fatmacankara commited on
Commit
5a1ea29
·
1 Parent(s): 96c038c

Update code/pdb_featureVector.py

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Files changed (1) hide show
  1. code/pdb_featureVector.py +2 -0
code/pdb_featureVector.py CHANGED
@@ -305,6 +305,8 @@ def pdb(input_set, mode, impute):
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  resolution_method = parser.get_structure(search, file)
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  for record in SeqIO.parse(file, "pdb-seqres"):
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  if record.dbxrefs[0].split(':')[0] == 'UNP':
 
 
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  pdb_fasta.at[index, 'pdbID'] = record.id.split(':')[0]
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  pdb_fasta.at[index, 'chain'] = record.id.split(':')[1]
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  pdb_fasta.at[index, 'pdbSequence'] = str(record.seq)
 
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  resolution_method = parser.get_structure(search, file)
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  for record in SeqIO.parse(file, "pdb-seqres"):
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  if record.dbxrefs[0].split(':')[0] == 'UNP':
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+ st.write(record.id.split(':')[0])
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+ st.write(record.id.split(':')[1])
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  pdb_fasta.at[index, 'pdbID'] = record.id.split(':')[0]
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  pdb_fasta.at[index, 'chain'] = record.id.split(':')[1]
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  pdb_fasta.at[index, 'pdbSequence'] = str(record.seq)