app.py

import pandas as pd

import gradio as gr
from gradio_leaderboard import Leaderboard

from utils import fetch_hf_results, show_output_box
from about import ASSAY_LIST, ASSAY_RENAME, ASSAY_EMOJIS, ASSAY_DESCRIPTION, ABOUT_TEXT, FAQS
from submit import make_submission
    
def format_leaderboard_table(df_results: pd.DataFrame, assay: str | None = None):
    # Previous things that were nice in the constellaration leaderboard:
    # Having a submission time column, and a user column where the username is clickable (this is a pro for usability but con for anonymity)
    # full_df.rename(columns={'submission_time': 'submission time', 'problem_type': 'problem type'}, inplace=True)
    # to_show['user'] = to_show['user'].apply(lambda x: make_user_clickable(x)).astype(str)
    column_order = ["model", "property", "spearman", "spearman_cross_val"]
    df = df_results.query("assay.isin(@ASSAY_RENAME.keys())").copy()
    if assay is not None:
        df = df[df['assay'] == assay]
    df = df[column_order]
    return df.sort_values(by="spearman", ascending=False)

def get_leaderboard_object(df_results: pd.DataFrame, assay: str | None = None):
    df = format_leaderboard_table(df_results=df_results, assay=assay)
    filter_columns = ["model"]
    if assay is None:
        filter_columns.append("property")
    # TODO how to sort filter columns alphabetically?
    Leaderboard(
        value=df,
        datatype=["str", "str", "str", "number"],
        select_columns=["model", "property", "spearman", "spearman_cross_val"],
        search_columns=["model"],
        filter_columns=filter_columns,
        every=60,
        render=True
    )

with gr.Blocks() as demo:
    gr.Markdown("""
        ## Welcome to the Ginkgo Antibody Developability Benchmark!
        
        Participants can submit their model to the leaderboard by uploading a CSV file (see the "✉️ Submit" tab).
        See more details in the "❔About" tab.
        """)
    df = fetch_hf_results()
    with gr.Tabs(elem_classes="tab-buttons"):
        # Procedurally make these 5 tabs
        for assay in ASSAY_LIST:
            with gr.TabItem(f"{ASSAY_EMOJIS[assay]} {ASSAY_RENAME[assay]}", elem_id=f"abdev-benchmark-tab-table"):
                gr.Markdown(f"# {ASSAY_DESCRIPTION[assay]}")
                get_leaderboard_object(df_results=df, assay=assay)
        
        with gr.TabItem("🚀 Overall", elem_id="abdev-benchmark-tab-table"):                
            gr.Markdown("# Antibody Developability Benchmark Leaderboard over all properties")
            get_leaderboard_object(df_results=df)
            # TODO: this is not going to update well, need to fix
        
        with gr.TabItem("❔About", elem_id="abdev-benchmark-tab-table"):
            gr.Markdown(
            """
            <style>
            .resized-image img {
                width: 80%;
                height: auto;
                display: block;
                margin-left: auto;
                margin-right: auto;
            }

            @media (max-width: 768px) {
                .resized-image img {
                    width: 100%;
                }
            }
            </style>
            """,
            elem_id="style-inject"
        )
            gr.Image(
                value="./assets/competition_logo.jpg",
                show_label=False,
                elem_classes=["resized-image"],
                show_download_button=False,
            )
            gr.Markdown(ABOUT_TEXT)
            for question, answer in FAQS.items():
                with gr.Accordion(question):
                    gr.Markdown(answer)

        with gr.TabItem("✉️ Submit", elem_id="boundary-benchmark-tab-table"):
            gr.Markdown(
                """
            # Antibody Developability Submission
            Upload a CSV to get a score!
            """
            )
            filename = gr.State(value=None) 
            eval_state = gr.State(value=None) 
            user_state = gr.State(value=None)
            anonymous_state = gr.State(value=False)

            gr.LoginButton()

            with gr.Row():
                with gr.Column():
                    username_input = gr.Textbox(
                        label="Username", 
                        placeholder="Enter your Hugging Face username",
                        info="This will be displayed on the leaderboard."
                    )

                    anonymous_checkbox = gr.Checkbox(label="Would you like to keep your submission anonymous?")
                with gr.Column():
                    boundary_file = gr.File(label="Submission CSV")

            username_input.change(
                fn=lambda x: x if x.strip() else None,
                inputs=username_input,
                outputs=user_state
            )                       

            submit_btn = gr.Button("Evaluate")
            message = gr.Textbox(label="Status", lines=1, visible=False)
            # help message
            gr.Markdown("If you have issues with submission or using the leaderboard, please start a discussion in the Community tab of this Space.")
            
            submit_btn.click(
                make_submission,
                inputs=[boundary_file, user_state, anonymous_state],
                outputs=[message],
            ).then(
                fn=show_output_box,
                inputs=[message],
                outputs=[message],
            )
    # Footnote
    gr.Markdown(
        """
        <div style="text-align: center; font-size: 14px; color: gray; margin-top: 2em;">
        📬 For questions or feedback, contact <a href="mailto:[email protected]">[email protected]</a> or visit the Community tab at the top of this page.
        </div>
        """,
        elem_id="contact-footer"
    )

if __name__ == "__main__":
    demo.launch()