fatmacankara commited on
Commit
3fc8ecf
·
1 Parent(s): fc0ba60

Update code/pdb_featureVector.py

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Files changed (1) hide show
  1. code/pdb_featureVector.py +1 -1
code/pdb_featureVector.py CHANGED
@@ -240,7 +240,6 @@ def pdb(input_set, mode, impute):
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  st.write('response2', response)
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  # Step 2: Parse the PDB file from memory
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  pdb_data = response.text
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- st.write('pdb_data', pdb_data)
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  pdb_parser = PDBParser(QUIET=True) # QUIET=True suppresses warnings
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  pdb_file_content = StringIO(pdb_data)
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  structure = pdb_parser.get_structure(pdb_code, pdb_file_content)
@@ -249,6 +248,7 @@ def pdb(input_set, mode, impute):
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  st.write(model)
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  for pp in ppb.build_peptides(model):
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  sequence = pp.get_sequence()
 
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  for chain in model:
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  chain_id = chain.get_id()
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  # Extract UniProt ID if available in the chain's annotations
 
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  st.write('response2', response)
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  # Step 2: Parse the PDB file from memory
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  pdb_data = response.text
 
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  pdb_parser = PDBParser(QUIET=True) # QUIET=True suppresses warnings
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  pdb_file_content = StringIO(pdb_data)
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  structure = pdb_parser.get_structure(pdb_code, pdb_file_content)
 
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  st.write(model)
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  for pp in ppb.build_peptides(model):
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  sequence = pp.get_sequence()
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+ st.write(sequence)
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  for chain in model:
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  chain_id = chain.get_id()
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  # Extract UniProt ID if available in the chain's annotations