app.py

import streamlit as st
import spacy
import torch
from transformers import BertTokenizer, BertModel
from transformers.models.bert.modeling_bert import BertForMaskedLM

from models.spabert.models.spatial_bert_model import SpatialBertConfig, SpatialBertForMaskedLM, SpatialBertModel
from models.spabert.utils.common_utils import load_spatial_bert_pretrained_weights
from models.spabert.datasets.osm_sample_loader import PbfMapDataset
from torch.utils.data import DataLoader

from PIL import Image

device = torch.device('cpu')


#Spacy Initialization Section
nlp = spacy.load("./models/en_core_web_sm")


#BERT Initialization Section
bert_tokenizer = BertTokenizer.from_pretrained("bert-base-uncased")
bert_model = BertModel.from_pretrained("bert-base-uncased")
bert_model.to(device)
bert_model.eval()


#SpaBERT Initialization Section
data_file_path = 'models/spabert/datasets/SpaBERTPivots.json'    #Sample file otherwise this model will take too long on CPU.
pretrained_model_path = 'models/spabert/datasets/fine-spabert-base-uncased-finetuned-osm-mn.pth'

config = SpatialBertConfig()
config.output_hidden_states = True
spaBERT_model = SpatialBertForMaskedLM(config)

pre_trained_model = torch.load(pretrained_model_path, map_location=torch.device('cpu'))
spaBERT_model.load_state_dict(bert_model.state_dict(), strict = False)
spaBERT_model.load_state_dict(pre_trained_model, strict=False)

spaBERT_model.to(device)
spaBERT_model.eval()


#Load data using SpatialDataset
spatialDataset = PbfMapDataset(data_file_path = data_file_path,
                                        tokenizer = bert_tokenizer,
                                        max_token_len = 256,                          #Originally 300
                                        #max_token_len = max_seq_length,              #Originally 300
                                        distance_norm_factor = 0.0001,
                                        spatial_dist_fill = 20,
                                        with_type = False,
                                        sep_between_neighbors = True,    
                                        label_encoder = None,             
                                        mode = None)                                  #If set to None it will use the full dataset for mlm

data_loader = DataLoader(spatialDataset, batch_size=1, num_workers=0, shuffle=False, pin_memory=False, drop_last=False) 

# Create a dictionary to map entity names to indices
entity_index_dict = {entity['pivot_name']: i for i, entity in enumerate(spatialDataset)}

# Ensure names are stored in lowercase for case-insensitive matching
entity_index_dict = {name.lower(): index for name, index in entity_index_dict.items()}


#Pre-aquire the SpaBERT embeddings for all geo-entities within our dataset
def process_entity(batch, model, device):
    input_ids = batch['masked_input'].to(device)
    attention_mask = batch['attention_mask'].to(device)
    position_list_x = batch['norm_lng_list'].to(device)
    position_list_y = batch['norm_lat_list'].to(device)
    sent_position_ids = batch['sent_position_ids'].to(device)
    pseudo_sentence = batch['pseudo_sentence'].to(device)

    # Convert tensor to list of token IDs, and decode them into a readable sentence
    pseudo_sentence_decoded = bert_tokenizer.decode(pseudo_sentence[0].tolist(), skip_special_tokens=False)

    with torch.no_grad():
        outputs = spaBERT_model(#input_ids=input_ids,
                        input_ids=pseudo_sentence,
                        attention_mask=attention_mask,
                        sent_position_ids=sent_position_ids,
                        position_list_x=position_list_x,
                        position_list_y=position_list_y)
                        #NOTE: we are ommitting the pseudo_sentence here. Verify that this is correct

    spaBERT_embedding = outputs.hidden_states[-1].to(device)

    # Extract the [CLS] token embedding (first token)
    spaBERT_embedding = spaBERT_embedding[:, 0, :].detach()  # [batch_size, hidden_size]

    #return pivot_embeddings.cpu().numpy(), input_ids.cpu().numpy()
    return spaBERT_embedding, input_ids

spaBERT_embeddings = []
for batch in (data_loader):
    spaBERT_embedding, input_ids = process_entity(batch, spaBERT_model, device)
    spaBERT_embeddings.append(spaBERT_embedding)

embedding_cache = {}


#Get BERT Embedding for review
def get_bert_embedding(review_text):
    #tokenize review
    inputs = bert_tokenizer(review_text, return_tensors='pt', padding=True, truncation=True).to(device)
    
