Spaces:
Sleeping
Sleeping
Upload app.py
Browse files
app.py
CHANGED
@@ -14,6 +14,7 @@ import torch.nn as nn
|
|
14 |
import torchvision.models as models
|
15 |
import torchvision.transforms as transforms
|
16 |
from sklearn.metrics.pairwise import cosine_similarity
|
|
|
17 |
import cv2
|
18 |
|
19 |
def square_padd(original_data, square_size=(120,152, 184), order = 1):
|
@@ -534,7 +535,7 @@ with gr.Blocks() as demo:
|
|
534 |
with gr.Column(scale=1):
|
535 |
gr.Markdown("### Step 4: Visualizing Allen Brain Cell Types Atlas")
|
536 |
gallery = gr.Gallery(label="ABC Atlas", value = gallery_images,columns = 5, height = 450)
|
537 |
-
gr.Markdown("### Step 5: Run cell type
|
538 |
with gr.Row():
|
539 |
run_button = gr.Button("Map My Sections")
|
540 |
reg_button = gr.Button("Run Registration (Optional)", visible=False)
|
|
|
14 |
import torchvision.models as models
|
15 |
import torchvision.transforms as transforms
|
16 |
from sklearn.metrics.pairwise import cosine_similarity
|
17 |
+
from skimage.transform import resize
|
18 |
import cv2
|
19 |
|
20 |
def square_padd(original_data, square_size=(120,152, 184), order = 1):
|
|
|
535 |
with gr.Column(scale=1):
|
536 |
gr.Markdown("### Step 4: Visualizing Allen Brain Cell Types Atlas")
|
537 |
gallery = gr.Gallery(label="ABC Atlas", value = gallery_images,columns = 5, height = 450)
|
538 |
+
gr.Markdown("### Step 5: Run cell type mapping and/or registeration. ")
|
539 |
with gr.Row():
|
540 |
run_button = gr.Button("Map My Sections")
|
541 |
reg_button = gr.Button("Run Registration (Optional)", visible=False)
|