Update code/add_3Dalignment.py

code/add_3Dalignment.py

@@ -223,7 +223,6 @@ def get_alignments_3D(identifier, model_num, pdb_path, pdbSequence, source, chai
         if source == 'PDB':
             # Step 1: Fetch the PDB file
             pdb_url = f"https://files.rcsb.org/download/{pdbID}.pdb"
-            print(pdb_url)
             response = requests.get(pdb_url)
             response.raise_for_status()  # Check for a successful response
             # Step 2: Parse the PDB file from memory
@@ -266,6 +265,10 @@ def get_alignments_3D(identifier, model_num, pdb_path, pdbSequence, source, chai
         aligner.substitution_matrix = substitution_matrices.load("BLOSUM62")
         aligner.open_gap_score = -11
         aligner.extend_gap_score = -1
+        print('I wanna sleep')
+        print(pdbSequence)
+        print(atomSequence)
+        print(aligner.align(pdbSequence, atomSequence))
         alignments = aligner.align(pdbSequence, atomSequence)
         alignments = (list(alignments))
         print('IN FUNC')