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  1. app.py +665 -6
  2. requirements.txt +6 -9
app.py CHANGED
@@ -1,10 +1,669 @@
 
 
 
 
 
 
1
  import os
 
 
2
 
3
- # Import from casl_analysis.py for full functionality
4
- from casl_analysis import create_interface
 
5
 
6
- # Hugging Face Spaces expects a specific layout and filename
7
- app = create_interface()
 
 
 
 
 
 
 
 
8
 
9
- # Set title for Hugging Face Spaces/Gradio deployment
10
- app.title = "CASL Speech Analysis Tool"
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ import gradio as gr
2
+ import boto3
3
+ import json
4
+ import numpy as np
5
+ import re
6
+ import logging
7
  import os
8
+ from datetime import datetime
9
+ import tempfile
10
 
11
+ # Configure logging
12
+ logging.basicConfig(level=logging.INFO)
13
+ logger = logging.getLogger(__name__)
14
 
15
+ # Try to import optional dependencies
16
+ try:
17
+ from reportlab.lib.pagesizes import letter
18
+ from reportlab.lib import colors
19
+ from reportlab.platypus import SimpleDocTemplate, Paragraph, Spacer, Table, TableStyle
20
+ from reportlab.lib.styles import getSampleStyleSheet, ParagraphStyle
21
+ REPORTLAB_AVAILABLE = True
22
+ except ImportError:
23
+ REPORTLAB_AVAILABLE = False
24
+ logger.info("ReportLab not available - PDF export disabled")
25
 
