Spaces:
Sleeping
Sleeping
Commit
·
86c44a0
1
Parent(s):
52c40ac
Update code/pdb_featureVector.py
Browse files
code/pdb_featureVector.py
CHANGED
@@ -265,21 +265,26 @@ def pdb(input_set, mode, impute):
|
|
265 |
# st.write('ERROR')
|
266 |
|
267 |
|
268 |
-
|
269 |
-
from huggingface_hub import
|
270 |
api = HfApi()
|
271 |
-
st.write('api',
|
|
|
272 |
api.upload_file(
|
273 |
path_or_fileobj=response.content,
|
274 |
path_in_repo="out_files/pdb/pdb_structures/",
|
275 |
repo_id="HUBioDataLab/ASCARIS",
|
276 |
repo_type="space")
|
277 |
st.write(f"PDB file {search}.pdb downloaded successfully.")
|
278 |
-
|
279 |
|
280 |
# Aug 23
|
281 |
content = response.content.decode("utf-8") # Decode the content if it's not already a string
|
|
|
|
|
282 |
parsed_records = list(SeqIO.parse(content, "fasta"))
|
|
|
|
|
283 |
for rec in parsed_records:
|
284 |
st.write(rec)
|
285 |
st.write(rec.id)
|
|
|
265 |
# st.write('ERROR')
|
266 |
|
267 |
|
268 |
+
"""
|
269 |
+
from huggingface_hub import Hf
|
270 |
api = HfApi()
|
271 |
+
st.write('api', API)
|
272 |
+
|
273 |
api.upload_file(
|
274 |
path_or_fileobj=response.content,
|
275 |
path_in_repo="out_files/pdb/pdb_structures/",
|
276 |
repo_id="HUBioDataLab/ASCARIS",
|
277 |
repo_type="space")
|
278 |
st.write(f"PDB file {search}.pdb downloaded successfully.")
|
279 |
+
"""
|
280 |
|
281 |
# Aug 23
|
282 |
content = response.content.decode("utf-8") # Decode the content if it's not already a string
|
283 |
+
st.write('Content')
|
284 |
+
st.write(content)
|
285 |
parsed_records = list(SeqIO.parse(content, "fasta"))
|
286 |
+
st.write('parsed_records')
|
287 |
+
st.write(parsed_records)
|
288 |
for rec in parsed_records:
|
289 |
st.write(rec)
|
290 |
st.write(rec.id)
|