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leaderboard_results.csv

@@ -1,49 +1,49 @@
-Method,sim_sparse_MF_correlation,sim_sparse_CC_correlation,sim_sparse_BP_correlation,sim_sparse_Ave_correlation,sim_200_MF_correlation,sim_200_CC_correlation,sim_200_BP_correlation,sim_200_Ave_correlation,sim_500_MF_correlation,sim_500_CC_correlation,sim_500_BP_correlation,sim_500_Ave_correlation,func_MF_accuracy,func_MF_F1,func_MF_precision,func_MF_recall,func_BP_accuracy,func_BP_F1,func_BP_precision,func_BP_recall,func_CC_accuracy,func_CC_F1,func_CC_precision,func_CC_recall,func_Ave_accuracy,func_Ave_F1,func_Ave_precision,func_Ave_recall,fam_nc_f1_ave,fam_nc_accuracy_ave,fam_nc_mcc_ave,fam_uc30_f1_ave,fam_uc30_accuracy_ave,fam_uc30_mcc_ave,fam_uc50_f1_ave,fam_uc50_accuracy_ave,fam_uc50_mcc_ave,fam_mm15_f1_ave,fam_mm15_accuracy_ave,fam_mm15_mcc_ave,aff_mse_ave,aff_mae_ave,aff_corr_ave,sim_sparse_MF_pvalue,sim_sparse_BP_pvalue,sim_sparse_CC_pvalue,sim_sparse_Ave_pvalue,sim_200_MF_pvalue,sim_200_BP_pvalue,sim_200_CC_pvalue,sim_200_Ave_pvalue,sim_500_MF_pvalue,sim_500_BP_pvalue,sim_500_CC_pvalue,sim_500_Ave_pvalue
-AAC,-0.0121,0.0912,0.2141,0.0978,,,,,,,,,0.3881,0.4097,0.4867,0.443,0.1611,0.1872,0.3225,0.1976,0.2394,0.2322,0.2829,0.2819,0.2629,0.2764,0.364,0.3075,0.6178,0.6013,0.4607,0.5459,0.5508,0.435,0.5578,0.5505,0.4354,0.5868,0.5675,0.4167,1.8478,10.5931,0.4605,,,,,,,,,,,,
-APAAC,0.1717,0.2409,0.2736,0.2287,,,,,,,,,0.471,0.5828,0.6744,0.5989,0.2239,0.3447,0.423,0.4093,0.2396,0.3953,0.4525,0.4603,0.3115,0.4409,0.5166,0.4895,0.4636,0.4722,0.3556,0.2315,0.2661,0.2398,0.3843,0.3888,0.2965,0.3779,0.3854,0.2879,1.7901,10.2267,0.4772,,,,,,,,,,,,
-LEARNED-VEC,0.41,0.3052,0.2987,0.338,,,,,,,,,0.5858,0.6755,0.7205,0.6822,0.3066,0.3917,0.4774,0.387,0.3162,0.4089,0.4695,0.4221,0.4029,0.492,0.5558,0.4971,0.6879,0.6754,0.5398,0.6814,0.6705,0.5323,0.6921,0.6817,0.5387,0.6564,0.6366,0.4873,1.1848,8.1308,0.7034,,,,,,,,,,,,
-PROTVEC,0.1854,0.2058,0.2953,0.2288,,,,,,,,,0.5189,0.6367,0.6806,0.6692,0.2383,0.3624,0.4098,0.4215,0.2428,0.3808,0.4526,0.4208,0.3333,0.46,0.5143,0.5038,0.4383,0.4301,0.3518,0.4565,0.4486,0.3565,0.5457,0.5312,0.4064,0.5372,0.5368,0.4098,1.1341,8.0889,0.7191,,,,,,,,,,,,
-K-SEP,0.2222,0.2944,0.2924,0.2697,,,,,,,,,0.7068,0.809,0.848,0.8124,0.359,0.5169,0.5932,0.5497,0.3445,0.5023,0.5819,0.5385,0.4701,0.6094,0.6744,0.6335,0.7496,0.7277,0.6548,0.769,0.7695,0.6933,0.8079,0.8001,0.7068,0.7254,0.71,0.607,0.9705,7.2073,0.7613,,,,,,,,,,,,
-MUT2VEC,0.5462,0.3949,0.5799,0.507,,,,,,,,,0.4887,0.5731,0.6264,0.5738,0.3273,0.4271,0.4931,0.4205,0.3604,0.4616,0.5288,0.4561,0.3922,0.4873,0.5495,0.4835,0.5755,0.5542,0.3694,0.5786,0.5583,0.3655,0.5813,0.5618,0.3662,0.5894,0.5724,0.3617,,,,,,,,,,,,,,,
-GENE2VEC,0.1756,0.3596,0.408,0.3144,,,,,,,,,0.444,0.5311,0.5932,0.5266,0.3116,0.4385,0.4921,0.4214,0.374,0.5016,0.5499,0.5009,0.3765,0.4904,0.5451,0.483,0.4978,0.4668,0.2701,0.5044,0.4736,0.2709,0.4887,0.4569,0.2629,0.454,0.4135,0.2167,,,,,,,,,,,,,,,
-TCGA-EMBEDDING,0.0375,0.5033,0.4822,0.341,,,,,,,,,0.3026,0.3439,0.4061,0.3573,0.2366,0.3205,0.4167,0.3173,0.3416,0.4119,0.4955,0.4396,0.2936,0.3588,0.4395,0.3714,0.4831,0.4659,0.2476,0.4749,0.459,0.2444,0.4848,0.4668,0.2493,0.453,0.4342,0.1985,,,,,,,,,,,,,,,
-PFAM,0.3489,0.5107,0.4222,0.4273,,,,,,,,,0.8148,0.8644,0.9292,0.8366,0.4794,0.5572,0.6724,0.5176,0.5037,0.5806,0.7127,0.5397,0.5993,0.6674,0.7714,0.6313,0.9193,0.9233,0.875,0.9155,0.92,0.8696,0.9166,0.9204,0.8701,0.8432,0.8493,0.761,2.2579,11.6927,0.1917,,,,,,,,,,,,
-CPC-PROT,0.0605,-0.087,0.1091,0.0275,,,,,,,,,0.5183,0.6545,0.7049,0.6819,0.2688,0.3955,0.5084,0.4087,0.3214,0.4352,0.5207,0.4555,0.3695,0.495,0.578,0.5153,0.7234,0.7117,0.5852,0.711,0.696,0.5716,0.7433,0.7351,0.6058,0.7159,0.7102,0.5676,0.7299,6.2609,0.8309,,,,,,,,,,,,