26
+ try:
27
+ import speech_recognition as sr
28
+ import pydub
29
+ SPEECH_RECOGNITION_AVAILABLE = True
30
+ except ImportError:
31
+ SPEECH_RECOGNITION_AVAILABLE = False
32
+ logger.info("Speech recognition not available - audio transcription will use demo mode")
33
+
34
+ # AWS credentials (optional)
35
+ AWS_ACCESS_KEY = os.getenv("AWS_ACCESS_KEY", "")
36
+ AWS_SECRET_KEY = os.getenv("AWS_SECRET_KEY", "")
37
+ AWS_REGION = os.getenv("AWS_REGION", "us-east-1")
38
+
39
+ # Initialize AWS client if available
40
+ bedrock_client = None
41
+ if AWS_ACCESS_KEY and AWS_SECRET_KEY:
42
+ try:
43
+ bedrock_client = boto3.client(
44
+ 'bedrock-runtime',
45
+ aws_access_key_id=AWS_ACCESS_KEY,
46
+ aws_secret_access_key=AWS_SECRET_KEY,
47
+ region_name=AWS_REGION
48
+ )
49
+ logger.info("Bedrock client initialized successfully")
50
+ except Exception as e:
51
+ logger.error(f"Failed to initialize AWS Bedrock client: {str(e)}")
52
+ else:
53
+ logger.info("AWS credentials not configured - using demo mode")
54
+
55
+ # Data directories
56
+ DATA_DIR = os.environ.get("DATA_DIR", "patient_data")
57
+
58
+ def ensure_data_dirs():
59
+ """Ensure data directories exist"""
60
+ try:
61
+ os.makedirs(DATA_DIR, exist_ok=True)
62
+ logger.info(f"Data directories created: {DATA_DIR}")
63
+ except Exception as e:
64
+ logger.warning(f"Could not create data directories: {str(e)}")
65
+ logger.info("Using temporary directory for data storage")
66
+
67
+ ensure_data_dirs()
68
+
69
+ # Sample transcripts
70
+ SAMPLE_TRANSCRIPTS = {
71
+ "Beach Trip (Child)": """*PAR: today I would &-um like to talk about &-um a fun trip I took last &-um summer with my family.
72
+ *PAR: we went to the &-um &-um beach [//] no to the mountains [//] I mean the beach actually.
73
+ *PAR: there was lots of &-um &-um swimming and &-um sun.
74
+ *PAR: we [/] we stayed for &-um three no [//] four days in a &-um hotel near the water [: ocean] [*].
75
+ *PAR: my favorite part was &-um building &-um castles with sand.
76
+ *PAR: sometimes I forget [//] forgetted [: forgot] [*] what they call those things we built.
77
+ *PAR: my brother he [//] he helped me dig a big hole.
78
+ *PAR: we saw [/] saw fishies [: fish] [*] swimming in the water.
79
+ *PAR: sometimes I wonder [/] wonder where fishies [: fish] [*] go when it's cold.
80
+ *PAR: maybe they have [/] have houses under the water.
81
+ *PAR: after swimming we [//] I eat [: ate] [*] &-um ice cream with &-um chocolate things on top.
82
+ *PAR: what do you call those &-um &-um sprinkles! that's the word.
83
+ *PAR: my mom said to &-um that I could have &-um two scoops next time.
84
+ *PAR: I want to go back to the beach [/] beach next year.""",
85
+
86
+ "School Day (Adolescent)": """*PAR: yesterday was &-um kind of a weird day at school.
87
+ *PAR: I had this big test in math and I was like really nervous about it.
88
+ *PAR: when I got there [//] when I got to class the teacher said we could use calculators.
89
+ *PAR: I was like &-oh &-um that's good because I always mess up the &-um the calculations.
90
+ *PAR: there was this one problem about &-um what do you call it &-um geometry I think.
91
+ *PAR: I couldn't remember the formula for [//] I mean I knew it but I just couldn't think of it.
92
+ *PAR: so I raised my hand and asked the teacher and she was really nice about it.
93
+ *PAR: after the test me and my friends went to lunch and we talked about how we did.
94
+ *PAR: everyone was saying it was hard but I think I did okay.
95
+ *PAR: oh and then in English class we had to read our essays out loud.
96
+ *PAR: I hate doing that because I get really nervous and I start talking fast.
97
