.append({"role": "assistant", "content": val[1]})
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-
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- messages.append({"role": "user", "content": message})
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-
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- response = ""
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-
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- for message in client.chat_completion(
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- messages,
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- max_tokens=max_tokens,
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- stream=True,
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- temperature=temperature,
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- top_p=top_p,
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- ):
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- token = message.choices[0].delta.content
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-
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- response += token
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- yield response
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-
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-
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- """
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- For information on how to customize the ChatInterface, peruse the gradio docs: https://www.gradio.app/docs/chatinterface
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- """
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- demo = gr.ChatInterface(
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- respond,
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- additional_inputs=[
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- gr.Textbox(value="You are a friendly Chatbot.", label="System message"),
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- gr.Slider(minimum=1, maximum=2048, value=512, step=1, label="Max new tokens"),
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- gr.Slider(minimum=0.1, maximum=4.0, value=0.7, step=0.1, label="Temperature"),
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- gr.Slider(
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- minimum=0.1,
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- maximum=1.0,
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- value=0.95,
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- step=0.05,
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- label="Top-p (nucleus sampling)",
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- ),
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- ],
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  )
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- if __name__ == "__main__":
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- demo.launch()
 
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  import gradio as gr
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+ from transformers import AutoTokenizer, AutoModelForCausalLM, pipeline
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+ import torch
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+ model_id = "aaditya/Llama3-OpenBioLLM-8B"
 
 
 
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+ tokenizer = AutoTokenizer.from_pretrained(model_id)
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+ model = AutoModelForCausalLM.from_pretrained(
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+ model_id,
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+ device_map="auto",
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+ torch_dtype=torch.float16
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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  )
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+ chat_pipeline = pipeline("text-generation", model=model, tokenizer=tokenizer)
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+
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+ def chatbot(message, history=[]):
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+ prompt = f"[INST] {message} [/INST]"
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+ response = chat_pipeline(prompt, max_new_tokens=256, do_sample=True, temperature=0.7)[0]['generated_text']
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+ return response.replace(prompt, "").strip()
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+ gr.ChatInterface(fn=chatbot, title="🩺 OpenBioLLM Chatbot", description="Ask me anything biomedical!").launch()
 
requirements.txt CHANGED
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- huggingface_hub==0.25.2
 
 
 
 
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+ transformers
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+ gradio
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+ torch
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+ accelerate