-ESM1B,0.3847,0.3732,0.4152,0.391,,,,,,,,,0.7657,0.8324,0.8653,0.8376,0.4152,0.5333,0.6412,0.5463,0.4682,0.6098,0.7013,0.6317,0.5497,0.6585,0.7359,0.6719,0.9336,0.9321,0.8951,0.9359,0.9339,0.8965,0.8978,0.8864,0.8423,0.9151,0.9149,0.8636,0.4828,5.0019,0.8915,,,,,,,,,,,,
-BERT-BFD,0.2919,0.4157,0.3235,0.3437,,,,,,,,,0.7667,0.8482,0.8727,0.8417,0.4867,0.6116,0.6996,0.5894,0.5062,0.6221,0.6941,0.6224,0.5865,0.6939,0.7555,0.6845,0.879,0.8748,0.8076,0.8762,0.8721,0.8046,0.8805,0.8767,0.8101,0.8561,0.8491,0.7728,0.5736,5.2118,0.874,,,,,,,,,,,,
-BERT-PFAM,0.4965,0.2218,0.2068,0.3084,,,,,,,,,0.7823,0.8466,0.8594,0.8533,0.4048,0.5351,0.6125,0.5465,0.4518,0.5811,0.6603,0.5823,0.5463,0.6543,0.7107,0.6607,0.8329,0.8226,0.7505,0.8393,0.8327,0.7558,0.8223,0.8104,0.7297,0.7868,0.7716,0.68,,,,,,,,,,,,,,,
-ALBERT,0.2219,0.3181,0.369,0.303,,,,,,,,,0.8345,0.8854,0.9133,0.8735,0.5106,0.6255,0.7063,0.6011,0.5135,0.6355,0.7256,0.6129,0.6195,0.7155,0.7817,0.6958,0.9419,0.9414,0.9059,0.9395,0.9398,0.9026,0.9364,0.936,0.8976,0.9033,0.9038,0.8437,0.4183,4.5728,0.9071,,,,,,,,,,,,
-BLAST,0.1127,0.0885,0.3432,0.1815,,,,,,,,,0.8421,0.8749,0.9219,0.8571,0.4616,0.5559,0.6807,0.502,0.4851,0.5731,0.6969,0.5298,0.5963,0.668,0.7665,0.6296,0.8899,0.8837,0.8296,0.8676,0.8537,0.7958,0.8783,0.8678,0.8101,0.7742,0.7458,0.6719,,,,,,,,,,,,,,,
-HMMER,0.1374,0.3219,0.1577,0.2056,,,,,,,,,0.8579,0.8908,0.9115,0.888,0.5022,0.611,0.6448,0.6037,0.491,0.5957,0.6451,0.5868,0.6171,0.6992,0.7338,0.6928,0.8886,0.8821,0.8257,0.8786,0.8704,0.8104,0.8847,0.8775,0.8191,0.8048,0.7875,0.7075,,,,,,,,,,,,,,,
-UNIREP,0.4213,0.3248,0.4695,0.4052,,,,,,,,,0.7499,0.8232,0.8599,0.8237,0.376,0.4795,0.5962,0.4915,0.3803,0.5325,0.5883,0.5722,0.502,0.6117,0.6815,0.6291,0.7739,0.7633,0.6871,0.8253,0.8168,0.7271,0.8064,0.7961,0.7094,0.7034,0.6829,0.6069,0.7321,6.3874,0.8299,,,,,,,,,,,,
-XLNET,0.2271,0.2549,0.309,0.2637,,,,,,,,,0.7114,0.8158,0.8472,0.8248,0.3729,0.4996,0.612,0.5095,0.4466,0.5878,0.6673,0.5987,0.5103,0.6344,0.7088,0.6443,0.904,0.9018,0.849,0.8677,0.8586,0.7981,0.8511,0.8368,0.7857,0.8411,0.8272,0.7531,0.6068,5.7001,0.8615,,,,,,,,,,,,
-T5,0.5664,0.3985,0.2127,0.3925,,,,,,,,,0.8573,0.9013,0.9224,0.8921,0.5686,0.6558,0.7127,0.6316,0.5884,0.6803,0.7561,0.6616,0.6715,0.7458,0.797,0.7284,0.941,0.9399,0.9045,0.9409,0.9396,0.9042,0.9404,0.9388,0.9036,0.9237,0.9221,0.8769,0.6035,5.462,0.8666,,,,,,,,,,,,
-SEQVEC,0.4238,0.4242,0.2436,0.3639,,,,,,,,,0.8366,0.8857,0.9084,0.8779,0.5021,0.6003,0.647,0.5903,0.501,0.6065,0.6817,0.5918,0.6132,0.6975,0.7457,0.6867,0.915,0.913,0.863,0.9109,0.9092,0.8572,0.9102,0.908,0.8557,0.8865,0.8828,0.8175,0.5331,5.2423,0.8801,,,,,,,,,,,,
-ESM2,0.2978,0.2811,0.4274,0.3354,,,,,,,,,0.8321,0.8743,0.8979,0.8703,0.4671,0.5987,0.6671,0.5977,0.5319,0.6472,0.7147,0.6489,0.6104,0.7067,0.7599,0.7056,0.9328,0.9308,0.8927,0.9397,0.9389,0.9033,0.93,0.9289,0.889,0.9163,0.9174,0.8676,0.4759,4.9639,0.8931,,,,,,,,,,,,
-ESM3,0.5102,0.5762,0.4227,0.5031,,,,,,,,,0.6839,0.8076,0.8416,0.8261,0.3729,0.4988,0.6074,0.5303,0.3812,0.5176,0.5913,0.5507,0.4793,0.608,0.6801,0.6357,0.8444,0.8259,0.7794,0.8906,0.8819,0.826,0.8535,0.8378,0.7926,0.851,0.833,0.7775,0.5116,5.2333,0.8888,,,,,,,,,,,,
-SaProt,0.4032,0.3691,0.2419,0.338,,,,,,,,,0.7678,0.831,0.8557,0.8375,0.4591,0.5752,0.6842,0.5486,0.5095,0.6016,0.686,0.6024,0.5788,0.6693,0.742,0.6629,0.8955,0.8923,0.8328,0.8904,0.8866,0.8254,0.8982,0.8971,0.8376,0.8758,0.8727,0.8044,,,,,,,,,,,,,,,
-ProstT5,0.4474,0.4156,0.0806,0.3146,,,,,,,,,0.8127,0.8745,0.8999,0.8733,0.545,0.6459,0.7238,0.6259,0.5417,0.6435,0.6991,0.6335,0.6331,0.7213,0.7743,0.7109,0.9317,0.9304,0.8901,0.928,0.9266,0.8844,0.9266,0.9245,0.8827,0.9098,0.9064,0.8549,0.7844,5.8314,0.8292,,,,,,,,,,,,
