andreped commited on
Commit
d3ff712
·
1 Parent(s): ccf7b17

Added demo section to README

Browse files
Files changed (2) hide show
  1. README.md +7 -0
  2. demo/src/utils.py +1 -0
README.md CHANGED
@@ -74,6 +74,13 @@ where:
74
 
75
  Use ```ddmr --help``` to see additional options like using precomputed segmentations to crop the images to the desired ROI, or debugging.
76
 
 
 
 
 
 
 
 
77
  ## 🏋️‍♂️ Training
78
 
79
  Use the "MultiTrain" scripts to launch the trainings, providing the neccesary parameters. Those in the COMET folder accepts a .ini configuration file (see COMET/train_config_files for example configurations).
 
74
 
75
  Use ```ddmr --help``` to see additional options like using precomputed segmentations to crop the images to the desired ROI, or debugging.
76
 
77
+ ## 🤗 Demo <a target="_blank" href="https://huggingface.co/spaces/andreped/DDMR"><img src="https://img.shields.io/badge/🤗%20Hugging%20Face-Spaces-yellow.svg"></a>
78
+
79
+ A live demo to easily test the best performing pretrained models was developed in Gradio and is deployed on `Hugging Face`.
80
+
81
+ To access the live demo, click on the `Hugging Face` badge above. Below is a snapshot of the current state of the demo app.
82
+
83
+
84
  ## 🏋️‍♂️ Training
85
 
86
  Use the "MultiTrain" scripts to launch the trainings, providing the neccesary parameters. Those in the COMET folder accepts a .ini configuration file (see COMET/train_config_files for example configurations).
demo/src/utils.py CHANGED
@@ -9,6 +9,7 @@ def load_ct_to_numpy(data_path):
9
  data_path = data_path.name
10
 
11
  image = nib.load(data_path)
 
12
  resampled = resample_to_output(image, None, order=0)
13
  data = resampled.get_fdata()
14
 
 
9
  data_path = data_path.name
10
 
11
  image = nib.load(data_path)
12
+ print("original nibabel image shape:", image.shape)
13
  resampled = resample_to_output(image, None, order=0)
14
  data = resampled.get_fdata()
15