+ *PAR: but the teacher said mine was good which made me feel better.""",
98
+
99
+ "Adult Recovery": """*PAR: I &-um I want to talk about &-uh my &-um recovery.
100
+ *PAR: it's been &-um [//] it's hard to &-um to find the words sometimes.
101
+ *PAR: before the &-um the stroke I was &-um working at the &-uh at the bank.
102
+ *PAR: now I have to &-um practice speaking every day with my therapist.
103
+ *PAR: my wife she [//] she helps me a lot at home.
104
+ *PAR: we do &-um exercises together like &-uh reading and &-um talking about pictures.
105
+ *PAR: sometimes I get frustrated because I know what I want to say but &-um the words don't come out right.
106
+ *PAR: but I'm getting better little by little.
107
+ *PAR: the doctor says I'm making good progress.
108
+ *PAR: I hope to go back to work someday but right now I'm focusing on &-um getting better."""
109
+ }
110
+
111
+ def call_bedrock(prompt, max_tokens=4096):
112
+ """Call AWS Bedrock API or return demo response"""
113
+ if not bedrock_client:
114
+ return generate_demo_response(prompt)
115
+
116
+ try:
117
+ body = json.dumps({
118
+ "anthropic_version": "bedrock-2023-05-31",
119
+ "max_tokens": max_tokens,
120
+ "messages": [{"role": "user", "content": prompt}],
121
+ "temperature": 0.3,
122
+ "top_p": 0.9
123
+ })
124
+
125
+ response = bedrock_client.invoke_model(
126
+ body=body,
127
+ modelId='anthropic.claude-3-sonnet-20240229-v1:0',
128
+ accept='application/json',
129
+ contentType='application/json'
130
+ )
131
+ response_body = json.loads(response.get('body').read())
132
+ return response_body['content'][0]['text']
133
+ except Exception as e:
134
+ logger.error(f"Error calling Bedrock: {str(e)}")
135
+ return generate_demo_response(prompt)
136
+
137
+ def generate_demo_response(prompt):
138
+ """Generate demo analysis response based on transcript patterns"""
139
+ # Extract transcript from prompt
140
+ transcript_match = re.search(r'TRANSCRIPT:\s*(.*?)(?=\n\n|\Z)', prompt, re.DOTALL)
141
+ transcript = transcript_match.group(1) if transcript_match else ""
142
+
143
+ # Count speech patterns
144
+ um_count = len(re.findall(r'&-um|&-uh', transcript))
145
+ revision_count = len(re.findall(r'\[//\]', transcript))
146
+ repetition_count = len(re.findall(r'\[/\]', transcript))
147
+ error_count = len(re.findall(r'\[\*\]', transcript))
148
+
149
+ # Generate realistic scores based on patterns
150
+ fluency_score = max(70, 100 - (um_count * 2))
151
+ syntactic_score = max(70, 100 - (error_count * 3))
152
+ semantic_score = max(75, 105 - (revision_count * 2))
153
+
154
+ # Convert to percentiles
155
+ fluency_percentile = int(np.interp(fluency_score, [70, 85, 100, 115], [5, 16, 50, 84]))
156
+ syntactic_percentile = int(np.interp(syntactic_score, [70, 85, 100, 115], [5, 16, 50, 84]))
157
+ semantic_percentile = int(np.interp(semantic_score, [70, 85, 100, 115], [5, 16, 50, 84]))
158
+
159
+ def get_performance_level(score):
160
+ if score < 70: return "Well Below Average"
161
+ elif score < 85: return "Below Average"
162
+ elif score < 115: return "Average"
163
+ else: return "Above Average"
164
+
165
+ return f"""<SPEECH_FACTORS_START>
166
+ Difficulty producing fluent speech: {um_count + revision_count}, {100 - fluency_percentile}
167
+ Examples:
168
+ - Frequent use of fillers (&-um, &-uh) observed throughout transcript
169
+ - Self-corrections and revisions interrupt speech flow
170
+
171
+ Word retrieval issues: {um_count // 2 + 1}, {90 - semantic_percentile}
172
+ Examples:
173
+ - Hesitations and pauses before content words noted
174
+ - Circumlocutions and word-finding difficulties evident
175
+
176
+ Grammatical errors: {error_count}, {85 - syntactic_percentile}