-ProtHGT-TAPE-MF-func,,,,,,,,,,,,,0.7109514285714286,0.7840985714285714,0.8415357142857144,0.7763971428571429,0.43237,0.5608688888888889,0.6232233333333332,0.5613022222222221,0.4734324999999999,0.5836999999999999,0.6390262499999999,0.5921799999999999,0.5389179761904761,0.6428891534391533,0.7012617658730158,0.6432931216931217,0.902551662403582,0.9020656012170972,0.8435734563566999,0.8995090521103934,0.8995834368239226,0.840373974069896,0.8965867694515932,0.894773812610727,0.8337366369873861,0.8884840820291682,0.8872368584065026,0.8215023342478454,,,,,,,,,,,,,,,
-ProtHGT-TAPE-CC-func,,,,,,,,,,,,,0.65759,0.7641171428571428,0.8074628571428573,0.7578128571428573,0.4776955555555556,0.6299611111111112,0.6985377777777777,0.6180755555555556,0.5264212500000001,0.6567299999999999,0.7075687500000001,0.6540575,0.5539022685185185,0.6836027513227513,0.7378564616402117,0.6766486375661375,0.772404662637896,0.7669528254343638,0.6507509634515324,0.7616769140181574,0.7531626706230651,0.6373459111270877,0.7664553454152191,0.7603607372689793,0.6412147388111021,0.7520693089140218,0.7422149253492748,0.6276737529323523,,,,,,,,,,,,,,,
-ProtHGT-TAPE-BP-func,,,,,,,,,,,,,0.7993385714285715,0.8599942857142857,0.9069914285714286,0.8456385714285715,0.6035533333333333,0.7224766666666665,0.7903366666666667,0.7140888888888888,0.5640324999999999,0.70560625,0.74672125,0.71735625,0.6556414682539683,0.7626924007936507,0.8146831150793651,0.7590279034391534,0.8795421523301851,0.8755489750909282,0.8088708173956827,0.8820139220787693,0.8773574547448899,0.8123928254671604,0.8801033286764894,0.8747161754602958,0.809076045421455,0.8667805714347697,0.8612835578330926,0.7899194533412344,,,,,,,,,,,,,,,
-ProtHGT-TAPE-family,,,,,,,,,,,,,,,,,,,,,,,,,,,,,0.9300995756898768,0.928842689125402,0.8861314102144295,0.9254681579392798,0.9251294284772832,0.8803837740656311,0.9273562896770352,0.926640440199604,0.8826212041118685,0.9133679654397376,0.9115503177690938,0.8604841527923828,,,,,,,,,,,,,,,
-ProtHGT-ProtT5-MF-func,,,,,,,,,,,,,0.74092,0.8384,0.8708742857142856,0.8271485714285713,0.4905455555555555,0.6392011111111111,0.700411111111111,0.6392333333333333,0.4784225,0.60629375,0.6603137499999999,0.6153837500000001,0.5699626851851852,0.6946316203703704,0.7438663822751321,0.693921884920635,0.8859677760731761,0.8862304277104686,0.8193905571695836,0.8890527164181264,0.8897688432199841,0.8250599831322875,0.8921688622429134,0.8915928139117909,0.826736890301131,0.8752768076867297,0.8741695074553204,0.8023875505340717,,,,,,,,,,,,,,,
-ProtHGT-ProtT5-BP-func,,,,,,,,,,,,,0.7959714285714286,0.8574871428571428,0.90145,0.8412242857142858,0.5782022222222222,0.7059688888888888,0.7711711111111111,0.69007,0.5483837500000001,0.66051375,0.72105,0.65924,0.6408524669312169,0.7413232605820106,0.7978903703703705,0.7301780952380952,0.8972723878600581,0.8945921106952724,0.8346488433637799,0.9014630221641364,0.8998017050664199,0.8418864083473621,0.9014278167702632,0.8996657133012265,0.8420832578887145,0.8937784766741276,0.8920094532644441,0.8309162884371812,,,,,,,,,,,,,,,
-ProtHGT-ProtT5-CC-func,,,,,,,,,,,,,0.6418999999999999,0.7468985714285715,0.8053642857142858,0.7308385714285714,0.4776011111111111,0.614531111111111,0.6669877777777776,0.6042788888888889,0.53560875,0.6774825,0.7148375,0.6893825000000001,0.551703287037037,0.6796373941798941,0.7290631878306879,0.6748333201058202,0.8064380876172251,0.8021582421849043,0.697735199839909,0.8018337619558883,0.7986231335848879,0.6939574995511564,0.8029099641356368,0.7976537865353763,0.6922448019654163,0.7869354937819889,0.7839427065928478,0.675260344246072,,,,,,,,,,,,,,,
-ProtHGT-ProtT5-family,,,,,,,,,,,,,,,,,,,,,,,,,,,,,0.9235427641755146,0.9233325213941512,0.877014908121318,0.920276620529226,0.9195975257312146,0.8718743318512567,0.9198339742949978,0.9182504565871348,0.870482574918651,0.9110840318220428,0.9097094291432648,0.8575229328324461,,,,,,,,,,,,,,,
