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Update src/about.py
Browse files- src/about.py +9 -18
src/about.py
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@@ -111,28 +111,19 @@ benchmark_specific_metrics = {
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'affinity': ['mse', 'mae', 'corr']
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}
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display_labels = [
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'BLAST', 'HMMER', 'K-SEP', 'APAAC', 'PFAM', 'AAC', 'PROTVEC',
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'GENE2VEC', 'LEARNED-VEC', 'MUT2VEC', 'TCGA-EMBEDDING', 'CPCPROT',
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'SEQVEC', 'ProtBERT-BFD', 'TAPE-BERT-PFAM', 'ESM-1b', 'ProtALBERT', 'ProtXLNet', 'UNIREP', 'ProtT5-XL',
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'MSA-Transformer'
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]
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group_colors = [
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'green', 'green', 'green', 'green', 'green', 'green', 'blue',
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'blue', 'blue', 'blue', 'blue', 'blue', 'red', 'red',
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'red', 'red', 'red', 'red', 'red', 'red', 'red'
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]
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# Create a color dictionary from the labels and colors
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color_dict = {method.upper(): color for method, color in zip(display_labels, group_colors)}
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group_color_dict = {
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'INTERPRO2GO': 'orange', 'UNIRULE2GO': 'orange', 'ENSEMBL-ORTHOLOGY': 'orange',
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'K-SEP': 'green', 'BERT-PFAM': 'red', 'UNIREP': 'red', 'T5': 'red',
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'BERT-BFD': 'red', 'HMMER': 'green', 'SEQVEC': 'red', 'ALBERT': 'red',
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'BLAST': 'green', 'PFAM': 'green', '
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'
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'LEARNED-VEC': 'blue', 'CPC-PROT': 'blue', 'GENE2VEC': 'blue',
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'TCGA-EMBEDDING': 'blue'
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}
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'affinity': ['mse', 'mae', 'corr']
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}
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group_color_dict = {
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'INTERPRO2GO': 'orange', 'UNIRULE2GO': 'orange', 'ENSEMBL-ORTHOLOGY': 'orange',
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'K-SEP': 'green', 'BERT-PFAM': 'red', 'UNIREP': 'red', 'T5': 'red',
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'BERT-BFD': 'red', 'HMMER': 'green', 'SEQVEC': 'red', 'ALBERT': 'red',
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'BLAST': 'green', 'PFAM': 'green', 'ESM1B': 'red', 'XLNET': 'red',
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'APAAC': 'green', 'APAAC': 'green', 'PROTVEC': 'blue', 'MUT2VEC': 'blue',
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'LEARNED-VEC': 'blue', 'CPC-PROT': 'blue', 'GENE2VEC': 'blue',
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'TCGA-EMBEDDING': 'blue'
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}
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base_methods = [
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'INTERPRO2GO', 'UNIRULE2GO', 'ENSEMBL-ORTHOLOGY', 'K-SEP', 'BERT-PFAM',
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'UNIREP', 'T5', 'BERT-BFD', 'HMMER', 'SEQVEC', 'ALBERT', 'BLAST', 'PFAM',
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'ESM1B', 'XLNET', 'APAAC', 'PROTVEC', 'MUT2VEC', 'LEARNED-VEC', 'CPC-PROT',
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'GENE2VEC', 'TCGA-EMBEDDING'
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]
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