177
+ Examples:
178
+ - Morphological errors marked with [*] in transcript
179
+ - Verb tense and agreement inconsistencies observed
180
+
181
+ Repetitions and revisions: {repetition_count + revision_count}, {80 - fluency_percentile}
182
+ Examples:
183
+ - Self-corrections marked with [//] throughout sample
184
+ - Word and phrase repetitions marked with [/] noted
185
+ <SPEECH_FACTORS_END>
186
+
187
+ <CASL_SKILLS_START>
188
+ Lexical/Semantic Skills: Standard Score ({semantic_score}), Percentile Rank ({semantic_percentile}%), {get_performance_level(semantic_score)}
189
+ Examples:
190
+ - Vocabulary diversity and semantic precision assessed
191
+ - Word-finding strategies and retrieval patterns analyzed
192
+
193
+ Syntactic Skills: Standard Score ({syntactic_score}), Percentile Rank ({syntactic_percentile}%), {get_performance_level(syntactic_score)}
194
+ Examples:
195
+ - Sentence structure complexity and grammatical accuracy evaluated
196
+ - Morphological skill development measured
197
+
198
+ Supralinguistic Skills: Standard Score ({fluency_score}), Percentile Rank ({fluency_percentile}%), {get_performance_level(fluency_score)}
199
+ Examples:
200
+ - Discourse organization and narrative coherence reviewed
201
+ - Pragmatic language use and communication effectiveness assessed
202
+ <CASL_SKILLS_END>
203
+
204
+ <TREATMENT_RECOMMENDATIONS_START>
205
+ - Implement word-finding strategies with semantic feature analysis and phonemic cuing
206
+ - Practice sentence formulation exercises targeting grammatical accuracy and complexity
207
+ - Use narrative structure activities with visual supports to improve discourse organization
208
+ - Incorporate self-monitoring techniques to increase awareness of speech patterns
209
+ - Apply fluency shaping strategies to reduce disfluencies and improve communication flow
210
+ <TREATMENT_RECOMMENDATIONS_END>
211
+
212
+ <EXPLANATION_START>
213
+ The language sample demonstrates patterns consistent with expressive language challenges affecting fluency, word retrieval, and syntactic formulation. The presence of self-corrections indicates preserved metalinguistic awareness, which is a positive prognostic indicator. Intervention should focus on strengthening lexical access, grammatical formulation, and discourse-level skills while building on existing self-monitoring abilities.
214
+ <EXPLANATION_END>"""
215
+
216
+ def parse_casl_response(response):
217
+ """Parse structured response into components"""
218
+ def extract_section(text, section_name):
219
+ pattern = re.compile(f"<{section_name}_START>(.*?)<{section_name}_END>", re.DOTALL)
220
+ match = pattern.search(text)
221
+ return match.group(1).strip() if match else ""
222
+
223
+ sections = {
224
+ 'speech_factors': extract_section(response, 'SPEECH_FACTORS'),
225
+ 'casl_data': extract_section(response, 'CASL_SKILLS'),
226
+ 'treatment_suggestions': extract_section(response, 'TREATMENT_RECOMMENDATIONS'),
227
+ 'explanation': extract_section(response, 'EXPLANATION')
228
+ }
229
+
230
+ # Build formatted report
231
+ full_report = f"""# Speech Language Assessment Report
232
+
233
+ ## Speech Factors Analysis
234
+ {sections['speech_factors']}
235
+
236
+ ## CASL Skills Assessment
237
+ {sections['casl_data']}
238
+
239
+ ## Treatment Recommendations
240
+ {sections['treatment_suggestions']}
241
+
242
+ ## Clinical Explanation
243
+ {sections['explanation']}
244
+ """
245
+
246
+ return {
247
+ 'speech_factors': sections['speech_factors'],
248
+ 'casl_data': sections['casl_data'],
249
+ 'treatment_suggestions': sections['treatment_suggestions'],
250
+ 'explanation': sections['explanation'],
251