-ProtHGT-ESM2-BP-func,,,,,,,,,,,,,0.8274642857142859,0.8828214285714286,0.9219628571428572,0.8648371428571429,0.6250544444444445,0.74983,0.8051,0.7429722222222223,0.57408625,0.6806575,0.7440375000000001,0.67525,0.6755349933862435,0.7711029761904763,0.8237001190476191,0.7610197883597883,0.8881007547774917,0.8858141691046025,0.8211098395742701,0.8818252153045515,0.8796201861860018,0.8123907559399859,0.8855804839884239,0.8832987683437263,0.8170366937128545,0.8796074848205512,0.8776734109600239,0.8088437131200523,,,,,,,,,,,,,,,
-ProtHGT-ESM2-MF-func,,,,,,,,,,,,,0.7352271428571429,0.8144542857142857,0.8483042857142857,0.8074157142857142,0.4733011111111111,0.6153666666666666,0.6603466666666667,0.6315666666666666,0.42975375,0.5718512499999999,0.63801125,0.5779925,0.5460940013227513,0.6672240674603174,0.7155540674603175,0.6723249603174604,0.8964676720660478,0.8958556525161159,0.8351190718435136,0.8969595570663946,0.8965420688722177,0.8360563729223142,0.8998945178317937,0.8991356088708544,0.8399435373566642,0.8885049961894109,0.8888358071906028,0.8245936142232916,,,,,,,,,,,,,,,
-ProtHGT-ESM2-CC-func,,,,,,,,,,,,,0.62646,0.7541814285714287,0.7964728571428573,0.7510199999999999,0.4435455555555556,0.6200422222222222,0.6787188888888889,0.6251877777777778,0.5211925,0.6706987500000001,0.72478875,0.66903875,0.5303993518518518,0.6816408002645503,0.733326832010582,0.6817488425925925,0.7520874435102824,0.7381051120280552,0.6230449917350936,0.7576242424400197,0.7497047753987988,0.63303346485266,0.7617984928120712,0.7555589696280988,0.6365483188213416,0.7231019819960258,0.7117395556765701,0.5859915400549831,,,,,,,,,,,,,,,
-ProtHGT-ESM2-family,,,,,,,,,,,,,,,,,,,,,,,,,,,,,0.9185791555890316,0.917709403272282,0.8689518785669348,0.9149206550613418,0.914836677084353,0.8643511806261271,0.916864736534041,0.9166098245611825,0.8671683575339445,0.9069520215899692,0.9057421277687144,0.8518072518997502,,,,,,,,,,,,,,,
-ProtHGT-TAPE-MF-sim,0.0676426208867526,0.2256642052045639,0.1130999435347261,0.1354689232086809,0.1046625870719076,0.0238279343234809,0.0698222676221539,0.0661042630058474,0.0562899711836086,0.0114963837042151,0.0325825354877617,0.0334562967918618,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,0.3081152026374549,0.0863172211631897,0.0006866785551513,0.131706367451932,7.887475622858088e-46,7.483266677192571e-21,0.0014920117291723,0.0004973372430574,2.3657666044607863e-79,2.7765463702827703e-27,0.0001444234657429,4.814115524765194e-05
-ProtHGT-TAPE-BP-sim,0.4424859852307816,0.3767270633862561,0.2706400046729882,0.3632843510966753,0.2143909167941879,-0.0071818570350743,0.1447744236104239,0.1173278277898458,0.2117889857352714,-0.0018704341207202,0.0746192793045373,0.0948459436396961,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,2.134408374049528e-12,3.0576812552093345e-05,6.2630970437801054e-09,1.0194359261181831e-05,1.2912840671594308e-189,1.0829837680869216e-84,0.3384619390274673,0.1128206463424891,0.0,7.553382437897129e-136,0.5363729565044189,0.1787909855014729
-ProtHGT-TAPE-CC-sim,0.2212604798497097,0.4630823969388991,0.1270186335403726,0.2704538367763271,0.085973478542632,0.1015261525058111,0.0479394582610972,0.0784796964365135,0.1162193876485697,0.0557492273127652,0.0472710508457386,0.0730798886023578,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,0.0007466654287222,0.0538726534837088,2.976628727273831e-13,0.0182064396375762,1.981044607509484e-31,1.3018414706922815e-10,6.331641278776996e-42,4.339471568974272e-11,0.0,1.4666915843160296e-55,5.904927474930695e-76,4.888971947720099e-56
-ProtHGT-ProtT5-MF-sim,-0.0832921966964116,0.0739715532316429,0.0806411729200334,0.0237735098184215,0.028233518352841,0.0509639393305118,0.0725070354735275,0.0505681643856268,0.0190007028033543,0.0175142952144854,0.0615461153444059,0.0326870377874152,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,0.2092155749679086,0.2220934423524836,0.2713623773816051,0.2342237982339991,0.0001315086794027,2.2950062144651603e-22,1.0690947216718789e-11,4.38362300312305e-05,1.9885667942660566e-10,5.809733514866594e-93,6.533219975751238e-09,2.244025551725948e-09
