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Update app.py
Browse files
app.py
CHANGED
@@ -29,24 +29,28 @@ def login():
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if "authenticated" not in st.session_state:
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st.session_state.authenticated = False
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if not st.session_state.authenticated:
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login()
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st.stop()
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# ------------------ Configuration ------------------
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st.set_page_config(page_title="AI Pathology Assistant", layout="wide", initial_sidebar_state="collapsed")
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st.title("𧬠AI Pathology Assistant")
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st.caption("AI-powered exploration of pathology, anatomy, and histology documents via OCR + GPT")
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OPENAI_API_KEY = os.environ.get("OPENAI_API_KEY")
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if not OPENAI_API_KEY:
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st.error("β Missing OPENAI_API_KEY environment variable.")
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st.stop()
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client = OpenAI(api_key=OPENAI_API_KEY)
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ASSISTANT_ID = "asst_jXDSjCG8LI4HEaFEcjFVq8KB"
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# ------------------
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if "messages" not in st.session_state:
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st.session_state.messages = []
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if "thread_id" not in st.session_state:
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@@ -66,7 +70,7 @@ with st.sidebar:
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st.session_state.pending_prompt = None
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st.rerun()
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show_image = st.toggle("πΈ Show Images", value=True)
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keyword = st.text_input("Keyword Search", placeholder="e.g. mitosis, carcinoma")
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if st.button("π Search") and keyword:
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st.session_state.pending_prompt = f"Find clauses or references related to: {keyword}"
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@@ -87,7 +91,7 @@ with st.sidebar:
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if action != actions[0]:
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st.session_state.pending_prompt = action
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# ------------------ Chat UI ------------------
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chat_col, image_col = st.columns([2, 1])
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with chat_col:
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@@ -127,20 +131,15 @@ with chat_col:
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messages = client.beta.threads.messages.list(thread_id=st.session_state.thread_id)
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for m in reversed(messages.data):
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if m.role == "assistant":
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image_matches = re.findall(
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r'https://raw\.githubusercontent\.com/AndrewLORTech/witspathologai/main/[
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)
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st.session_state.image_urls = image_matches
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reply_cleaned = re.sub(
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r'https://raw\.githubusercontent\.com/AndrewLORTech/witspathologai/main/[^"]+?\.png',
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'[Image reference available in Slide Previews β]',
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raw_reply
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)
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st.session_state.messages.append({"role": "assistant", "content": reply_cleaned})
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break
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else:
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st.error("β Assistant failed to respond.")
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@@ -152,19 +151,25 @@ with chat_col:
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with st.chat_message(msg["role"]):
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st.markdown(msg["content"], unsafe_allow_html=True)
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# ------------------ Image Display
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with image_col:
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if show_image and st.session_state.image_urls:
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st.markdown("### πΌοΈ
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for raw_url in st.session_state.image_urls:
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try:
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_, raw_path = raw_url.split("githubusercontent.com/", 1)
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segments = raw_path.strip().split("/")
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encoded_segments = [quote(seg) for seg in segments]
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encoded_url = "https://raw.githubusercontent.com/" + "/".join(encoded_segments)
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r = requests.get(encoded_url)
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r.raise_for_status()
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img = Image.open(BytesIO(r.content))
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st.image(img, caption=f"π· {encoded_segments[-1]}", use_container_width=True)
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except Exception as e:
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st.error(f"β Failed to load image: {e}")
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if "authenticated" not in st.session_state:
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st.session_state.authenticated = False
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if not st.session_state.authenticated:
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login()
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st.stop()
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# ------------------ App Configuration ------------------
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st.set_page_config(page_title="AI Pathology Assistant", layout="wide", initial_sidebar_state="collapsed")
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st.title("𧬠AI Pathology Assistant")
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st.caption("AI-powered exploration of pathology, anatomy, and histology documents via OCR + GPT")
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# ------------------ Load OpenAI API Key ------------------
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OPENAI_API_KEY = os.environ.get("OPENAI_API_KEY")
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if not OPENAI_API_KEY:
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st.error("β Missing OPENAI_API_KEY environment variable.")
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st.stop()
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client = OpenAI(api_key=OPENAI_API_KEY)
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# ------------------ Assistant Configuration ------------------
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ASSISTANT_ID = "asst_jXDSjCG8LI4HEaFEcjFVq8KB" # Replace with your actual assistant ID
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# ------------------ Session State ------------------
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if "messages" not in st.session_state:
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st.session_state.messages = []
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if "thread_id" not in st.session_state:
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st.session_state.pending_prompt = None
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st.rerun()
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show_image = st.toggle("πΈ Show Slide Images", value=True)
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keyword = st.text_input("Keyword Search", placeholder="e.g. mitosis, carcinoma")
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if st.button("π Search") and keyword:
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st.session_state.pending_prompt = f"Find clauses or references related to: {keyword}"
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if action != actions[0]:
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st.session_state.pending_prompt = action
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# ------------------ Main Chat UI ------------------
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chat_col, image_col = st.columns([2, 1])
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with chat_col:
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messages = client.beta.threads.messages.list(thread_id=st.session_state.thread_id)
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for m in reversed(messages.data):
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if m.role == "assistant":
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reply = m.content[0].text.value
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st.session_state.messages.append({"role": "assistant", "content": reply})
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# β
Extract GitHub raw image URLs
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image_matches = re.findall(
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r'https://raw\.githubusercontent\.com/AndrewLORTech/witspathologai/main/[^\s\n]+\.png',
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reply
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)
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st.session_state.image_urls = image_matches
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break
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else:
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st.error("β Assistant failed to respond.")
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with st.chat_message(msg["role"]):
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st.markdown(msg["content"], unsafe_allow_html=True)
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# ------------------ Image Display with Encoding Fix ------------------
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with image_col:
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if show_image and st.session_state.image_urls:
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st.markdown("### πΌοΈ Slide Previews")
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for raw_url in st.session_state.image_urls:
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try:
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# Extract everything after the domain and encode each path segment
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if "githubusercontent.com" not in raw_url:
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continue
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_, raw_path = raw_url.split("githubusercontent.com/", 1)
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segments = raw_path.strip().split("/")
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encoded_segments = [quote(seg) for seg in segments]
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encoded_url = "https://raw.githubusercontent.com/" + "/".join(encoded_segments)
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# Load and display
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r = requests.get(encoded_url)
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r.raise_for_status()
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img = Image.open(BytesIO(r.content))
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st.image(img, caption=f"π· {encoded_segments[-1]}", use_container_width=True)
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except Exception as e:
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st.error(f"β Failed to load image from {raw_url}: {e}")
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