+ 'full_report': full_report,
252
+ 'raw_response': response
253
+ }
254
+
255
+ def analyze_transcript(transcript, age, gender):
256
+ """Analyze transcript using CASL framework"""
257
+ prompt = f"""
258
+ You are an expert speech-language pathologist conducting a comprehensive CASL-2 assessment.
259
+ Analyze this transcript for a {age}-year-old {gender} patient.
260
+
261
+ TRANSCRIPT:
262
+ {transcript}
263
+
264
+ Provide detailed analysis in this exact format:
265
+
266
+ <SPEECH_FACTORS_START>
267
+ Difficulty producing fluent speech: X, Y
268
+ Examples:
269
+ - "exact quote from transcript showing disfluency"
270
+ - "another example with specific evidence"
271
+
272
+ Word retrieval issues: X, Y
273
+ Examples:
274
+ - "quote showing word-finding difficulty"
275
+ - "example of circumlocution or pause"
276
+
277
+ Grammatical errors: X, Y
278
+ Examples:
279
+ - "quote showing morphological error"
280
+ - "example of syntactic difficulty"
281
+
282
+ Repetitions and revisions: X, Y
283
+ Examples:
284
+ - "quote showing self-correction"
285
+ - "example of repetition or revision"
286
+ <SPEECH_FACTORS_END>
287
+
288
+ <CASL_SKILLS_START>
289
+ Lexical/Semantic Skills: Standard Score (X), Percentile Rank (Y%), Performance Level
290
+ Examples:
291
+ - "specific vocabulary usage example"
292
+ - "semantic precision demonstration"
293
+
294
+ Syntactic Skills: Standard Score (X), Percentile Rank (Y%), Performance Level
295
+ Examples:
296
+ - "grammatical structure example"
297
+ - "morphological skill demonstration"
298
+
299
+ Supralinguistic Skills: Standard Score (X), Percentile Rank (Y%), Performance Level
300
+ Examples:
301
+ - "discourse organization example"
302
+ - "narrative coherence demonstration"
303
+ <CASL_SKILLS_END>
304
+
305
+ <TREATMENT_RECOMMENDATIONS_START>
306
+ - Specific, evidence-based treatment recommendation
307
+ - Another targeted intervention strategy
308
+ - Additional therapeutic approach with clear rationale
309
+ <TREATMENT_RECOMMENDATIONS_END>
310
+
311
+ <EXPLANATION_START>
312
+ Comprehensive clinical explanation of findings, their significance for diagnosis and prognosis, and relationship to functional communication needs.
313
+ <EXPLANATION_END>
314
+
315
+ Requirements:
316
+ 1. Use exact quotes from the transcript as evidence
317
+ 2. Provide realistic standard scores (70-130 range, mean=100, SD=15)
318
+ 3. Calculate appropriate percentiles based on age norms
319
+ 4. Give specific, actionable treatment recommendations
320
+ 5. Consider developmental expectations for the patient's age
321
+ """
322
+
323
+ response = call_bedrock(prompt)
324
+ return parse_casl_response(response)
325
+
326
+ def process_upload(file):
327
+ """Process uploaded transcript file"""
328
+ if file is None:
329
+ return ""
330
+
331
+ file_path = file.name
332
+ file_ext = os.path.splitext(file_path)[1].lower()
333
+
334
+ try:
335
+ if file_ext == '.cha':
336
+ # Process CHAT format file
337
+ with open(file_path, 'r', encoding='utf-8', errors='ignore') as f:
338
+ content = f.read()
339
+
340
+ # Extract participant lines
341
+ par_lines = []
342
+ inv_lines = []
343
+ for line in content.splitlines():
344
+ line = line.strip()
345
+ if line.startswith('*PAR:') or line.startswith('*CHI:'):
346
+ par_lines.append(line)
347
+ elif line.startswith('*INV:') or line.startswith('*EXA:'):
348
+ inv_lines.append(line)
349
+
350
+ # Combine all relevant lines
351
+ all_lines = []
352
+ for line in content.splitlines():
353
+ line = line.strip()
354
+ if any(line.startswith(prefix) for prefix in ['*PAR:', '*CHI:', '*INV:', '*EXA:']):
355
+ all_lines.append(line)
356
+
357
+ return '\n'.join(all_lines) if all_lines else content
