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LungTumorMask

Commit History

Changed thresholding/resampling order step
fd5a329

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Ignore build-related stuff [no ci]
f1447b3

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Merge pull request #9 from andreped/threshold-fix
12a7dfe
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Fixed dtype to threshold arg
82a4988
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Support for setting threshold through argparse
9f284dc
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Improved section title style [no ci]
1155abd
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Updated stable release wheel URL [no ci]
cabb833
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Merge pull request #7 from VemundFredriksen/fix-unzip
ab9d510
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All software coauthors copyright
ee7dfbd
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Added info about Python 3.6-3.10 support [no ci]
7f5903f
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Remove Python 3.11
d2a32e6
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Remove lungmask postprocessing test task in CI
7b45a81
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numpy<=1.23.2 + Python 3.6-3.11
7cfe60d
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Deprecate Python 3.10
7ab87dc
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Support torch range to support Python 3.10
f8926b9
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Python 3.6-3.10 run CI
f0e4610
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Adding back Python 3.6 support
949adda
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monai<=0.8.1
3f6a5df
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Removed Python 3.6 from CI
428925d
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torch==1.11 + deprecated Python 3.6 support
beabbaa
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torch==1.10
2d9bee3
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torch==1.11 + monai<=0.3.0
896d7e2
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Fixed typo in argparse method
eebfaf9
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Fixed typo in lung-filter argparse
a0b45a1
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Added lungmask filtering CI job
0b3c96a
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Added support to state whether to filter lungs or not - default no
5c51ac6
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Refactored confidence map thresholding code [no ci]
2a35518
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Bump v1.1.1
e6420ff
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Removed 3.9 support in setup.py
5b4dcad
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Removed dependency installation step as part of setup.py [no ci]
24b0e0a
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Removed python 3.9 for now
5cac4be
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Fixed postprocessing typo in lungmask usage
1ddaffd
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Updated install instructions [no ci]
43308ac
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Remove redundant __init__.py
e1f8c7f
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Reduce numpy version
dba99d8
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Acknowledgements improvement [no ci]
7435771
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Fixed typo in deps
d99ac7a
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Use older version of MONAI
14be879
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use lungmask fork [no ci]
be27fc6
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Run CI on Ubuntu 20.04
ff83c49
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added DOI shield
c76f70e
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bump version
ac1ee60

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ignore .nii files
c1d6a45

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refactored
549cc37

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added lung mask postprocessing of tumor volume
ebb5411

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set correct version
84df7b7

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cast output to uint8, removed redundancy in .gitignore, refactored CI
a01eb63

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published in PLOS ONE
651f412
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try recent release of gdown
4b282a9

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changed to pre-release of gdown and disabled cookies
53a9f17

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