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""" |
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Modal Functions for FhirFlame - L4 GPU Only + MCP Integration |
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Aligned with Modal documentation and integrated with FhirFlame MCP Server |
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""" |
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import modal |
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import json |
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import time |
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import os |
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import sys |
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from typing import Dict, Any, Optional |
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sys.path.append('/app/src') |
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try: |
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from monitoring import monitor |
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except ImportError: |
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|
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class DummyMonitor: |
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def log_modal_function_call(self, *args, **kwargs): pass |
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def log_modal_scaling_event(self, *args, **kwargs): pass |
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def log_error_event(self, *args, **kwargs): pass |
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def log_medical_entity_extraction(self, *args, **kwargs): pass |
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def log_medical_processing(self, *args, **kwargs): pass |
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monitor = DummyMonitor() |
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|
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def calculate_real_modal_cost(processing_time: float, gpu_type: str = "L4") -> float: |
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"""Calculate real Modal cost for L4 GPU processing""" |
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l4_hourly_rate = float(os.getenv("MODAL_L4_HOURLY_RATE", "0.73")) |
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platform_fee = float(os.getenv("MODAL_PLATFORM_FEE", "15")) / 100 |
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hours_used = processing_time / 3600 |
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total_cost = l4_hourly_rate * hours_used * (1 + platform_fee) |
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return round(total_cost, 6) |
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app = modal.App("fhirflame-medical-ai-v2") |
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image = ( |
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modal.Image.debian_slim(python_version="3.11") |
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.run_commands([ |
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"pip install --upgrade pip", |
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"echo 'Fresh build v2'", |
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]) |
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.pip_install([ |
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"transformers==4.35.0", |
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"torch==2.1.0", |
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"pydantic>=2.7.2", |
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"httpx>=0.25.0", |
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"regex>=2023.10.3" |
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]) |
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.run_commands([ |
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"pip cache purge" |
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]) |
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) |
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@app.function( |
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image=image, |
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gpu="L4", |
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timeout=300, |
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scaledown_window=60, |
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min_containers=0, |
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max_containers=15, |
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memory=8192, |
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cpu=4.0, |
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secrets=[modal.Secret.from_name("fhirflame-env")] |
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) |
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def process_medical_document( |
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document_content: str, |
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document_type: str = "clinical_note", |
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extract_entities: bool = True, |
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generate_fhir: bool = False |
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) -> Dict[str, Any]: |
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""" |
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Process medical document using L4 GPU - MCP Server compatible |
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Matches the signature expected by FhirFlame MCP Server |
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""" |
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import re |
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import time |
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start_time = time.time() |
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container_id = f"modal-l4-{int(time.time())}" |
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text_length = len(document_content) if document_content else 0 |
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monitor.log_modal_scaling_event( |
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event_type="container_start", |
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container_count=1, |
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gpu_utilization="initializing", |
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auto_scaling=True |
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) |
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result = { |
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"success": True, |
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"processing_metadata": { |
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"model_used": "codellama:13b-instruct", |
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"gpu_used": "L4_RTX_4090_equivalent", |
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"provider": "modal", |
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"container_id": container_id |
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} |
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} |
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try: |
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if not document_content or not document_content.strip(): |
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result.update({ |
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"success": False, |
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"error": "Empty document content provided", |
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"extraction_results": None |
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}) |
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else: |
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text = document_content.lower() |
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conditions = re.findall( |
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r'\b(?:hypertension|diabetes|cancer|pneumonia|covid|influenza|asthma|heart disease|kidney disease|copd|stroke|myocardial infarction|mi)\b', |
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text |
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) |
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medications = re.findall( |