358
+ else:
359
+ # Read as plain text
360
+ with open(file_path, 'r', encoding='utf-8', errors='ignore') as f:
361
+ return f.read()
362
+ except Exception as e:
363
+ logger.error(f"Error reading uploaded file: {str(e)}")
364
+ return f"Error reading file: {str(e)}"
365
+
366
+ def transcribe_audio(audio_path):
367
+ """Transcribe audio file to CHAT format"""
368
+ if not audio_path:
369
+ return "Please upload an audio file first.", "❌ No audio file provided"
370
+
371
+ if SPEECH_RECOGNITION_AVAILABLE:
372
+ try:
373
+ r = sr.Recognizer()
374
+
375
+ # Convert to WAV if needed
376
+ wav_path = audio_path
377
+ if not audio_path.endswith('.wav'):
378
+ try:
379
+ audio = pydub.AudioSegment.from_file(audio_path)
380
+ wav_path = audio_path.rsplit('.', 1)[0] + '.wav'
381
+ audio.export(wav_path, format="wav")
382
+ except Exception as e:
383
+ logger.warning(f"Audio conversion failed: {e}")
384
+
385
+ # Transcribe
386
+ with sr.AudioFile(wav_path) as source:
387
+ audio_data = r.record(source)
388
+ text = r.recognize_google(audio_data)
389
+
390
+ # Format as CHAT
391
+ sentences = re.split(r'[.!?]+', text)
392
+ chat_lines = []
393
+ for sentence in sentences:
394
+ sentence = sentence.strip()
395
+ if sentence:
396
+ chat_lines.append(f"*PAR: {sentence}.")
397
+
398
+ result = '\n'.join(chat_lines)
399
+ return result, "βœ… Transcription completed successfully"
400
+
401
+ except sr.UnknownValueError:
402
+ return "Could not understand audio clearly", "❌ Speech not recognized"
403
+ except sr.RequestError as e:
404
+ return f"Error with speech recognition service: {e}", "❌ Service error"
405
+ except Exception as e:
406
+ logger.error(f"Transcription error: {e}")
407
+ return f"Error during transcription: {str(e)}", f"❌ Transcription failed"
408
+ else:
409
+ # Demo transcription
410
+ demo_text = """*PAR: this is a demonstration transcription.
411
+ *PAR: to enable real audio processing install speech_recognition and pydub.
412
+ *PAR: the demo shows how transcribed text would appear in CHAT format."""
413
+ return demo_text, "ℹ️ Demo mode - install speech_recognition for real audio processing"
414
+
415
+ def create_interface():
416
+ """Create the main Gradio interface"""
417
+
418
+ with gr.Blocks(title="CASL Analysis Tool", theme=gr.themes.Soft()) as app:
419
+
420
+ gr.Markdown("""
421
+ # πŸ—£οΈ CASL Analysis Tool
422
+ **Comprehensive Assessment of Spoken Language (CASL-2)**
423
+
424
+ Professional speech-language assessment tool for clinical practice and research.
425
+ Supports transcript analysis, audio transcription, and comprehensive reporting.
426
+ """)
427
+
428
+ with gr.Tabs():
429
+
430
+ # Main Analysis Tab
431
+ with gr.TabItem("πŸ“Š Analysis"):
432
+ with gr.Row():
433
+ with gr.Column():
434
+ gr.Markdown("### πŸ‘€ Patient Information")
435
+
436
+ patient_name = gr.Textbox(
437
+ label="Patient Name",
438
+ placeholder="Enter patient name"
439
+ )
440
+ record_id = gr.Textbox(
441
+ label="Medical Record ID",
442
+ placeholder="Enter medical record ID"
443
+ )
444
+
445
+ with gr.Row():
446
+ age = gr.Number(
447
+ label="Age (years)",
448
+ value=8,
449
+ minimum=1,
450
+ maximum=120
451
+ )
452
+ gender = gr.Radio(
453
+ ["male", "female", "other"],
454
+ label="Gender",
455
+ value="male"
456
+ )
457
+
458
+ assessment_date = gr.Textbox(
459
+ label="Assessment Date",
460
+ placeholder="MM/DD/YYYY",
461
+ value=datetime.now().strftime('%m/%d/%Y')
462
+ )
463
+ clinician_name = gr.Textbox(
464
+ label="Clinician Name",
465
+ placeholder="Enter clinician name"
466
+ )
467
+
468
+ gr.Markdown("### πŸ“ Speech Transcript")
469
+
470
+ sample_selector = gr.Dropdown(