-ProtHGT-ProtT5-CC-sim,-0.1611683471066122,0.4360532056720397,0.2133199633949259,0.1627349406534511,0.0483196915996448,0.052080276149592,-0.0059642086679254,0.0314785863604371,0.028616800255214,0.0618820703296473,0.0550623536726336,0.0485204080858317,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,0.0146241248213838,0.0011054118617711,9.139771576546976e-12,0.0052431788974315,5.895216744065964e-11,0.424213195718257,3.758912026765176e-12,0.141404398593656,9.409658491972688e-22,9.30168819867313e-75,1.4364215564713362e-93,3.1365528306575642e-22
-ProtHGT-ProtT5-BP-sim,0.4428227394002378,0.3422052738196235,0.3019071633014661,0.3623117255071091,0.1664744430958502,0.02445474411873,0.1203713554443648,0.1037668475529817,0.192658828730332,-0.0026714534349827,0.0996770164875359,0.0965547972609617,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,2.0449554563548134e-12,2.9653468953302774e-06,1.6007642027145069e-07,1.0418084535190616e-06,4.540350859830304e-114,6.22173661274808e-59,0.0011148671571486,0.0003716223857162,0.0,2.580401976701932e-241,0.3761626584621718,0.1253875528207239
-ProtHGT-ESM2-BP-sim,0.3847551287560082,0.3351541804456603,0.219428921902685,0.3131127437014511,0.1301583536501021,0.0200412462911787,0.0698632597882439,0.0733542865765082,0.1473732693228525,0.0082744328947388,0.0419182893687102,0.0658553305287672,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,1.701138467467754e-09,0.0007852072573699,2.962547893906677e-07,0.0002618350710992,4.272817257694715e-70,7.102477664065676e-21,0.00787956261439,0.0026265208714633,0.0,4.639641168342781e-44,0.0064572489544018,0.0021524163181339
-ProtHGT-ESM2-CC-sim,0.0813226344768319,0.3969562130997108,0.2426040226639927,0.2402942900801784,0.0470307960894307,0.1601992506561486,0.1060445981180016,0.1044248816211936,0.0429355692740338,0.1042126175585608,0.0670102492040006,0.0713861453455317,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,0.2202242874487431,0.000196844403589,7.79650991893396e-10,0.0734737108773277,1.8712185124405203e-10,4.5616763403531055e-46,2.2240916829917088e-101,6.237395041468401e-11,1.0416106246024928e-46,7.017346116826454e-110,2.923089565241652e-259,3.472035415341642e-47
-ProtHGT-ESM2-MF-sim,0.0868915691545172,0.2241503194417992,0.1096828209271987,0.1402415698411717,0.1172293506892731,-0.0488488478445351,0.0639934841989273,0.0441246623478884,0.0802552419869001,-0.0026646079090276,0.0546650908307462,0.0440852416362062,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,0.1901309231001939,0.0963099565130155,0.0007476837906348,0.0957295211346147,4.054596222820034e-57,9.235887483558274e-18,9.179065125671576e-11,3.0596886830867746e-11,7.00116753370153e-159,1.0424809999179631e-73,0.3804494369525739,0.1268164789841913
-ProtHGT-TAPE-sim,0.162571322934258,0.3788436899423446,0.1408730699585272,0.2274293609450433,0.1275519972633517,0.0532139726972253,0.0805145733501943,0.0870935144369238,0.0951652183848205,0.0275043259658933,0.0459752173293225,0.0562149205600121,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,0.0137743131590415,0.0323422958435411,5.069516408871396e-09,0.0153722046906997,2.2839880541708807e-67,3.243752781991338e-27,1.2714847676303249e-12,4.238282558767761e-13,8.763484360762092e-224,1.1923654894510878e-52,9.5652004262136e-20,3.1884001420712e-20
-ProtHGT-ProtT5-sim,-0.0934327940603359,0.4167146406496182,0.2127358398722716,0.1786725621538513,0.053133156625212,0.0656871861781072,0.0523244307275043,0.0570482578436079,0.0428466022625695,0.0511287699496268,0.0786334438219018,0.057536272011366,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,0.1587636030873938,0.0011416046342326,8.854282395819451e-11,0.053301735936723,6.048628196921009e-13,2.2897060229736265e-12,1.8804127047153322e-18,9.648569076928106e-13,1.0334402001368028e-46,1.1107962777542873e-150,1.9643107021904622e-64,3.444800667122676e-47