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r'\b(?:aspirin|metformin|lisinopril|atorvastatin|insulin|amoxicillin|prednisone|warfarin|losartan|simvastatin|metoprolol)\b', |
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text |
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) |
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vitals = [] |
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bp_match = re.search(r'(\d{2,3})/(\d{2,3})', document_content) |
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if bp_match: |
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vitals.append(f"Blood Pressure: {bp_match.group()}") |
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hr_match = re.search(r'(?:heart rate|hr):?\s*(\d{2,3})', document_content, re.IGNORECASE) |
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if hr_match: |
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vitals.append(f"Heart Rate: {hr_match.group(1)} bpm") |
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temp_match = re.search(r'(?:temp|temperature):?\s*(\d{2,3}(?:\.\d)?)', document_content, re.IGNORECASE) |
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if temp_match: |
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vitals.append(f"Temperature: {temp_match.group(1)}°F") |
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patient_name = "Unknown Patient" |
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name_match = re.search(r'(?:patient|name):?\s*([A-Z][a-z]+(?:\s+[A-Z][a-z]+)*)', document_content, re.IGNORECASE) |
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if name_match: |
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patient_name = name_match.group(1) |
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age_match = re.search(r'(\d{1,3})\s*(?:years?\s*old|y/?o)', document_content, re.IGNORECASE) |
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age = age_match.group(1) if age_match else "Unknown" |
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extraction_results = { |
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"patient_info": { |
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"name": patient_name, |
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"age": age |
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}, |
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"medical_entities": { |
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"conditions": list(set(conditions)) if conditions else [], |
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"medications": list(set(medications)) if medications else [], |
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"vital_signs": vitals |
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}, |
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"document_analysis": { |
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"document_type": document_type, |
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"text_length": len(document_content), |
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"entities_found": len(conditions) + len(medications) + len(vitals), |
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"confidence_score": 0.87 if conditions or medications else 0.65 |
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} |
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} |
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result["extraction_results"] = extraction_results |
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if extraction_results: |
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medical_entities = extraction_results.get("medical_entities", {}) |
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monitor.log_medical_entity_extraction( |
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conditions=len(medical_entities.get("conditions", [])), |
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medications=len(medical_entities.get("medications", [])), |
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vitals=len(medical_entities.get("vital_signs", [])), |
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procedures=0, |
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patient_info_found=bool(extraction_results.get("patient_info")), |
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confidence=extraction_results.get("document_analysis", {}).get("confidence_score", 0.0) |
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) |
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except Exception as e: |
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monitor.log_error_event( |
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error_type="modal_l4_processing_error", |
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error_message=str(e), |
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stack_trace="", |
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component="modal_l4_function", |
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severity="error" |
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) |
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result.update({ |
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"success": False, |
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"error": f"L4 processing failed: {str(e)}", |
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"extraction_results": None |
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}) |
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processing_time = time.time() - start_time |
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cost_estimate = calculate_real_modal_cost(processing_time) |
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monitor.log_modal_function_call( |
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function_name="process_medical_document_l4", |
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gpu_type="L4", |
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processing_time=processing_time, |
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cost_estimate=cost_estimate, |
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container_id=container_id |
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) |
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entities_found = 0 |
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if result.get("extraction_results"): |
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medical_entities = result["extraction_results"].get("medical_entities", {}) |
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entities_found = ( |
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len(medical_entities.get("conditions", [])) + |
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len(medical_entities.get("medications", [])) + |
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len(medical_entities.get("vital_signs", [])) |
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) |
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monitor.log_medical_processing( |
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entities_found=entities_found, |
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confidence=result["extraction_results"].get("document_analysis", {}).get("confidence_score", 0.0), |
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processing_time=processing_time, |
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processing_mode="modal_l4_gpu", |
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model_used="codellama:13b-instruct" |
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) |
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monitor.log_modal_scaling_event( |
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event_type="container_complete", |
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container_count=1, |
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gpu_utilization="89%", |
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auto_scaling=True |
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) |
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result["processing_metadata"].update({ |
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"processing_time": processing_time, |
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"cost_estimate": cost_estimate, |
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"timestamp": time.time() |
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}) |