471
+ choices=list(SAMPLE_TRANSCRIPTS.keys()),
472
+ label="Load Sample Transcript",
473
+ placeholder="Choose a sample to load"
474
+ )
475
+
476
+ file_upload = gr.File(
477
+ label="Upload Transcript File",
478
+ file_types=[".txt", ".cha"]
479
+ )
480
+
481
+ transcript = gr.Textbox(
482
+ label="Speech Transcript (CHAT format preferred)",
483
+ placeholder="Enter transcript text or load from samples/file...",
484
+ lines=12
485
+ )
486
+
487
+ analyze_btn = gr.Button(
488
+ "πŸ” Analyze Transcript",
489
+ variant="primary"
490
+ )
491
+
492
+ with gr.Column():
493
+ gr.Markdown("### πŸ“ˆ Analysis Results")
494
+
495
+ analysis_output = gr.Markdown(
496
+ label="Comprehensive CASL Analysis Report",
497
+ value="Analysis results will appear here after clicking 'Analyze Transcript'..."
498
+ )
499
+
500
+ gr.Markdown("### πŸ“€ Export Options")
501
+ if REPORTLAB_AVAILABLE:
502
+ export_btn = gr.Button("πŸ“„ Export as PDF", variant="secondary")
503
+ export_status = gr.Markdown("")
504
+ else:
505
+ gr.Markdown("⚠️ PDF export unavailable (ReportLab not installed)")
506
+
507
+ # Audio Transcription Tab
508
+ with gr.TabItem("🎀 Audio Transcription"):
509
+ with gr.Row():
510
+ with gr.Column():
511
+ gr.Markdown("### 🎡 Audio Processing")
512
+ gr.Markdown("""
513
+ Upload audio recordings for automatic transcription into CHAT format.
514
+ Supports common audio formats (.wav, .mp3, .m4a, .ogg, etc.)
515
+ """)
516
+
517
+ audio_input = gr.Audio(
518
+ type="filepath",
519
+ label="Audio Recording"
520
+ )
521
+
522
+ transcribe_btn = gr.Button(
523
+ "🎧 Transcribe Audio",
524
+ variant="primary"
525
+ )
526
+
527
+ with gr.Column():
528
+ transcription_output = gr.Textbox(
529
+ label="Transcription Result (CHAT Format)",
530
+ placeholder="Transcribed text will appear here...",
531
+ lines=15
532
+ )
533
+
534
+ transcription_status = gr.Markdown("")
535
+
536
+ copy_to_analysis_btn = gr.Button(
537
+ "πŸ“‹ Use for Analysis",
538
+ variant="secondary"
539
+ )
540
+
541
+ # Information Tab
542
+ with gr.TabItem("ℹ️ About"):
543
+ gr.Markdown("""
544
+ ## About the CASL Analysis Tool
545
+
546
+ This tool provides comprehensive speech-language assessment using the CASL-2 (Comprehensive Assessment of Spoken Language) framework.
547
+
548
+ ### Features:
549
+ - **Speech Factor Analysis**: Automated detection of disfluencies, word retrieval issues, grammatical errors, and repetitions
550
+ - **CASL-2 Domains**: Assessment of Lexical/Semantic, Syntactic, and Supralinguistic skills
551
+ - **Professional Scoring**: Standard scores, percentiles, and performance levels
552
+ - **Audio Transcription**: Convert speech recordings to CHAT format transcripts
553
+ - **Treatment Recommendations**: Evidence-based intervention suggestions
554
+
555
+ ### Supported Formats:
556
+ - **Text Files**: .txt format with manual transcript entry
557
+ - **CHAT Files**: .cha format following CHILDES conventions
558
+ - **Audio Files**: .wav, .mp3, .m4a, .ogg for automatic transcription
559
+
560
+ ### CHAT Format Guidelines:
561
+ - Use `*PAR:` for patient utterances
562
+ - Use `*INV:` for investigator/clinician utterances
563
+ - Mark filled pauses as `&-um`, `&-uh`
564
+ - Mark repetitions with `[/]`
565
+ - Mark revisions with `[//]`
566
+ - Mark errors with `[*]`
567
+
568
+ ### Usage Tips:
569
+ 1. Load a sample transcript to see the expected format
570
+ 2. Enter patient information for context-appropriate analysis
571
+ 3. Upload or type transcript in CHAT format for best results
572
+ 4. Review analysis results and treatment recommendations
573
+ 5. Export professional PDF reports for clinical documentation
574
+
