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a802398
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Parent(s):
8b86e87
Update code/alphafold_featureVector.py
Browse files
code/alphafold_featureVector.py
CHANGED
@@ -309,6 +309,7 @@ from standard import *
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from uniprotSequenceMatch import uniprotSequenceMatch
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from process_input import clean_data
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from alphafold_model import *
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def alphafold(input_set, mode, impute):
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@@ -346,6 +347,8 @@ def alphafold(input_set, mode, impute):
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## Physicochemical properties
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print('Adding physicochemical properties...\n')
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data = add_physicochemical(data)
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## Domains
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print('Adding domains\n')
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@@ -376,6 +379,9 @@ def alphafold(input_set, mode, impute):
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not_match_in_uniprot[key] = ''
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not_match_in_uniprot = not_match_in_uniprot.rename(columns=change_names)
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uniprot_matched = add_annotations(uniprot_matched)
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for w in uniprot_matched.index:
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for q in annotation_list:
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from uniprotSequenceMatch import uniprotSequenceMatch
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from process_input import clean_data
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from alphafold_model import *
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import streamlit as st
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def alphafold(input_set, mode, impute):
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## Physicochemical properties
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print('Adding physicochemical properties...\n')
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data = add_physicochemical(data)
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st.write('DOMAIN BAK')
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st.write(data)
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## Domains
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print('Adding domains\n')
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not_match_in_uniprot[key] = ''
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not_match_in_uniprot = not_match_in_uniprot.rename(columns=change_names)
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uniprot_matched = add_annotations(uniprot_matched)
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st.write('uniprot_matched')
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st.write(uniprot_matched)
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for w in uniprot_matched.index:
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for q in annotation_list:
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