-ProtHGT-ESM2-sim,0.16378143954912916,0.38159119240957806,0.21042855195778737,0.2519337279721649,0.12113896355194584,0.06865639492264644,0.09517753505562324,0.09499096451007183,0.0901291725605845,0.06448500618634291,0.07343385649042149,0.07601601174578297,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,0.013076438537061833,0.00129545911264789,3.844079424476974e-09,0.00479063383126305,6.76333177414913e-61,2.0783151724625092e-37,8.034805491770392e-20,2.6782684972567974e-20,5.2055994770096916e-200,1.2837985227281428e-131,3.467509401898833e-100,1.155836467299611e-100
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+ESM1B;0.3847;0.3732;0.4152;0.391;;;;;;;;;0.7657;0.8324;0.8653;0.8376;0.4152;0.5333;0.6412;0.5463;0.4682;0.6098;0.7013;0.6317;0.5497;0.6585;0.7359;0.6719;0.9336;0.9321;0.8951;0.9359;0.9339;0.8965;0.8978;0.8864;0.8423;0.9151;0.9149;0.8636;0.4828;50.019;0.8915
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+ProtHGT-ESM2-CC-func;;;;;;;;;;;;;0.62646;0.7541814285714287;0.7964728571428573;0.7510199999999999;0.4435455555555556;0.6200422222222222;0.6787188888888889;0.6251877777777778;0.5211925;0.6706987500000001;0.72478875;0.66903875;0.5303993518518518;0.6816408002645503;0.733326832010582;0.6817488425925925;0.7520874435102824;0.7381051120280552;0.6230449917350936;0.7576242424400197;0.7497047753987988;0.63303346485266;0.7617984928120712;0.7555589696280988;0.6365483188213416;0.7231019819960258;0.7117395556765701;0.5859915400549831;;;
+ProtHGT-ESM2-family;;;;;;;;;;;;;;;;;;;;;;;;;;;;;0.9185791555890316;0.917709403272282;0.8689518785669348;0.9149206550613418;0.914836677084353;0.8643511806261271;0.916864736534041;0.9166098245611825;0.8671683575339445;0.9069520215899692;0.9057421277687144;0.8518072518997502;;;
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+ProtHGT-ESM2-sim;0.16378143954912916;0.38159119240957806;0.21042855195778737;0.2519337279721649;0.12113896355194584;0.06865639492264644;0.09517753505562324;0.09499096451007183;0.0901291725605845;0.06448500618634291;0.07343385649042149;0.07601601174578297;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;

similarity_results.csv

@@ -1,37 +1,37 @@
-Method,sparse_MF_correlation,sparse_CC_correlation,sparse_BP_correlation,sparse_Ave_correlation,200_MF_correlation,200_CC_correlation,200_BP_correlation,200_Ave_correlation,500_MF_correlation,500_CC_correlation,500_BP_correlation,500_Ave_correlation,sparse_MF_pvalue,sparse_BP_pvalue,sparse_CC_pvalue,sparse_Ave_pvalue,200_MF_pvalue,200_BP_pvalue,200_CC_pvalue,200_Ave_pvalue,500_MF_pvalue,500_BP_pvalue,500_CC_pvalue,500_Ave_pvalue
-AAC,-0.0120530487301072,0.0912116785938685,0.2141018739428611,0.0977535012688741,,,,,,,,,,,,,,,,,,,,
-APAAC,0.1716732195001037,0.240874262539882,0.2735843497262189,0.2287106105887349,,,,,,,,,,,,,,,,,,,,
-LEARNED-VEC,0.4099830116701563,0.3051938408310146,0.2987112063885428,0.3379626862965713,,,,,,,,,,,,,,,,,,,,
-PROTVEC,0.1854412229985308,0.2058335849333736,0.2952566916292122,0.2288438331870389,,,,,,,,,,,,,,,,,,,,
-K-SEP,0.2222351644321201,0.2943533697632057,0.2924105791926405,0.2696663711293221,,,,,,,,,,,,,,,,,,,,
-MUT2VEC,0.5462247913812742,0.3948878923766817,0.5799222876570942,0.50701165713835,,,,,,,,,,,,,,,,,,,,
-GENE2VEC,0.1756222504801268,0.359607993537279,0.407953665862896,0.3143946366267673,,,,,,,,,,,,,,,,,,,,
-XLNET,0.2270935836252544,0.2549405428464779,0.3090004241910071,0.2636781835542465,,,,,,,,,,,,,,,,,,,,
-T5,0.5663605927245389,0.3984518032670328,0.2126939158889831,0.392502103960185,,,,,,,,,,,,,,,,,,,,
-SEQVEC,0.4237953500744624,0.4242066438730631,0.2436484071644948,0.3638834670373401,,,,,,,,,,,,,,,,,,,,
-TCGA-EMBEDDING,0.0375448135213401,0.5033396964743626,0.4822408636127631,0.3410417912028219,,,,,,,,,,,,,,,,,,,,
-PFAM,0.3489483982233921,0.510730419386372,0.422215963284985,0.4272982602982497,,,,,,,,,,,,,,,,,,,,
