Spaces:
Running
Running
Update app.py
Browse files
app.py
CHANGED
@@ -43,10 +43,14 @@ def pubmed_search(mesh_terms, email, start_date, end_date):
|
|
43 |
return "Please provide MeSH terms and email.", None, None
|
44 |
|
45 |
# Join MeSH terms for query
|
46 |
-
query = " AND ".join([f'"{term}"[MeSH Terms]' for term in mesh_terms])
|
|
|
|
|
|
|
|
|
47 |
|
48 |
# Fetch PubMed IDs
|
49 |
-
pubmed_ids = fetch_pubmed(query, email,
|
50 |
if not pubmed_ids:
|
51 |
return "No articles found for the given search terms and date range.", None, None
|
52 |
|
@@ -76,8 +80,8 @@ with gr.Blocks() as app:
|
|
76 |
add_button = gr.Button("Add MeSH Term")
|
77 |
mesh_terms_box = gr.Textbox(label="Added MeSH Terms", interactive=False, lines=2)
|
78 |
|
79 |
-
start_date = gr.
|
80 |
-
end_date = gr.
|
81 |
email_input = gr.Textbox(label="Email", placeholder="Your email (required by PubMed API)", interactive=True)
|
82 |
|
83 |
search_button = gr.Button("Search PubMed")
|
@@ -89,14 +93,18 @@ with gr.Blocks() as app:
|
|
89 |
# Logic for adding MeSH terms
|
90 |
def add_mesh_term(term, terms):
|
91 |
if term.strip():
|
92 |
-
|
93 |
-
|
94 |
-
return ", ".join(
|
95 |
return terms
|
96 |
|
97 |
# Bind functions to interface
|
98 |
add_button.click(fn=add_mesh_term, inputs=[mesh_term_input, mesh_terms_box], outputs=mesh_terms_box)
|
99 |
-
search_button.click(
|
|
|
|
|
|
|
|
|
100 |
|
101 |
# Launch app
|
102 |
app.launch()
|
|
|
43 |
return "Please provide MeSH terms and email.", None, None
|
44 |
|
45 |
# Join MeSH terms for query
|
46 |
+
query = " AND ".join([f'"{term}"[MeSH Terms]' for term in mesh_terms.split(", ")])
|
47 |
+
|
48 |
+
# Format the start and end dates
|
49 |
+
start_date_str = start_date.strftime("%Y/%m/%d %H:%M:%S")
|
50 |
+
end_date_str = end_date.strftime("%Y/%m/%d %H:%M:%S")
|
51 |
|
52 |
# Fetch PubMed IDs
|
53 |
+
pubmed_ids = fetch_pubmed(query, email, start_date_str, end_date_str)
|
54 |
if not pubmed_ids:
|
55 |
return "No articles found for the given search terms and date range.", None, None
|
56 |
|
|
|
80 |
add_button = gr.Button("Add MeSH Term")
|
81 |
mesh_terms_box = gr.Textbox(label="Added MeSH Terms", interactive=False, lines=2)
|
82 |
|
83 |
+
start_date = gr.DateTime(label="Start Date and Time")
|
84 |
+
end_date = gr.DateTime(label="End Date and Time")
|
85 |
email_input = gr.Textbox(label="Email", placeholder="Your email (required by PubMed API)", interactive=True)
|
86 |
|
87 |
search_button = gr.Button("Search PubMed")
|
|
|
93 |
# Logic for adding MeSH terms
|
94 |
def add_mesh_term(term, terms):
|
95 |
if term.strip():
|
96 |
+
terms_list = terms.split(", ") if terms else []
|
97 |
+
terms_list.append(term.strip())
|
98 |
+
return ", ".join(terms_list)
|
99 |
return terms
|
100 |
|
101 |
# Bind functions to interface
|
102 |
add_button.click(fn=add_mesh_term, inputs=[mesh_term_input, mesh_terms_box], outputs=mesh_terms_box)
|
103 |
+
search_button.click(
|
104 |
+
fn=pubmed_search,
|
105 |
+
inputs=[mesh_terms_box, email_input, start_date, end_date],
|
106 |
+
outputs=[status_output, markdown_file, text_file]
|
107 |
+
)
|
108 |
|
109 |
# Launch app
|
110 |
app.launch()
|