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Suvadeep Das
commited on
Update app.py
Browse files
app.py
CHANGED
@@ -1,3 +1,4 @@
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import gradio as gr
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import torch
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from transformers import AutoModel, AutoTokenizer
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@@ -14,38 +15,46 @@ HF_TOKEN = os.getenv("HUGGING_FACE_HUB_TOKEN")
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if HF_TOKEN:
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login(token=HF_TOKEN)
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#
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def load_model():
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try:
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-
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"openbmb/MiniCPM-V-2_6",
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trust_remote_code=True,
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use_fast=True
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)
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-
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"openbmb/MiniCPM-V-2_6",
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trust_remote_code=True,
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torch_dtype=torch.float16,
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device_map="
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)
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return
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except Exception as e:
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# Fallback to non-gated version if access issues
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print(f"Error loading gated model: {e}")
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"openbmb/MiniCPM-V-2",
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trust_remote_code=True
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)
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"openbmb/MiniCPM-V-2",
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trust_remote_code=True,
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torch_dtype=torch.float16,
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device_map="cpu"
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)
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return
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# Initialize model
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model, tokenizer = load_model()
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def pdf_to_images(pdf_file):
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"""Convert PDF file to list of PIL images"""
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@@ -64,9 +73,13 @@ def pdf_to_images(pdf_file):
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print(f"Error converting PDF to images: {e}")
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return []
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def extract_data_from_image(image, extraction_prompt):
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"""Extract data from a single image using MiniCPM"""
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try:
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# Prepare messages for MiniCPM
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messages = [
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{
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@@ -78,7 +91,7 @@ def extract_data_from_image(image, extraction_prompt):
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}
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]
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# Generate response
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response = model.chat(
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image=image,
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msgs=messages,
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@@ -90,7 +103,7 @@ def extract_data_from_image(image, extraction_prompt):
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return {
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"status": "success",
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"extracted_data": response,
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"model_used": "MiniCPM-V-2_6"
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}
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except Exception as e:
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@@ -100,8 +113,9 @@ def extract_data_from_image(image, extraction_prompt):
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"extracted_data": None
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}
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"""
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try:
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if pdf_file is None:
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return {
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@@ -111,7 +125,7 @@ def extract_efax_from_pdf(pdf_file, extraction_prompt="You are a deterministic m
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"pages_data": []
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}
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# Convert PDF to images
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images = pdf_to_images(pdf_file)
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if not images:
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@@ -122,7 +136,7 @@ def extract_efax_from_pdf(pdf_file, extraction_prompt="You are a deterministic m
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"pages_data": []
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}
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# Process each page
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pages_data = []
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for i, image in enumerate(images):
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page_result = extract_data_from_image(image, extraction_prompt)
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@@ -136,8 +150,9 @@ def extract_efax_from_pdf(pdf_file, extraction_prompt="You are a deterministic m
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"status": "success",
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"total_pages": len(images),
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"pages_data": pages_data,
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"model_used": "MiniCPM-V-2_6",
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"
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}
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return aggregated_result
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@@ -152,9 +167,9 @@ def extract_efax_from_pdf(pdf_file, extraction_prompt="You are a deterministic m
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# Create Gradio Interface
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def create_gradio_interface():
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with gr.Blocks(title="eFax PDF Data Extractor") as demo:
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gr.Markdown("# eFax PDF Data Extraction API using MiniCPM")
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gr.Markdown("
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with gr.Tab("PDF Upload & Extraction"):
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with gr.Row():
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@@ -169,16 +184,16 @@ def create_gradio_interface():
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label="Extraction Prompt (applied to each page)",
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lines=3
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)
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extract_btn = gr.Button("Extract Data from PDF", variant="primary")
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with gr.Column():
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output = gr.JSON(label="Extracted Data (All Pages)")
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with gr.Tab("API Usage"):
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gr.Markdown("""
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## API Endpoints
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-
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### Python API Usage
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```
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@@ -201,62 +216,33 @@ def create_gradio_interface():
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result = response.json()
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print("Total pages:", result["data"]["total_pages"])
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print(f"Page {page['page_number']}:", page["page_data"]["extracted_data"])
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```
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### cURL Example
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```