-CPC-PROT,0.0604542610865414,-0.0869798610000177,0.1090657842339456,0.0275133947734897,,,,,,,,,,,,,,,,,,,,
-ESM1B,0.384697625027269,0.3731936223537567,0.4151856052080267,0.3910256175296842,,,,,,,,,,,,,,,,,,,,
-BERT-BFD,0.2918631086847955,0.4157201514424359,0.3234845992693526,0.3436892864655279,,,,,,,,,,,,,,,,,,,,
-BERT-PFAM,0.4964861293154893,0.2217707389039976,0.2068266617033433,0.3083611766409434,,,,,,,,,,,,,,,,,,,,
-ALBERT,0.2218813721583892,0.3181002150766988,0.3690126305036619,0.3029980725795833,,,,,,,,,,,,,,,,,,,,
-BLAST,0.1127460653100103,0.0884833522711429,0.3431671202767732,0.1814655126193088,,,,,,,,,,,,,,,,,,,,
-HMMER,0.1373599246282869,0.3218542802568603,0.1577102930764373,0.2056414993205282,,,,,,,,,,,,,,,,,,,,
-UNIREP,0.4213327475751828,0.3247590759614522,0.4695106024457135,0.4052008086607828,,,,,,,,,,,,,,,,,,,,
-ESM2,0.2977856665086115,0.281050143088217,0.4273702754644458,0.3354020283537581,,,,,,,,,,,,,,,,,,,,
-ESM3,0.5102468363444927,0.5762295810448107,0.4227236525442803,0.5030666899778612,,,,,,,,,,,,,,,,,,,,
-SaProt,0.4031774477652035,0.3690662827280969,0.2418927575878248,0.3380454960270417,,,,,,,,,,,,,,,,,,,,
-ProstT5,0.4474307637665665,0.4155957269059172,0.0806352476756064,0.3145539127826967,,,,,,,,,,,,,,,,,,,,
-ProtHGT-TAPE-MF-sim,0.0676426208867526,0.2256642052045639,0.1130999435347261,0.1354689232086809,0.1046625870719076,0.0238279343234809,0.0698222676221539,0.0661042630058474,0.0562899711836086,0.0114963837042151,0.0325825354877617,0.0334562967918618,0.3081152026374549,0.0863172211631897,0.0006866785551513,0.131706367451932,7.887475622858088e-46,7.483266677192571e-21,0.0014920117291723,0.0004973372430574,2.3657666044607863e-79,2.7765463702827703e-27,0.0001444234657429,4.814115524765194e-05
-ProtHGT-TAPE-BP-sim,0.4424859852307816,0.3767270633862561,0.2706400046729882,0.3632843510966753,0.2143909167941879,-0.0071818570350743,0.1447744236104239,0.1173278277898458,0.2117889857352714,-0.0018704341207202,0.0746192793045373,0.0948459436396961,2.134408374049528e-12,3.0576812552093345e-05,6.2630970437801054e-09,1.0194359261181831e-05,1.2912840671594308e-189,1.0829837680869216e-84,0.3384619390274673,0.1128206463424891,0.0,7.553382437897129e-136,0.5363729565044189,0.1787909855014729
-ProtHGT-TAPE-CC-sim,0.2212604798497097,0.4630823969388991,0.1270186335403726,0.2704538367763271,0.085973478542632,0.1015261525058111,0.0479394582610972,0.0784796964365135,0.1162193876485697,0.0557492273127652,0.0472710508457386,0.0730798886023578,0.0007466654287222,0.0538726534837088,2.976628727273831e-13,0.0182064396375762,1.981044607509484e-31,1.3018414706922815e-10,6.331641278776996e-42,4.339471568974272e-11,0.0,1.4666915843160296e-55,5.904927474930695e-76,4.888971947720099e-56
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-ProtHGT-ProtT5-CC-sim,-0.1611683471066122,0.4360532056720397,0.2133199633949259,0.1627349406534511,0.0483196915996448,0.052080276149592,-0.0059642086679254,0.0314785863604371,0.028616800255214,0.0618820703296473,0.0550623536726336,0.0485204080858317,0.0146241248213838,0.0011054118617711,9.139771576546976e-12,0.0052431788974315,5.895216744065964e-11,0.424213195718257,3.758912026765176e-12,0.141404398593656,9.409658491972688e-22,9.30168819867313e-75,1.4364215564713362e-93,3.1365528306575642e-22
-ProtHGT-ProtT5-BP-sim,0.4428227394002378,0.3422052738196235,0.3019071633014661,0.3623117255071091,0.1664744430958502,0.02445474411873,0.1203713554443648,0.1037668475529817,0.192658828730332,-0.0026714534349827,0.0996770164875359,0.0965547972609617,2.0449554563548134e-12,2.9653468953302774e-06,1.6007642027145069e-07,1.0418084535190616e-06,4.540350859830304e-114,6.22173661274808e-59,0.0011148671571486,0.0003716223857162,0.0,2.580401976701932e-241,0.3761626584621718,0.1253875528207239
