COMET/augmentation_constants.py

import numpy as np

# Constants for augmentation layer
# .../T1/training/zoom_factors.csv contain the scale factors of all the training samples from isotropic to 128x128x128
#   The augmentation values will be scaled using the average+std
ZOOM_FACTORS = np.asarray([0.5032864535069749, 0.5363100665659675, 0.6292598243796296])
MAX_AUG_DISP_ISOT = 30
MAX_AUG_DEF_ISOT = 6
MAX_AUG_DISP = np.max(MAX_AUG_DISP_ISOT * ZOOM_FACTORS)  # Scaled displacements
MAX_AUG_DEF = np.max(MAX_AUG_DEF_ISOT * ZOOM_FACTORS)  # Scaled deformations
MAX_AUG_ANGLE = np.max([np.arctan(np.tan(10*np.pi/180) * ZOOM_FACTORS[1] / ZOOM_FACTORS[0]) * 180 / np.pi,
                        np.arctan(np.tan(10*np.pi/180) * ZOOM_FACTORS[2] / ZOOM_FACTORS[1]) * 180 / np.pi,
                        np.arctan(np.tan(10*np.pi/180) * ZOOM_FACTORS[2] / ZOOM_FACTORS[0]) * 180 / np.pi])  # Scaled angles
GAMMA_AUGMENTATION = False
BRIGHTNESS_AUGMENTATION = False
NUM_CONTROL_PTS_AUG = 10
NUM_AUGMENTATIONS = 5

IN_LAYERS = (0, 3)
OUT_LAYERS = (33, 39)

ENCONDER_LAYERS = (3, 17)
DECODER_LAYERS = (17, 33)

TOP_LAYERS_ENC = (3, 9)
TOP_LAYERS_DEC = (22, 29)
BOTTOM_LAYERS = (9, 22)

LAYER_RANGES = {'INPUT': (IN_LAYERS),
                'OUTPUT': (OUT_LAYERS),
                'ENCODER': (ENCONDER_LAYERS),
                'DECODER': (DECODER_LAYERS),
                'TOP': (TOP_LAYERS_ENC, TOP_LAYERS_DEC),
                'BOTTOM': (BOTTOM_LAYERS)}