    # Forward pass through the BERT model
    with torch.no_grad():
        outputs = bert_model(**inputs)

    # Extract embeddings from the last hidden state
    bert_embedding = outputs.last_hidden_state[:, 0, :].detach()     #CLS Token
    return bert_embedding


#Get SpaBERT Embedding for geo-entity
def get_spaBert_embedding(entity):
    entity_index = entity_index_dict.get(entity.lower(), None)
    if entity_index is None:
        st.write("Got Bert embedding for: ", entity)
        return get_bert_embedding(entity)                            #Fallback in-case SpaBERT could not resolve entity to retrieve embedding. Rare-cases only.
    else:
        st.write("Got SpaBert embedding for: ", entity)
        return spaBERT_embeddings[entity_index]

        
#Go through each review, identify all geo-entities, then extract their SpaBERT embedings
def processSpatialEntities(review, nlp):
    doc = nlp(review)
    entity_spans = [(ent.start, ent.end, ent.text, ent.label_) for ent in doc.ents]
    token_embeddings = []

    # Iterate over each entity span and process only geo entities
    for start, end, text, label in entity_spans:
        if label in ['FAC', 'ORG', 'LOC', 'GPE']:  # Filter to geo-entities
            spaBert_emb = get_spaBert_embedding(text)
            token_embeddings.append(spaBert_emb)
            st.write("Geo-Entity Found in review: ", text)

    token_embeddings = torch.stack(token_embeddings, dim=0)
    processed_embedding = token_embeddings.mean(dim=0)  # Shape: (768)
    processed_embedding = processed_embedding.unsqueeze(0)  # Shape: (1, 768)
    return processed_embedding


# Function to read reviews from a text file
def load_reviews_from_file(file_path):
    reviews = {}
    try:
        with open(file_path, 'r', encoding='utf-8') as file:
            for i, line in enumerate(file):
                line = line.strip()
                if line:  # Ensure the line is not empty
                    reviews[f"Review {i + 1}"] = line
    except FileNotFoundError:
        st.error(f"File not found: {file_path}")
    return reviews


st.title("SpaGAN Demo")
st.write("Enter a text, and the system will highlight the geo-entities within it.")

# Define a color map and descriptions for different entity types
COLOR_MAP = {
    'FAC': ('red', 'Facilities (e.g., buildings, airports)'),
    'ORG': ('blue', 'Organizations (e.g., companies, institutions)'),
    'LOC': ('purple', 'Locations (e.g., mountain ranges, water bodies)'),
    'GPE': ('green', 'Geopolitical Entities (e.g., countries, cities)')
}

# Display the color key
st.write("**Color Key:**")
for label, (color, description) in COLOR_MAP.items():
    st.markdown(f"- **{label}**: <span style='color:{color}'>{color}</span> - {description}", unsafe_allow_html=True)

review_file_path = "models/spabert/datasets/SampleReviews.txt"
example_reviews = load_reviews_from_file(review_file_path)

# Dropdown for selecting an example review
user_input = st.selectbox("Select an example review", options=list(example_reviews.keys()))

# Get the selected review text
selected_review = example_reviews[user_input]

# Process the text when the button is clicked
if st.button("Highlight Geo-Entities"):
    if selected_review.strip():
        bert_embedding = get_bert_embedding(selected_review)
        st.write("Review Embedding Shape:", bert_embedding.shape)
        
        spaBert_embedding = processSpatialEntities(selected_review,nlp)
        st.write("Geo-Entities embedding shape: ", spaBert_embedding.shape)

        #combine the embeddings (NOTE: come back and update after testing)
        combined_embedding = torch.cat((bert_embedding,spaBERT_embeddings[0]),dim=-1)
        st.write("Concatenated Embedding Shape:", combined_embedding.shape)
        st.write("Concatenated Embedding:", combined_embedding)
        
        # Process the text using spaCy
        doc = nlp(selected_review)
        
        # Highlight geo-entities with different colors
        highlighted_text = selected_review
        for ent in reversed(doc.ents):
            if ent.label_ in COLOR_MAP:
                color = COLOR_MAP[ent.label_][0]
                highlighted_text = (
                    highlighted_text[:ent.start_char] +
                    f"<span style='color:{color}; font-weight:bold'>{ent.text}</span>" + 
                    highlighted_text[ent.end_char:]
                )

        # Display the highlighted text with HTML support
        st.markdown(highlighted_text, unsafe_allow_html=True)
    else:
        st.error("Please select a review.")