-ProtHGT-ESM2-BP-sim,0.3847551287560082,0.3351541804456603,0.219428921902685,0.3131127437014511,0.1301583536501021,0.0200412462911787,0.0698632597882439,0.0733542865765082,0.1473732693228525,0.0082744328947388,0.0419182893687102,0.0658553305287672,1.701138467467754e-09,0.0007852072573699,2.962547893906677e-07,0.0002618350710992,4.272817257694715e-70,7.102477664065676e-21,0.00787956261439,0.0026265208714633,0.0,4.639641168342781e-44,0.0064572489544018,0.0021524163181339
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-ProtHGT-TAPE-sim,0.162571322934258,0.3788436899423446,0.1408730699585272,0.2274293609450433,0.1275519972633517,0.0532139726972253,0.0805145733501943,0.0870935144369238,0.0951652183848205,0.0275043259658933,0.0459752173293225,0.0562149205600121,0.0137743131590415,0.0323422958435411,5.069516408871396e-09,0.0153722046906997,2.2839880541708807e-67,3.243752781991338e-27,1.2714847676303249e-12,4.238282558767761e-13,8.763484360762092e-224,1.1923654894510878e-52,9.5652004262136e-20,3.1884001420712e-20
-ProtHGT-ProtT5-sim,-0.0934327940603359,0.4167146406496182,0.2127358398722716,0.1786725621538513,0.053133156625212,0.0656871861781072,0.0523244307275043,0.0570482578436079,0.0428466022625695,0.0511287699496268,0.0786334438219018,0.057536272011366,0.1587636030873938,0.0011416046342326,8.854282395819451e-11,0.053301735936723,6.048628196921009e-13,2.2897060229736265e-12,1.8804127047153322e-18,9.648569076928106e-13,1.0334402001368028e-46,1.1107962777542873e-150,1.9643107021904622e-64,3.444800667122676e-47
-ProtHGT-ESM2-sim,0.16378143954912916,0.38159119240957806,0.21042855195778737,0.2519337279721649,0.12113896355194584,0.06865639492264644,0.09517753505562324,0.09499096451007183,0.0901291725605845,0.06448500618634291,0.07343385649042149,0.07601601174578297,0.013076438537061833,0.00129545911264789,3.844079424476974e-09,0.00479063383126305,6.76333177414913e-61,2.0783151724625092e-37,8.034805491770392e-20,2.6782684972567974e-20,5.2055994770096916e-200,1.2837985227281428e-131,3.467509401898833e-100,1.155836467299611e-100
+Method;sparse_MF_correlation;sparse_CC_correlation;sparse_BP_correlation;sparse_Ave_correlation;200_MF_correlation;200_CC_correlation;200_BP_correlation;200_Ave_correlation;500_MF_correlation;500_CC_correlation;500_BP_correlation;500_Ave_correlation
+AAC;-0.0120530487301072;0.0912116785938685;0.2141018739428611;0.0977535012688741;;;;;;;;
+APAAC;0.1716732195001037;0.240874262539882;0.2735843497262189;0.2287106105887349;;;;;;;;
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+MUT2VEC;0.5462247913812742;0.3948878923766817;0.5799222876570942;0.50701165713835;;;;;;;;
+GENE2VEC;0.1756222504801268;0.359607993537279;0.407953665862896;0.3143946366267673;;;;;;;;
+XLNET;0.2270935836252544;0.2549405428464779;0.3090004241910071;0.2636781835542465;;;;;;;;
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+CPC-PROT;0.0604542610865414;-0.0869798610000177;0.1090657842339456;0.0275133947734897;;;;;;;;
+ESM1B;0.384697625027269;0.3731936223537567;0.4151856052080267;0.3910256175296842;;;;;;;;
+BERT-BFD;0.2918631086847955;0.4157201514424359;0.3234845992693526;0.3436892864655279;;;;;;;;
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+ALBERT;0.2218813721583892;0.3181002150766988;0.3690126305036619;0.3029980725795833;;;;;;;;
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+HMMER;0.1373599246282869;0.3218542802568603;0.1577102930764373;0.2056414993205282;;;;;;;;
+UNIREP;0.4213327475751828;0.3247590759614522;0.4695106024457135;0.4052008086607828;;;;;;;;
+ESM2;0.2977856665086115;0.281050143088217;0.4273702754644458;0.3354020283537581;;;;;;;;
+ESM3;0.5102468363444927;0.5762295810448107;0.4227236525442803;0.5030666899778612;;;;;;;;
+SaProt;0.4031774477652035;0.3690662827280969;0.2418927575878248;0.3380454960270417;;;;;;;;
+ProstT5;0.4474307637665665;0.4155957269059172;0.0806352476756064;0.3145539127826967;;;;;;;;
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