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curl -X POST "https://your-username-extracting-efax.hf.space/api/predict" \\
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-H "Content-Type: application/json" \\
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-d '{
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"data": [
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{"name": "efax.pdf", "data": "application/pdf;base64,PDF_BASE64_HERE"},
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"Extract patient information"
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]
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}'
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```
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### Response Format
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```
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{
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"status": "success",
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"total_pages": 7,
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"pages_data": [
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{
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"page_number": 1,
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"page_data": {
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"status": "success",
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"extracted_data": "Patient: John Doe\\nEmail: [email protected]...",
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"model_used": "MiniCPM-V-2_6"
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}
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}
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]
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}
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```
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""")
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with gr.Tab("
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gr.Markdown("""
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##
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-
- **
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- **
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- **Processing**:
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- **Model**: MiniCPM-V-2_6 for
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- **
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##
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""")
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# Connect the interface
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extract_btn.click(
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fn=extract_efax_from_pdf,
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inputs=[pdf_input, prompt_input],
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outputs=output
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)
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return demo
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import spaces # ← Add this import for ZeroGPU
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import gradio as gr
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import torch
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from transformers import AutoModel, AutoTokenizer
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if HF_TOKEN:
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login(token=HF_TOKEN)
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# Global variables for model caching
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_model = None
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_tokenizer = None
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@spaces.GPU
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def load_model():
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"""Load MiniCPM model on GPU when needed"""
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global _model, _tokenizer
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if _model is not None and _tokenizer is not None:
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return _model, _tokenizer
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try:
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_tokenizer = AutoTokenizer.from_pretrained(
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"openbmb/MiniCPM-V-2_6",
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trust_remote_code=True,
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use_fast=True
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)
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_model = AutoModel.from_pretrained(
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"openbmb/MiniCPM-V-2_6",
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trust_remote_code=True,
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torch_dtype=torch.float16,
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device_map="auto" # ← Changed from "cpu" to "auto" for GPU
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)
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return _model, _tokenizer
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except Exception as e:
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# Fallback to non-gated version if access issues
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print(f"Error loading gated model: {e}")
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_tokenizer = AutoTokenizer.from_pretrained(
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"openbmb/MiniCPM-V-2",
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trust_remote_code=True,
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use_fast=True
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)
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_model = AutoModel.from_pretrained(
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"openbmb/MiniCPM-V-2",
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trust_remote_code=True,
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torch_dtype=torch.float16,
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device_map="auto" # ← Changed from "cpu" to "auto" for GPU
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)
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return _model, _tokenizer
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def pdf_to_images(pdf_file):
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"""Convert PDF file to list of PIL images"""
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print(f"Error converting PDF to images: {e}")
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return []
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@spaces.GPU
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def extract_data_from_image(image, extraction_prompt):
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"""Extract data from a single image using MiniCPM on GPU"""
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try:
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# Load model on GPU
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model, tokenizer = load_model()
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# Prepare messages for MiniCPM
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messages = [
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{
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}
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]
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# Generate response on GPU
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response = model.chat(
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image=image,
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msgs=messages,
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return {
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"status": "success",
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"extracted_data": response,
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"model_used": "MiniCPM-V-2_6-GPU"
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}
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except Exception as e:
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"extracted_data": None
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}
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@spaces.GPU(duration=120) # ← 120 seconds for multi-page processing