575
+ ### Technical Notes:
576
+ - **Demo Mode**: Works without external dependencies using simulated analysis
577
+ - **Enhanced Mode**: Requires AWS Bedrock credentials for AI-powered analysis
578
+ - **Audio Processing**: Requires speech_recognition library for real transcription
579
+ - **PDF Export**: Requires ReportLab library for professional reports
580
+
581
+ For support or questions, please refer to the documentation.
582
+ """)
583
+
584
+ # Event Handlers
585
+ def load_sample_transcript(sample_name):
586
+ """Load selected sample transcript"""
587
+ if sample_name and sample_name in SAMPLE_TRANSCRIPTS:
588
+ return SAMPLE_TRANSCRIPTS[sample_name]
589
+ return ""
590
+
591
+ def perform_analysis(transcript_text, age_val, gender_val):
592
+ """Perform CASL analysis on transcript"""
593
+ if not transcript_text or len(transcript_text.strip()) < 20:
594
+ return "❌ **Error**: Please provide a longer transcript (minimum 20 characters) for meaningful analysis."
595
+
596
+ try:
597
+ # Perform analysis
598
+ results = analyze_transcript(transcript_text, age_val, gender_val)
599
+ return results['full_report']
600
+
601
+ except Exception as e:
602
+ logger.exception("Analysis error")
603
+ return f"❌ **Error during analysis**: {str(e)}\n\nPlease check your transcript format and try again."
604
+
605
+ def copy_transcription_to_analysis(transcription_text):
606
+ """Copy transcription result to analysis tab"""
607
+ return transcription_text
608
+
609
+ # Connect event handlers
610
+ sample_selector.change(
611
+ load_sample_transcript,
612
+ inputs=[sample_selector],
613
+ outputs=[transcript]
614
+ )
615
+
616
+ file_upload.upload(
617
+ process_upload,
618
+ inputs=[file_upload],
619
+ outputs=[transcript]
620
+ )
621
+
622
+ analyze_btn.click(
623
+ perform_analysis,
624
+ inputs=[transcript, age, gender],
625
+ outputs=[analysis_output]
626
+ )
627
+
628
+ transcribe_btn.click(
629
+ transcribe_audio,
630
+ inputs=[audio_input],
631
+ outputs=[transcription_output, transcription_status]
632
+ )
633
+
634
+ copy_to_analysis_btn.click(
635
+ copy_transcription_to_analysis,
636
+ inputs=[transcription_output],
637
+ outputs=[transcript]
638
+ )
639
+
640
+ return app
641
+
642
+ # Create and launch the application
643
+ if __name__ == "__main__":
644
+ # Check for optional dependencies
645
+ missing_deps = []
646
+ if not REPORTLAB_AVAILABLE:
647
+ missing_deps.append("reportlab (for PDF export)")
648
+ if not SPEECH_RECOGNITION_AVAILABLE:
649
+ missing_deps.append("speech_recognition & pydub (for audio transcription)")
650
+
651
+ if missing_deps:
652
+ print("πŸ“‹ Optional dependencies not found:")
653
+ for dep in missing_deps:
654
+ print(f" - {dep}")
655
+ print("The app will work with reduced functionality.")
656
+
657
+ if not bedrock_client:
658
+ print("ℹ️ AWS credentials not configured - using demo mode for analysis.")
659
+ print(" Configure AWS_ACCESS_KEY and AWS_SECRET_KEY for enhanced AI analysis.")
660
+
661
+ print("πŸš€ Starting CASL Analysis Tool...")
662
+
663
+ # Create and launch the app
664
+ app = create_interface()
665
+ app.launch(
666
+ show_api=False,
667
+ server_name="0.0.0.0",
668
+ server_port=7860
669
+ )
requirements.txt CHANGED
@@ -1,12 +1,9 @@
1
  gradio>=4.0.0
2
- pandas>=1.5.0
3
- numpy>=1.21.0
4
- matplotlib>=3.5.0
5
- seaborn>=0.11.0
6
- Pillow>=8.0.0
7
  reportlab>=3.6.0
8
- boto3>=1.28.0
9
- botocore>=1.31.0
10
- PyPDF2>=3.0.0
11
- speechrecognition>=3.8.1
12
  pydub>=0.25.0
 
1
  gradio>=4.0.0
2
+ pandas>=1.3.0
3
+ numpy>=1.20.0
4
+ matplotlib>=3.3.0
5
+ boto3>=1.20.0
 
6
  reportlab>=3.6.0
7
+ PyPDF2>=2.0.0
8
+ speech_recognition>=3.8.0
 
 
9
  pydub>=0.25.0