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Update app.py
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app.py
CHANGED
@@ -22,6 +22,7 @@ theme = gr.themes.Monochrome(
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## Function to get model from Hugging Face using token
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def get_model(model_name, token):
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login(token=token)
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@@ -78,7 +79,6 @@ def render_pdb(pdb_id, chain_id, res_start, res_end, pdb_string=None):
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return Molecule3D(tmp_pdb.name, reps=make_reps(res_start=res_start, res_end=res_end))
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## Function for Scaffolding
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@spaces.GPU()
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def scaffold(model_name, token, pdb_id, chain_id, motif_start, motif_end, prompt_length, insert_size):
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pdb = get_pdb(pdb_id, chain_id)
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@@ -139,7 +139,6 @@ def scaffold(model_name, token, pdb_id, chain_id, motif_start, motif_end, prompt
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## Function for Secondary Structure Editing
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@spaces.GPU()
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def ss_edit(model_name, token, pdb_id, chain_id, region_start, region_end, shortened_region_length, shortening_ss8):
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pdb = get_pdb(pdb_id, chain_id)
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edit_region = np.arange(region_start, region_end)
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@@ -186,7 +185,6 @@ def ss_edit(model_name, token, pdb_id, chain_id, region_start, region_end, short
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]
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## Function for SASA Editing
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@spaces.GPU()
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def sasa_edit(model_name, token, pdb_id, chain_id, span_start, span_end, n_samples):
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pdb = get_pdb(pdb_id, chain_id)
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)
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## Function to get model from Hugging Face using token
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@spaces.GPU()
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def get_model(model_name, token):
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login(token=token)
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return Molecule3D(tmp_pdb.name, reps=make_reps(res_start=res_start, res_end=res_end))
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## Function for Scaffolding
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def scaffold(model_name, token, pdb_id, chain_id, motif_start, motif_end, prompt_length, insert_size):
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pdb = get_pdb(pdb_id, chain_id)
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]
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## Function for Secondary Structure Editing
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def ss_edit(model_name, token, pdb_id, chain_id, region_start, region_end, shortened_region_length, shortening_ss8):
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pdb = get_pdb(pdb_id, chain_id)
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edit_region = np.arange(region_start, region_end)
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]
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## Function for SASA Editing
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def sasa_edit(model_name, token, pdb_id, chain_id, span_start, span_end, n_samples):
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pdb = get_pdb(pdb_id, chain_id)
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