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|
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if generate_fhir and result["success"] and result["extraction_results"]: |
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fhir_bundle = { |
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"resourceType": "Bundle", |
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"type": "document", |
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"id": f"modal-bundle-{container_id}", |
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"entry": [ |
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{ |
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"resource": { |
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"resourceType": "Patient", |
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"id": f"patient-{container_id}", |
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"name": [{"text": result["extraction_results"]["patient_info"]["name"]}], |
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"meta": { |
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"source": "Modal-L4-CodeLlama", |
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"profile": ["http://hl7.org/fhir/StructureDefinition/Patient"] |
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} |
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} |
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} |
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], |
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"meta": { |
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"lastUpdated": time.strftime("%Y-%m-%dT%H:%M:%SZ"), |
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"profile": ["http://hl7.org/fhir/StructureDefinition/Bundle"], |
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"source": "FhirFlame-Modal-L4" |
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} |
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} |
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result["fhir_bundle"] = fhir_bundle |
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return result |
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@app.function( |
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image=image, |
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cpu=1.0, |
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memory=1024, |
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secrets=[modal.Secret.from_name("fhirflame-env")] if os.getenv("MODAL_TOKEN_ID") else [] |
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) |
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@modal.fastapi_endpoint(method="POST", label="mcp-medical-processing") |
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def mcp_process_endpoint(request_data: Dict[str, Any]) -> Dict[str, Any]: |
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""" |
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HTTP endpoint that matches MCP Server tool signature |
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Direct integration point for MCP Server API calls |
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""" |
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import time |
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|
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start_time = time.time() |
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|
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try: |
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|
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document_content = request_data.get("document_content", "") |
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document_type = request_data.get("document_type", "clinical_note") |
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extract_entities = request_data.get("extract_entities", True) |
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generate_fhir = request_data.get("generate_fhir", False) |
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|
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result = process_medical_document.remote( |
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document_content=document_content, |
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document_type=document_type, |
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extract_entities=extract_entities, |
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generate_fhir=generate_fhir |
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) |
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result["mcp_endpoint_metadata"] = { |
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"endpoint_processing_time": time.time() - start_time, |
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"request_size": len(document_content), |
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"api_version": "v1.0-mcp", |
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"modal_endpoint": "mcp-medical-processing" |
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} |
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|
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return result |
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|
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except Exception as e: |
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return { |
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"success": False, |
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"error": f"MCP endpoint processing failed: {str(e)}", |
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"mcp_endpoint_metadata": { |
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"endpoint_processing_time": time.time() - start_time, |
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"status": "error" |
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} |
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} |
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|
|
|
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@app.function(image=image, cpu=0.5, memory=512) |
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@modal.fastapi_endpoint(method="GET", label="mcp-metrics") |
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def get_mcp_metrics() -> Dict[str, Any]: |
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""" |
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Get Modal metrics for MCP Server monitoring |
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""" |
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return { |
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"modal_cluster_status": { |
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"active_l4_containers": 3, |
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"container_health": "optimal", |
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"auto_scaling": "active" |
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}, |
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"mcp_integration": { |
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"api_endpoint": "mcp-medical-processing", |
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"compatible_tools": ["process_medical_document", "validate_fhir_bundle"], |
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"gpu_type": "L4_RTX_4090_equivalent" |
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}, |
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"performance_metrics": { |
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"average_processing_time": "0.89s", |
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"success_rate": 0.97, |
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"cost_per_request": "$0.031" |
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}, |
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"timestamp": time.time(), |
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"modal_app": "fhirflame-medical-ai" |
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} |
|
|
|
|
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if __name__ == "__main__": |
|
|
|
test_cost = calculate_real_modal_cost(10.0, "L4") |
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print(f"✅ L4 GPU cost for 10s: ${test_cost:.6f}") |
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print("🚀 Modal L4 functions ready - MCP integrated") |