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def extract_efax_from_pdf(pdf_file, extraction_prompt="You are a deterministic medical data extraction engine. You will receive medical documents in various layouts. Your task is to extract specific fields into a strictly structured JSON format, including realistic confidence scores, with no assumptions or corrections.\n\nYour response MUST follow this exact JSON format:\n\n{\n \"data\": { ... },\n \"confidence_scores\": { ... },\n \"fields_needing_review\": [ ... ],\n \"metadata\": {\n \"extraction_timestamp\": \"<ISO 8601 or UUID>\",\n \"model_used\": \"gpt-4o\",\n \"confidence_threshold\": 0.9,\n \"requires_human_review\": <true|false>\n }\n}\n\n— All extracted fields must appear exactly as found in the document.\n— Confidence scores MUST be realistic floats between 0.0 and 1.0.\n— NEVER default to 0.0 unless data is missing or unreadable.\n— Include all mandatory fields below, even if empty.\n— If any field has confidence < 0.9, add it to `fields_needing_review` and set `requires_human_review` to true.\n\n--------------------------------\nSTRICT FIELD FORMATTING RULES:\n--------------------------------\n\n• Dates: Format as MM/DD/YYYY only\n• Phone numbers: Use digits and hyphens only (e.g., 406-596-1901), no extensions or parentheses\n• Gender: \"Male\", \"Female\", or \"Other\" only\n• Email: Must contain @ and valid domain, otherwise leave empty\n• Zip code: Only extract as last 5 digits of address\n\n--------------------------------\nREFERRAL SOURCE RULES:\n--------------------------------\n\n• Extract clinic/hospital/facility name ONLY – never the provider's name\n• Use facility's phone/fax/email, not individual provider's contact\n• Prefer header/fax banner for referral source over body text\n• Do not extract receiver clinic names (e.g., Frontier Psychiatry) as referral source\n\n--------------------------------\nINSURANCE EXTRACTION FORMAT:\n--------------------------------\n\nEach tier must follow this structure:\n\"primary_insurance\": {\n \"payer_name\": \"string\",\n \"member_id\": \"string\",\n \"group_id\": \"string\"\n},\n\"secondary_insurance\": { ... },\n\"tertiary_insurance\": { ... }\n\n• Use \"member_id\" for any ID (Policy, Insurance ID, Subscriber ID, etc.)\n• Use \"group_id\" ONLY if explicitly labeled as \"Group ID\", \"Group Number\", etc.\n• Leave all fields empty if \"Self Pay\" is indicated\n\n--------------------------------\nDIAGNOSIS EXTRACTION RULES:\n--------------------------------\n\n• Extract diagnosis codes AND their descriptions\n• If only code is present, set description to \"\" and confidence ≤ 0.6\n• DO NOT infer description from ICD code\n\n--------------------------------\nMANDATORY FIELDS TO EXTRACT:\n--------------------------------\n\n• date_of_receipt\n• patient_first_name\n• patient_last_name\n• patient_dob\n• patient_gender\n• patient_primary_phone_number\n• patient_secondary_phone_number\n• patient_email\n• patient_address\n• patient_zip_code\n• referral_source\n• referral_source_phone_no\n• referral_source_fax_no\n• referral_source_email\n• primary_insurance\n• secondary_insurance\n• tertiary_insurance\n• priority (\"Routine\" or \"Urgent\" ONLY)\n• reason_for_referral\n• diagnosis_informations (list of { code, description })\n• refine_reason\n• extracted_page_numbers (list of page numbers where data was found)\n\n--------------------------------\nCONFIDENCE SCORING:\n--------------------------------\n\nAssign realistic confidence (0.0–1.0) per field, e.g.:\n\n• 0.95–1.0 → Clearly labeled, unambiguous data\n• 0.7–0.94 → Some uncertainty (low quality, odd format)\n• 0.0–0.6 → Missing, ambiguous, or noisy data\n• Use float precision (e.g., 0.87, not just 1.0)\n\nAlways populate the `confidence_scores` dictionary with the same structure as `data`.\n\nIf any score < 0.9, populate `fields_needing_review` and set `requires_human_review = true`.\n\n--------------------------------\nFINAL REMINDERS:\n--------------------------------\n\n• No assumptions or corrections – only extract what's visible\n• Follow exact field formatting and nesting\n• Maintain reproducibility and determinism\n• Return full structure even if some fields are empty\n• NEVER skip the confidence_scores section\n\nRespond only with the valid JSON."):
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"""Main function to process multi-page PDF eFax on GPU"""
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try:
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if pdf_file is None:
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return {
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"pages_data": []
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}
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# Convert PDF to images (CPU operation)
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images = pdf_to_images(pdf_file)
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if not images:
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"pages_data": []
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}
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# Process each page on GPU
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pages_data = []
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for i, image in enumerate(images):
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page_result = extract_data_from_image(image, extraction_prompt)
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"status": "success",
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"total_pages": len(images),
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"pages_data": pages_data,
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"model_used": "MiniCPM-V-2_6-ZeroGPU",
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"hardware": "ZeroGPU",
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"extraction_prompt": extraction_prompt[:100] + "..." if len(extraction_prompt) > 100 else extraction_prompt
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}
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return aggregated_result
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# Create Gradio Interface
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def create_gradio_interface():
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with gr.Blocks(title="eFax PDF Data Extractor - ZeroGPU") as demo:
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gr.Markdown("# eFax PDF Data Extraction API using MiniCPM on ZeroGPU")
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gr.Markdown("🚀 **GPU-Accelerated** processing for faster multi-page eFax extraction")
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with gr.Tab("PDF Upload & Extraction"):
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with gr.Row():
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label="Extraction Prompt (applied to each page)",
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lines=3
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)
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extract_btn = gr.Button("🚀 Extract Data from PDF (GPU)", variant="primary")
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with gr.Column():
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output = gr.JSON(label="Extracted Data (All Pages)")
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with gr.Tab("API Usage"):
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gr.Markdown("""
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## API Endpoints (ZeroGPU Powered)
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Your Space now runs on **ZeroGPU** for 10-50x faster processing!
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### Python API Usage
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```
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result = response.json()
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print("Total pages:", result["data"]["total_pages"])
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print("Hardware:", result["data"]["hardware"]) # Should show "ZeroGPU"
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```
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""")
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with gr.Tab("Performance Info"):
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gr.Markdown("""
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## ZeroGPU Performance
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- **Hardware**: ZeroGPU (70GB VRAM)
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- **Speed**: 10-50x faster than CPU processing
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- **Typical Processing Time**: 2-5 minutes for 6-7 page eFax
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- **Model**: MiniCPM-V-2_6 optimized for GPU
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- **Dynamic Allocation**: GPU activates only during processing
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## Processing Pipeline
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1. **PDF → Images**: Converted at 300 DPI (CPU)
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2. **Model Loading**: Cached on first use (GPU)
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3. **Text Extraction**: Each page processed individually (GPU)
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4. **JSON Output**: Structured medical data with confidence scores
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""")
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# Connect the interface
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extract_btn.click(
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fn=extract_efax_from_pdf,
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inputs=[pdf_input, prompt_input],
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outputs=output,
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queue=True
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)
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return demo
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