Spaces:
Running
Running
Add assets dir to config
Browse files- app/main.py +2 -0
app/main.py
CHANGED
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@@ -51,6 +51,7 @@ if args.s3_uri: # Use S3 path if exists
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f"{args.s3_uri}/Interpretation_all_hg38_allembed_v4_natac/"
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)
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GET_CONFIG.motif_dir = f"{args.s3_uri}/interpret_natac/motif-clustering/"
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cell_type_annot = pd.read_csv(
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GET_CONFIG.celltype.data_dir.split("fetal_adult")[0]
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+ "data/cell_type_pretrain_human_bingren_shendure_apr2023.txt"
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@@ -78,6 +79,7 @@ else: # Run with local data
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f"{args.data}/Interpretation_all_hg38_allembed_v4_natac/"
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)
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GET_CONFIG.motif_dir = f"{args.data}/interpret_natac/motif-clustering/"
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cell_type_annot = pd.read_csv(
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GET_CONFIG.celltype.data_dir.split("fetal_adult")[0]
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+ "data/cell_type_pretrain_human_bingren_shendure_apr2023.txt"
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f"{args.s3_uri}/Interpretation_all_hg38_allembed_v4_natac/"
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)
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GET_CONFIG.motif_dir = f"{args.s3_uri}/interpret_natac/motif-clustering/"
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+
GET_CONFIG.assets_dir = f"{args.s3_uri}/assets/"
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cell_type_annot = pd.read_csv(
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GET_CONFIG.celltype.data_dir.split("fetal_adult")[0]
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+ "data/cell_type_pretrain_human_bingren_shendure_apr2023.txt"
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f"{args.data}/Interpretation_all_hg38_allembed_v4_natac/"
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)
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GET_CONFIG.motif_dir = f"{args.data}/interpret_natac/motif-clustering/"
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+
GET_CONFIG.assets_dir = f"{args.data}/assets/"
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cell_type_annot = pd.read_csv(
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GET_CONFIG.celltype.data_dir.split("fetal_adult")[0]
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+ "data/cell_type_pretrain_human_bingren_shendure_apr2023.txt"
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