fatmacankara commited on
Commit
a802398
·
1 Parent(s): 8b86e87

Update code/alphafold_featureVector.py

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Files changed (1) hide show
  1. code/alphafold_featureVector.py +6 -0
code/alphafold_featureVector.py CHANGED
@@ -309,6 +309,7 @@ from standard import *
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  from uniprotSequenceMatch import uniprotSequenceMatch
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  from process_input import clean_data
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  from alphafold_model import *
 
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  def alphafold(input_set, mode, impute):
@@ -346,6 +347,8 @@ def alphafold(input_set, mode, impute):
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  ## Physicochemical properties
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  print('Adding physicochemical properties...\n')
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  data = add_physicochemical(data)
 
 
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  ## Domains
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  print('Adding domains\n')
@@ -376,6 +379,9 @@ def alphafold(input_set, mode, impute):
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  not_match_in_uniprot[key] = ''
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  not_match_in_uniprot = not_match_in_uniprot.rename(columns=change_names)
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  uniprot_matched = add_annotations(uniprot_matched)
 
 
 
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  for w in uniprot_matched.index:
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  for q in annotation_list:
 
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  from uniprotSequenceMatch import uniprotSequenceMatch
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  from process_input import clean_data
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  from alphafold_model import *
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+ import streamlit as st
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  def alphafold(input_set, mode, impute):
 
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  ## Physicochemical properties
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  print('Adding physicochemical properties...\n')
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  data = add_physicochemical(data)
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+ st.write('DOMAIN BAK')
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+ st.write(data)
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  ## Domains
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  print('Adding domains\n')
 
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  not_match_in_uniprot[key] = ''
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  not_match_in_uniprot = not_match_in_uniprot.rename(columns=change_names)
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  uniprot_matched = add_annotations(uniprot_matched)
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+ st.write('uniprot_matched')
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+ st.write(uniprot_matched)
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+
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  for w in uniprot_matched.index:
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  for q in annotation_list: